XVector
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see XVector.
Representation and manipulation of external sequences
Bioconductor version: 3.7
Memory efficient S4 classes for storing sequences "externally" (behind an R external pointer, or on disk).
Author: Hervé Pagès and Patrick Aboyoun
Maintainer: Hervé Pagès <hpages at fredhutch.org>
Citation (from within R, enter
citation("XVector")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("XVector")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | DataRepresentation, Infrastructure, Software |
| Version | 0.20.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (10.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.8.0), methods, BiocGenerics(>= 0.19.2), S4Vectors(>= 0.17.24), IRanges(>= 2.13.16) |
| Imports | methods, utils, zlibbioc, BiocGenerics, S4Vectors, IRanges |
| System Requirements | |
| URL |
See More
| Suggests | Biostrings, drosophila2probe, RUnit |
| Linking To | S4Vectors, IRanges |
| Enhances | |
| Depends On Me | Biostrings, motifRG, triplex |
| Imports Me | BSgenome, ChIPsim, CNEr, compEpiTools, dada2, DECIPHER, gcrma, GenomicFeatures, GenomicRanges, Gviz, IONiseR, kebabs, MatrixRider, motifRG, R453Plus1Toolbox, Rsamtools, rtracklayer, TFBSTools, tracktables, VariantAnnotation |
| Suggests Me | IRanges |
| Links To Me | Biostrings, CNEr, DECIPHER, kebabs, MatrixRider, Rsamtools, rSFFreader, rtracklayer, ShortRead, triplex, VariantAnnotation, VariantFiltering |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | XVector_0.20.0.tar.gz |
| Windows Binary | XVector_0.20.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | XVector_0.20.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/XVector |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/XVector |
| Package Short Url | https://bioconductor.org/packages/XVector/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.7 | Source Archive |