STRINGdb
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see STRINGdb.
STRINGdb (Search Tool for the Retrieval of Interacting proteins database)
Bioconductor version: 3.7
The STRINGdb package provides a R interface to the STRING protein-protein interactions database (http://www.string-db.org).
Author: Andrea Franceschini <andrea.franceschini at isb-sib.ch>
Maintainer: Damian Szklarczyk <damian.szklarczyk at imls.uzh.ch>
Citation (from within R, enter
citation("STRINGdb")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("STRINGdb")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("STRINGdb")
STRINGdb Vignette | R Script | |
Reference Manual |
Details
biocViews | Network, Software |
Version | 1.20.0 |
In Bioconductor since | BioC 2.13 (R-3.0) (10.5 years) |
License | GPL-2 |
Depends | R (>= 2.14.0) |
Imports | png, sqldf, plyr, igraph, RCurl, methods, RColorBrewer, gplots, hash, plotrix |
System Requirements | |
URL |
See More
Suggests | RUnit, BiocGenerics |
Linking To | |
Enhances | |
Depends On Me | PPInfer, scsR |
Imports Me | coexnet, IMMAN, pwOmics, RITAN |
Suggests Me | epiNEM, GeneNetworkBuilder, netSmooth, PCAN |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | STRINGdb_1.20.0.tar.gz |
Windows Binary | STRINGdb_1.20.0.zip |
Mac OS X 10.11 (El Capitan) | STRINGdb_1.20.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/STRINGdb |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/STRINGdb |
Package Short Url | https://bioconductor.org/packages/STRINGdb/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.7 | Source Archive |