PCAN
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see PCAN.
Phenotype Consensus ANalysis (PCAN)
Bioconductor version: 3.7
Phenotypes comparison based on a pathway consensus approach. Assess the relationship between candidate genes and a set of phenotypes based on additional genes related to the candidate (e.g. Pathways or network neighbors).
Author: Matthew Page and Patrice Godard
Maintainer: Matthew Page <matthew.page at ucb.com> and Patrice Godard <patrice.godard at gmail.com>
citation("PCAN")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PCAN")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("PCAN")
Assessing gene relevance for a set of phenotypes | HTML | R Script |
Reference Manual |
Details
biocViews | Annotation, FunctionalPrediction, Genetics, Network, Pathways, Sequencing, Software, VariantAnnotation |
Version | 1.8.0 |
In Bioconductor since | BioC 3.3 (R-3.3) (8 years) |
License | CC BY-NC-ND 4.0 |
Depends | R (>= 3.3), BiocParallel |
Imports | grDevices, stats |
System Requirements | |
URL |
See More
Suggests | BiocStyle, knitr, rmarkdown, reactome.db, STRINGdb |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | PCAN_1.8.0.tar.gz |
Windows Binary | PCAN_1.8.0.zip |
Mac OS X 10.11 (El Capitan) | PCAN_1.8.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/PCAN |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/PCAN |
Package Short Url | https://bioconductor.org/packages/PCAN/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.7 | Source Archive |