ExiMiR
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see ExiMiR.
R functions for the normalization of Exiqon miRNA array data
Bioconductor version: 3.7
This package contains functions for reading raw data in ImaGene TXT format obtained from Exiqon miRCURY LNA arrays, annotating them with appropriate GAL files, and normalizing them using a spike-in probe-based method. Other platforms and data formats are also supported.
Author: Sylvain Gubian <DL.RSupport at pmi.com>, Alain Sewer <DL.RSupport at pmi.com>, PMP SA
Maintainer: Sylvain Gubian <DL.RSupport at pmi.com>
citation("ExiMiR")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ExiMiR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ExiMiR")
Description of ExiMiR | R Script | |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | GeneExpression, Microarray, OneChannel, Preprocessing, Software, Transcription, TwoChannel |
Version | 2.22.0 |
In Bioconductor since | BioC 2.8 (R-2.13) (13 years) |
License | GPL-2 |
Depends | R (>= 2.10), Biobase(>= 2.5.5), affy(>= 1.26.1), limma |
Imports | affyio(>= 1.13.3), Biobase(>= 2.5.5), preprocessCore(>= 1.10.0) |
System Requirements | |
URL |
See More
Suggests | mirna10cdf |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | ExiMiR_2.22.0.tar.gz |
Windows Binary | ExiMiR_2.22.0.zip |
Mac OS X 10.11 (El Capitan) | ExiMiR_2.22.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/ExiMiR |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ExiMiR |
Package Short Url | https://bioconductor.org/packages/ExiMiR/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.7 | Source Archive |