CONFESS
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see CONFESS.
Cell OrderiNg by FluorEScence Signal
Bioconductor version: 3.7
Single Cell Fluidigm Spot Detector.
Author: Diana LOW and Efthimios MOTAKIS
Maintainer: Diana LOW <dlow at imcb.a-star.edu.sg>
Citation (from within R, enter
citation("CONFESS")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CONFESS")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CONFESS")| CONFESS | R Script | |
| CONFESS | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CellBiology, Classification, Clustering, DataImport, GeneExpression, QualityControl, RNASeq, Regression, Software, TimeCourse, Visualization |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (8 years) |
| License | GPL-2 |
| Depends | R (>= 3.3), grDevices, utils, stats, graphics |
| Imports | methods, changepoint, cluster, contrast, data.table (>= 1.9.7), ecp, EBImage, flexmix, flowCore, flowClust, flowMeans, flowMerge, flowPeaks, foreach, ggplot2, grid, limma, MASS, moments, outliers, parallel, plotrix, raster, readbitmap, reshape2, SamSPECTRAL, waveslim, wavethresh, zoo |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, knitr, rmarkdown, CONFESSdata |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | CONFESS_1.8.0.tar.gz |
| Windows Binary | CONFESS_1.8.0.zip |
| Mac OS X 10.11 (El Capitan) | CONFESS_1.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/CONFESS |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CONFESS |
| Package Short Url | https://bioconductor.org/packages/CONFESS/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.7 | Source Archive |