To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("msd16s")
In most cases, you don't need to download the package archive at all.
msd16s
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Healthy and moderate to severe diarrhea 16S expression data
Bioconductor version: Release (3.5)
Gut 16S sequencing expression data from 992 healthy and moderate-to-severe diarrhetic samples used in 'Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition'.
Author: Joseph N. Paulson, Hector Corrada Bravo, Mihai Pop
Maintainer: Joseph N. Paulson <jpaulson at umiacs.umd.edu>
Citation (from within R,
enter citation("msd16s")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("msd16s")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("msd16s")
| R Script | msd16s | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | ExperimentData, MicrobiomeData, SequencingData |
| Version | 0.110.0 |
| License | Artistic-2.0 |
| Depends | R (>= 2.10), Biobase, metagenomeSeq |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | http://www.cbcb.umd.edu/research/projects/GEMS-pathogen-discovery |
| Depends On Me | |
| Imports Me | |
| Suggests Me | metagenomeFeatures, metavizr |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | msd16s_0.110.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/msd16s |
| Package Short Url | http://bioconductor.org/packages/msd16s/ |
| Package Downloads Report | Download Stats |
Documentation »
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