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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("metavizr")
In most cases, you don't need to download the package archive at all.
metavizr
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R Interface to the metaviz web app for interactive metagenomics data analysis and visualization
Bioconductor version: Release (3.5)
This package provides Websocket communication to the metaviz web app (http://metaviz.cbcb.umd.edu) for interactive visualization of metagenomics data. Objects in R/bioc interactive sessions can be displayed in plots and data can be explored using a facetzoom visualization. Fundamental Bioconductor data structures are supported (e.g., MRexperiment objects), while providing an easy mechanism to support other data structures. Visualizations (using d3.js) can be easily added to the web app as well.
Author: Hector Corrada Bravo [cre, aut], Florin Chelaru [aut], Justin Wagner [aut], Jayaram Kancherla [aut], Joseph Paulson [aut]
Maintainer: Hector Corrada Bravo <hcorrada at gmail.com>
Citation (from within R,
enter citation("metavizr")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("metavizr")
Documentation
| HTML | R Script | Introduction to metavizr |
| Reference Manual | ||
| Text | NEWS | |
| Text | LICENSE |
Details
| biocViews | GUI, Infrastructure, Metagenomics, Software, Visualization |
| Version | 1.0.2 |
| In Bioconductor since | BioC 3.5 (R-3.4) (0.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.3), metagenomeSeq(>= 1.17.1), methods, data.table, Biobase, digest |
| Imports | epivizr, epivizrData, epivizrServer, epivizrStandalone, vegan, GenomeInfoDb, phyloseq, httr |
| LinkingTo | |
| Suggests | knitr, BiocStyle, matrixStats, msd16s(>= 0.109.1), etec16s, testthat, gss |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | metavizr_1.0.2.tar.gz |
| Windows Binary | metavizr_1.0.2.zip |
| Mac OS X 10.11 (El Capitan) | metavizr_1.0.2.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/metavizr |
| Package Short Url | http://bioconductor.org/packages/metavizr/ |
| Package Downloads Report | Download Stats |
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