To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TxDb.Hsapiens.UCSC.hg19.knownGene")

In most cases, you don't need to download the package archive at all.

TxDb.Hsapiens.UCSC.hg19.knownGene

Annotation package for TxDb object(s)

Bioconductor version: Release (3.5)

Exposes an annotation databases generated from UCSC by exposing these as TxDb objects

Author: Marc Carlson, Bioconductor Package Maintainer <maintainer at bioconductor.org> [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("TxDb.Hsapiens.UCSC.hg19.knownGene")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TxDb.Hsapiens.UCSC.hg19.knownGene")


PDF		Reference Manual

biocViews	AnnotationData, Genetics, Homo_sapiens, TxDb
Version	3.2.2
License	Artistic-2.0
Depends	GenomicFeatures(>= 1.21.30)
Imports	AnnotationDbi
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me	chimera, FDb.InfiniumMethylation.hg19, FunciSNP, Homo.sapiens
Imports Me	annotatr, ChIPQC, ChIPseeker, RareVariantVis, rCGH
Suggests Me	AllelicImbalance, AnnotationDbi, ATACseqQC, beadarray, biomvRCNS, biovizBase, BSgenome.Hsapiens.UCSC.hg19, bumphunter, cgdv17, chipenrich.data, ChIPpeakAnno, chromPlot, cpvSNP, CRISPRseek, derfinder, derfinderPlot, GA4GHclient, gage, geneAttribution, GenomicAlignments, GenomicFeatures, GenomicRanges, GenomicScores, GenVisR, ggbio, gmapR, GoogleGenomics, groHMM, GUIDEseq, HTSeqGenie, InPAS, MAST, methyAnalysis, MutationalPatterns, PureCN, R3CPET, regionReport, RiboProfiling, rtracklayer, SGSeq, SigFuge, SplicingGraphs, SummarizedExperiment, trackViewer, transcriptR, tximport, VariantAnnotation, VariantFiltering

Follow Installation instructions to use this package in your R session.

Source Package	TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Package Short Url	http://bioconductor.org/packages/TxDb.Hsapiens.UCSC.hg19.knownGene/
Package Downloads Report	Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Please read the posting guide. Post questions about Bioconductor to one of the following locations: