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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("trackViewer")
In most cases, you don't need to download the package archive at all.
trackViewer
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A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot
Bioconductor version: Release (3.5)
Visualize mapped reads along with annotation as track layers for NGS dataset such as ChIP-seq, RNA-seq, miRNA-seq, DNA-seq, SNPs and methylation data.
Author: Jianhong Ou, Yong-Xu Wang, Lihua Julie Zhu
Maintainer: Jianhong Ou <jianhong.ou at umassmed.edu>
Citation (from within R,
enter citation("trackViewer")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("trackViewer")
Documentation
| HTML | R Script | trackViewer Vignette |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Software, Visualization |
| Version | 1.12.0 |
| In Bioconductor since | BioC 2.14 (R-3.1) (3.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.1.0), grDevices, methods, GenomicRanges, grid |
| Imports | GenomeInfoDb, GenomicAlignments, GenomicFeatures, Gviz, pbapply, Rsamtools, rtracklayer, S4Vectors, scales, tools, IRanges, AnnotationDbi, grImport |
| LinkingTo | |
| Suggests | biomaRt, TxDb.Hsapiens.UCSC.hg19.knownGene, RUnit, org.Hs.eg.db, BiocGenerics, BiocStyle, knitr, VariantAnnotation |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | coMET |
| Imports Me | NADfinder |
| Suggests Me | ATACseqQC, ChIPpeakAnno |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | trackViewer_1.12.0.tar.gz |
| Windows Binary | trackViewer_1.12.0.zip |
| Mac OS X 10.11 (El Capitan) | trackViewer_1.12.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/trackViewer |
| Package Short Url | http://bioconductor.org/packages/trackViewer/ |
| Package Downloads Report | Download Stats |
Documentation »
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