To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Glimma")
In most cases, you don't need to download the package archive at all.
Glimma
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Interactive HTML graphics
Bioconductor version: Release (3.5)
This package generates interactive visualisations for analysis of RNA-sequencing data using output from limma, edgeR or DESeq2 packages in an HTML page. The interactions are built on top of the popular static representations of analysis results in order to provide additional information.
Author: Shian Su, Matthew E. Ritchie, Charity Law, Stuart Lee
Maintainer: Shian Su <su.s at wehi.edu.au>
Citation (from within R,
enter citation("Glimma")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Glimma")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Glimma")
| R Script | Glimma Vignette | |
| Reference Manual | ||
| Text | NEWS | |
| Text | LICENSE |
Details
| biocViews | DifferentialExpression, GeneExpression, Microarray, RNASeq, ReportWriting, Sequencing, Software, Visualization |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (1.5 years) |
| License | GPL-3 | file LICENSE |
| Depends | R (>= 3.3.0) |
| Imports | Biobase, edgeR, grDevices, jsonlite, methods, scater, stats, S4Vectors, utils |
| LinkingTo | |
| Suggests | BiocStyle, DESeq2, limma, testthat, knitr, rmarkdown |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/Shians/Glimma |
| BugReports | https://github.com/Shians/Glimma/issues |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Glimma_1.4.0.tar.gz |
| Windows Binary | Glimma_1.4.0.zip |
| Mac OS X 10.11 (El Capitan) | Glimma_1.4.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Glimma |
| Package Short Url | http://bioconductor.org/packages/Glimma/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
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Support »
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