Bioconductor version: 2.6
Provides high level functions for reading Affy .CEL files, phenotypic data, and then computing simple things with it, such as t-tests, fold changes and the like. Makes heavy use of the affy library. Also has some basic scatter plot functions and mechanisms for generating high resolution journal figures...
Author: Crispin J Miller
Maintainer: Crispin Miller <cmiller at picr.man.ac.uk>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R") biocLite("simpleaffy")
To cite this package in a publication, start R and enter:
citation("simpleaffy")
QCandSimpleaffy.pdf | ||
R Script | simpleaffy primer | |
Reference Manual |
biocViews | Microarray, OneChannel, QualityControl, Preprocessing, Transcription, DataImport, Bioinformatics, DifferentialExpression, Annotation, ReportWriting, Visualization |
Depends | R (>= 2.0.0), affy, genefilter, Biobase, methods, utils, gcrma |
Imports | affy, Biobase, gcrma, genefilter, graphics, grDevices, methods, stats, utils |
Suggests | |
System Requirements | |
License | GPL (>= 2) |
URL | http://www.bioconductor.org, http://bioinformatics.picr.man.ac.uk/simpleaffy/ |
Depends On Me | affyQCReport, yaqcaffy |
Imports Me | arrayMvout, arrayQualityMetrics, yaqcaffy |
Suggests Me | AffyExpress, ArrayTools |
Version | 2.24.0 |
Since | Bioconductor 1.6 (R-2.1) or earlier |
Package Source | simpleaffy_2.24.0.tar.gz |
Windows Binary | simpleaffy_2.24.0.zip (32- & 64-bit) |
MacOS 10.5 (Leopard) binary | simpleaffy_2.24.0.tgz |
Package Downloads Report | Download Stats |
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