arrayQualityMetrics

Quality metrics on microarray data sets

Bioconductor version: 2.6

This package generates a quality metrics report on ExpressionSet, NChannelSet, AffyBatch or BeadLevelList objects containing microarray data with one or two channels.

Author: Audrey Kauffmann, Wolfgang Huber

Maintainer: Audrey Kauffmann <kauffmann at bergonie.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("arrayQualityMetrics")

To cite this package in a publication, start R and enter:

    citation("arrayQualityMetrics")

Documentation

PDF	R Script	arrayQualityMetrics modules
PDF	R Script	Quality assessment with arrayQualityMetrics
PDF		Reference Manual

Details

biocViews	Microarray, QualityControl, OneChannel, TwoChannel, ReportWriting
Depends	affyPLM
Imports	Biobase, RColorBrewer, affy, beadarray, genefilter, grDevices, graphics, hwriter, lattice, latticeExtra, limma, marray, methods, simpleaffy, stats, stats4, utils, vsn
Suggests	ALLMLL, CCl4
System Requirements
License	LGPL (>= 2)
URL
Depends On Me
Imports Me
Suggests Me
Version	2.6.0
Since	Bioconductor 2.1 (R-2.6)

Package Downloads

Package Source	arrayQualityMetrics_2.6.0.tar.gz
Windows Binary	arrayQualityMetrics_2.6.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	arrayQualityMetrics_2.6.0.tgz
Package Downloads Report	Download Stats

Workflows »

Common Bioconductor workflows include:

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Hosting provided by Fred Hutchinson Cancer Research Center