Using R enviroments for annotation.
Author: R. Gentleman
| biocViews |
Annotation, Pathways, GO, Affymetrix |
| Depends |
R (>= 2.4.0), AnnotationDbi(>= 0.1.15) |
| Imports |
Biobase, AnnotationDbi, xtable, graphics, utils, stats, methods |
| Suggests |
Biobase, hgu95av2.db, genefilter, Biostrings(>= 2.4.4), rae230a.db, rae230aprobe, tkWidgets, XML (>= 0.92-2), GO.db, org.Hs.eg.db, org.Mm.eg.db, hom.Hs.inp.db |
| System Requirements |
|
| License |
Artistic-2.0 |
| URL |
|
| Depends On Me |
Agi4x44PreProcess, ChromHeatMap, GeneAnswers, geneplotter, GGtools, GSEABase, idiogram, lumi, macat, MLInterfaces, Neve2006, ontoTools, PCpheno, RpsiXML, safe, ScISI |
| Imports Me |
affycoretools, Category, ChromHeatMap, codelink, genefilter, geneplotter, GlobalAncova, globaltest, GOstats, GSEABase, safe, ScISI, splicegear |
| Suggests Me |
adme16cod.db, ag.db, ath1121501.db, BiocCaseStudies, biomaRt, bovine.db, canine.db, canine2.db, celegans.db, chicken.db, drosgenome1.db, drosophila2.db, geneplotter, GGHumanMethCancerPanelv1.db, GlobalAncova, globaltest, GOstats, GSEAlm, h10kcod.db, h20kcod.db, hcg110.db, hgfocus.db, hgu133a.db, hgu133a2.db, hgu133b.db, hgu133plus2.db, hgu95a.db, hgu95av2.db, hgu95b.db, hgu95c.db, hgu95d.db, hgu95e.db, hguatlas13k.db, hgubeta7.db, hguDKFZ31.db, hgug4100a.db, hgug4101a.db, hgug4110b.db, hgug4111a.db, hgug4112a.db, hguqiagenv3.db, hi16cod.db, hs25kresogen.db, Hs6UG171.db, hthgu133a.db, hthgu133b.db, hu35ksuba.db, hu35ksubb.db, hu35ksubc.db, hu35ksubd.db, hu6800.db, hugene10stprobeset.db, hugene10sttranscriptcluster.db, hugene11stprobeset.db, hugene11sttranscriptcluster.db, HuO22.db, hwgcod.db, illuminaHumanDASLBeadID.db, IlluminaHumanMethylation27k.db, illuminaHumanv1.db, illuminaHumanv1BeadID.db, illuminaHumanv2.db, illuminaHumanv2BeadID.db, illuminaHumanv3.db, illuminaHumanv3BeadID.db, illuminaMousev1.db, illuminaMousev1BeadID.db, illuminaMousev1p1.db, illuminaMousev1p1BeadID.db, illuminaMousev2.db, illuminaMousev2BeadID.db, illuminaRatv1.db, illuminaRatv1BeadID.db, indac.db, JazaeriMetaData.db, LAPOINTE.db, lumiHumanAll.db, lumiMouseAll.db, lumiRatAll.db, m10kcod.db, m20kcod.db, maigesPack, mgu74a.db, mgu74av2.db, mgu74b.db, mgu74bv2.db, mgu74c.db, mgu74cv2.db, mguatlas5k.db, mgug4104a.db, mgug4120a.db, mgug4121a.db, mgug4122a.db, mi16cod.db, mm24kresogen.db, moe430a.db, moe430b.db, mogene10stprobeset.db, mogene10sttranscriptcluster.db, mogene11stprobeset.db, mogene11sttranscriptcluster.db, mouse4302.db, mouse430a2.db, mpedbarray.db, mu11ksuba.db, mu11ksubb.db, Mu15v1.db, mu19ksuba.db, mu19ksubb.db, mu19ksubc.db, Mu22v3.db, mwgcod.db, Norway981.db, nugohs1a520180.db, nugomm1a520177.db, oneChannelGUI, OperonHumanV3.db, org.Ag.eg.db, org.At.tair.db, org.Bt.eg.db, org.Ce.eg.db, org.Cf.eg.db, org.Dm.eg.db, org.Dr.eg.db, org.EcK12.eg.db, org.EcSakai.eg.db, org.Gg.eg.db, org.Hs.eg.db, org.Mm.eg.db, org.Mmu.eg.db, org.Pf.plasmo.db, org.Pt.eg.db, org.Rn.eg.db, org.Sc.sgd.db, org.Sco.eg.db, org.Ss.eg.db, org.Xl.eg.db, PartheenMetaData.db, pedbarrayv10.db, pedbarrayv9.db, POCRCannotation.db, puma, qpgraph, r10kcod.db, rae230a.db, rae230b.db, ragene10stprobeset.db, ragene10sttranscriptcluster.db, ragene11stprobeset.db, ragene11sttranscriptcluster.db, rat2302.db, rgu34a.db, rgu34b.db, rgu34c.db, rguatlas4k.db, rgug4105a.db, rgug4130a.db, rgug4131a.db, ri16cod.db, rnu34.db, Roberts2005Annotation.db, rtu34.db, rwgcod.db, SHDZ.db, siggenes, tigre, u133x3p.db, xlaevis.db, yeast2.db, ygs98.db, zebrafish.db |
| Version |
1.26.1 |
| Since |
Bioconductor 1.6 (R-2.1) or earlier |
