BiocCaseStudies

BiocCaseStudies: Support for the Case Studies Monograph

Bioconductor version: 2.6

Software and data to support the case studies.

Author: R. Gentleman, W. Huber, F. Hahne, M. Morgan, S. Falcon

Maintainer: Biocore Team c/o BioC user list <bioconductor at stat.math.ethz.ch>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("BiocCaseStudies")

To cite this package in a publication, start R and enter:

    citation("BiocCaseStudies")


PDF		Reference Manual

biocViews	Infrastructure, Bioinformatics
Depends	tools, methods, utils, Biobase
Imports
Suggests	affy(>= 1.17.3), affyPLM(>= 1.15.1), affyQCReport(>= 1.17.0), ALL(>= 1.4.3), annaffy(>= 1.11.1), annotate(>= 1.17.3), AnnotationDbi(>= 1.1.6), apComplex(>= 2.5.0), Biobase(>= 1.17.5), bioDist(>= 1.11.3), biocGraph(>= 1.1.1), biomaRt(>= 1.13.5), CCl4(>= 1.0.6), CLL(>= 1.2.4), Category(>= 2.5.0), class (>= 7.2-38), cluster (>= 1.11.9), convert(>= 1.15.0), gcrma(>= 2.11.1), genefilter(>= 1.17.6), geneplotter(>= 1.17.2), GO.db(>= 2.0.2), GOstats(>= 2.5.0), graph(>= 1.17.4), GSEABase(>= 1.1.13), hgu133a.db(>= 2.0.2), hgu95av2.db, hgu95av2cdf(>= 2.0.0), hgu95av2probe(>= 2.0.0), hopach(>= 1.13.0), KEGG.db(>= 2.0.2), kohonen (>= 2.0.2), lattice (>= 0.17.2), latticeExtra (>= 0.3-1), limma(>= 2.13.1), MASS (>= 7.2-38), MLInterfaces(>= 1.13.17), multtest(>= 1.19.0), org.Hs.eg.db(>= 2.0.2), ppiStats(>= 1.5.4), randomForest (>= 4.5-20), RBGL(>= 1.15.6), RColorBrewer (>= 1.0-2), Rgraphviz(>= 1.17.11), vsn(>= 3.4.0), weaver(>= 1.5.0), xtable (>= 1.5-2), yeastExpData(>= 0.9.11)
System Requirements
License	Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me
Version	1.10.0
Since	Bioconductor 2.2 (R-2.7)

Common Bioconductor workflows include:

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!