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This page was generated on 2025-01-16 15:42 -0500 (Thu, 16 Jan 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4746
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 283/431HostnameOS / ArchINSTALLBUILDCHECK
optimalFlowData 1.18.0  (landing page)
Hristo Inouzhe
Snapshot Date: 2025-01-16 07:30 -0500 (Thu, 16 Jan 2025)
git_url: https://git.bioconductor.org/packages/optimalFlowData
git_branch: RELEASE_3_20
git_last_commit: b95d876
git_last_commit_date: 2024-10-29 09:51:11 -0500 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published


CHECK results for optimalFlowData on nebbiolo2

To the developers/maintainers of the optimalFlowData package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: optimalFlowData
Version: 1.18.0
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:optimalFlowData.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings optimalFlowData_1.18.0.tar.gz
StartedAt: 2025-01-16 12:28:24 -0500 (Thu, 16 Jan 2025)
EndedAt: 2025-01-16 12:29:24 -0500 (Thu, 16 Jan 2025)
EllapsedTime: 60.4 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: optimalFlowData.Rcheck
Warnings: 1

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:optimalFlowData.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings optimalFlowData_1.18.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.20-data-experiment/meat/optimalFlowData.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘optimalFlowData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘optimalFlowData’ version ‘1.18.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘optimalFlowData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 97.4Mb
  sub-directories of 1Mb or more:
    data  97.2Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... WARNING
  LazyData DB of 97.2 MB without LazyDataCompression set
  See §1.1.6 of 'Writing R Extensions'
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.20-data-experiment/meat/optimalFlowData.Rcheck/00check.log’
for details.


Installation output

optimalFlowData.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL optimalFlowData
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’
* installing *source* package ‘optimalFlowData’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (optimalFlowData)

Tests output


Example timings

optimalFlowData.Rcheck/optimalFlowData-Ex.timings

nameusersystemelapsed
Cytometry10.0340.0060.040
Cytometry100.0250.0030.029
Cytometry110.0250.0040.030
Cytometry120.0230.0060.030
Cytometry130.0280.0020.031
Cytometry140.0370.0050.042
Cytometry150.0150.0020.016
Cytometry160.0120.0030.016
Cytometry170.0610.0100.073
Cytometry180.0490.0130.062
Cytometry190.0270.0000.028
Cytometry20.0610.0040.064
Cytometry200.0470.0010.048
Cytometry210.0590.0020.061
Cytometry220.0260.0000.026
Cytometry230.0280.0030.033
Cytometry240.0240.0060.032
Cytometry250.0250.0050.031
Cytometry260.0250.0030.028
Cytometry270.0690.0100.081
Cytometry280.0970.0190.117
Cytometry290.0660.0110.079
Cytometry30.0120.0000.014
Cytometry300.0530.0020.056
Cytometry310.0520.0060.058
Cytometry320.0580.0010.061
Cytometry330.0590.0010.061
Cytometry340.0730.0010.074
Cytometry350.0520.0010.053
Cytometry360.0130.0010.013
Cytometry370.0130.0000.013
Cytometry380.0110.0020.013
Cytometry390.0150.0000.014
Cytometry40.0140.0000.013
Cytometry400.0350.0010.036
Cytometry50.0130.0000.014
Cytometry60.0130.0000.013
Cytometry70.0150.0010.015
Cytometry80.0140.0000.014
Cytometry90.0240.0010.024
buildDatabase0.4590.0370.496
cytometry.diagnosis0.0020.0000.002
noise.types0.0010.0000.001