Back to Build/check report for BioC 3.20 experimental data
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This page was generated on 2024-12-10 15:42 -0500 (Tue, 10 Dec 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4739
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 163/431HostnameOS / ArchINSTALLBUILDCHECK
h5vcData 2.26.0  (landing page)
Paul Theodor Pyl
Snapshot Date: 2024-12-10 07:30 -0500 (Tue, 10 Dec 2024)
git_url: https://git.bioconductor.org/packages/h5vcData
git_branch: RELEASE_3_20
git_last_commit: 27c7ea2
git_last_commit_date: 2024-10-29 09:37:56 -0500 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published


CHECK results for h5vcData on nebbiolo2

To the developers/maintainers of the h5vcData package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: h5vcData
Version: 2.26.0
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:h5vcData.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings h5vcData_2.26.0.tar.gz
StartedAt: 2024-12-10 12:33:02 -0500 (Tue, 10 Dec 2024)
EndedAt: 2024-12-10 12:35:44 -0500 (Tue, 10 Dec 2024)
EllapsedTime: 162.3 seconds
RetCode: 0
Status:   OK  
CheckDir: h5vcData.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:h5vcData.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings h5vcData_2.26.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.20-data-experiment/meat/h5vcData.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘h5vcData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘h5vcData’ version ‘2.26.0’
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
 OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘h5vcData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 25.9Mb
  sub-directories of 1Mb or more:
    extdata  25.8Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.20-data-experiment/meat/h5vcData.Rcheck/00check.log’
for details.


Installation output

h5vcData.Rcheck/00install.out

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### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL h5vcData
###
##############################################################################
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* installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’
* installing *source* package ‘h5vcData’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (h5vcData)

Tests output


Example timings

h5vcData.Rcheck/h5vcData-Ex.timings

nameusersystemelapsed
h5vcData-package0.0160.0030.020