| Back to Build/check report for BioC 3.22 experimental data |
|
This page was generated on 2026-02-17 15:53 -0500 (Tue, 17 Feb 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4890 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 277/435 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| NestLink 1.26.0 (landing page) Lennart Opitz
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | ERROR | ||||||||
|
To the developers/maintainers of the NestLink package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: NestLink |
| Version: 1.26.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:NestLink.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings NestLink_1.26.0.tar.gz |
| StartedAt: 2026-02-17 12:45:42 -0500 (Tue, 17 Feb 2026) |
| EndedAt: 2026-02-17 12:58:18 -0500 (Tue, 17 Feb 2026) |
| EllapsedTime: 755.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: NestLink.Rcheck |
| Warnings: NA |
##############################################################################
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###
### Running command:
###
### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:NestLink.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings NestLink_1.26.0.tar.gz
###
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##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck’
* using R version 4.5.2 (2025-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘NestLink/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘NestLink’ version ‘1.26.0’
* checking package namespace information ... OK
* checking package dependencies ... INFO
Depends: includes the non-default packages:
'AnnotationHub', 'ExperimentHub', 'Biostrings', 'gplots', 'protViz',
'ShortRead'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘NestLink’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Authors@R field gives persons with no role:
Damien Morger <damien.morger@rqmicro.com>
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) runNGSAnalysis.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) runNGSAnalysis.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) runNGSAnalysis.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) runNGSAnalysis.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) runNGSAnalysis.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) runNGSAnalysis.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) runNGSAnalysis.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) runNGSAnalysis.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) runNGSAnalysis.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) runNGSAnalysis.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) runNGSAnalysis.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) runNGSAnalysis.Rd:35: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
runNGSAnalysis 134.946 0.705 135.986
getExperimentHubFilename 11.654 0.572 14.182
getFC 5.460 0.299 6.003
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘analyze-flycode-detectibilty.Rmd’ using rmarkdown
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/analyze-flycode-detectibilty_files/figure-html/unnamed-chunk-2-1.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/analyze-flycode-detectibilty_files/figure-html/unnamed-chunk-2-2.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/analyze-flycode-detectibilty_files/figure-html/unnamed-chunk-2-3.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/analyze-flycode-detectibilty_files/figure-html/unnamed-chunk-2-4.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/analyze-flycode-detectibilty_files/figure-html/unnamed-chunk-7-1.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/analyze-flycode-detectibilty_files/figure-html/unnamed-chunk-8-1.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/analyze-flycode-detectibilty_files/figure-html/unnamed-chunk-9-1.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/analyze-flycode-detectibilty_files/figure-html/unnamed-chunk-10-1.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/analyze-flycode-detectibilty_files/figure-html/unnamed-chunk-16-1.png" but not available.
The magick package is required to crop "Figs/NestLink_AAFreqPercent-1.png" but not available.
The magick package is required to crop "Figs/NestLink_FCAAfreqAbsolut-1.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/analyze-flycode-detectibilty_files/figure-html/unnamed-chunk-18-1.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/analyze-flycode-detectibilty_files/figure-html/unnamed-chunk-19-1.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/analyze-flycode-detectibilty_files/figure-html/unnamed-chunk-22-1.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/analyze-flycode-detectibilty_files/figure-html/unnamed-chunk-22-2.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/analyze-flycode-detectibilty_files/figure-html/unnamed-chunk-22-3.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/analyze-flycode-detectibilty_files/figure-html/unnamed-chunk-22-4.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/analyze-flycode-detectibilty_files/figure-html/unnamed-chunk-24-1.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/analyze-flycode-detectibilty_files/figure-html/unnamed-chunk-24-2.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/analyze-flycode-detectibilty_files/figure-html/unnamed-chunk-25-1.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/analyze-flycode-detectibilty_files/figure-html/unnamed-chunk-25-2.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/analyze-flycode-detectibilty_files/figure-html/unnamed-chunk-26-1.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/analyze-flycode-detectibilty_files/figure-html/unnamed-chunk-27-1.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/analyze-flycode-detectibilty_files/figure-html/unnamed-chunk-28-1.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/analyze-flycode-detectibilty_files/figure-html/unnamed-chunk-28-2.png" but not available.
pandoc-citeproc: reference pmid19169246 not found
--- finished re-building ‘analyze-flycode-detectibilty.Rmd’
--- re-building ‘compare-predicted-observed-flycodes.Rmd’ using rmarkdown
Quitting from compare-predicted-observed-flycodes.Rmd:28-43 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `value[[3L]]()`:
! failed to connect
reason: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [bioconductor.org]:
SSL connection timeout
Consider rerunning with 'localHub=TRUE'
---
Backtrace:
▆
1. └─ExperimentHub::ExperimentHub()
2. └─AnnotationHub::.Hub(...)
3. └─base::tryCatch(...)
4. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
5. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
6. └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'compare-predicted-observed-flycodes.Rmd' failed with diagnostics:
failed to connect
reason: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [bioconductor.org]:
SSL connection timeout
Consider rerunning with 'localHub=TRUE'
--- failed re-building ‘compare-predicted-observed-flycodes.Rmd’
--- re-building ‘link-nanobodies-flycodes.Rmd’ using rmarkdown
Warning in in_dir(input_dir(), expr) :
You changed the working directory to /tmp/Rtmpw34hZx (probably via setwd()). It will be restored to /home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes. See the Note section in ?knitr::knit
--- finished re-building ‘link-nanobodies-flycodes.Rmd’
--- re-building ‘make-data.Rmd’ using rmarkdown
--- finished re-building ‘make-data.Rmd’
--- re-building ‘simulate-flycodes.Rmd’ using rmarkdown
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/simulate-flycodes_files/figure-html/unnamed-chunk-8-1.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/simulate-flycodes_files/figure-html/unnamed-chunk-9-1.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/simulate-flycodes_files/figure-html/unnamed-chunk-11-1.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/simulate-flycodes_files/figure-html/unnamed-chunk-17-1.png" but not available.
--- finished re-building ‘simulate-flycodes.Rmd’
--- re-building ‘supplement-note1.Rmd’ using rmarkdown
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/supplement-note1_files/figure-html/pairs-1.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/supplement-note1_files/figure-html/pairs-2.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/supplement-note1_files/figure-html/pairs-3.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/supplement-note1_files/figure-html/pairs-4.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/supplement-note1_files/figure-html/boxplotCV-1.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/supplement-note1_files/figure-html/unnamed-chunk-18-1.png" but not available.
The magick package is required to crop "Figs/NestLink_absolute_flycode_simulation-1.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/supplement-note1_files/figure-html/unnamed-chunk-22-1.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/supplement-note1_files/figure-html/unnamed-chunk-23-1.png" but not available.
The magick package is required to crop "Figs/NestLink_boxplot_techrep_biorep-1.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/supplement-note1_files/figure-html/unnamed-chunk-24-1.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/supplement-note1_files/figure-html/unnamed-chunk-25-1.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/supplement-note1_files/figure-html/unnamed-chunk-25-2.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/supplement-note1_files/figure-html/unnamed-chunk-25-3.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/supplement-note1_files/figure-html/unnamed-chunk-25-4.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/supplement-note1_files/figure-html/unnamed-chunk-26-1.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/supplement-note1_files/figure-html/unnamed-chunk-26-2.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/supplement-note1_files/figure-html/unnamed-chunk-27-1.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/supplement-note1_files/figure-html/unnamed-chunk-28-1.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/supplement-note1_files/figure-html/unnamed-chunk-29-1.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/supplement-note1_files/figure-html/unnamed-chunk-31-1.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/supplement-note1_files/figure-html/unnamed-chunk-33-1.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/supplement-note1_files/figure-html/unnamed-chunk-38-1.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/supplement-note1_files/figure-html/unnamed-chunk-38-2.png" but not available.
The magick package is required to crop "/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/vign_test/NestLink/vignettes/supplement-note1_files/figure-html/unnamed-chunk-38-3.png" but not available.
The magick package is required to crop "Figs/NestLink_relative_flycode_simulation-1.png" but not available.
The magick package is required to crop "Figs/NestLink_relative_flycode_simulation-2.png" but not available.
--- finished re-building ‘supplement-note1.Rmd’
SUMMARY: processing the following file failed:
‘compare-predicted-observed-flycodes.Rmd’
Error: Vignette re-building failed.
Execution halted
* checking PDF version of manual ... OK
* DONE
Status: 1 ERROR, 2 NOTEs
See
‘/home/biocbuild/bbs-3.22-data-experiment/meat/NestLink.Rcheck/00check.log’
for details.
NestLink.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL NestLink ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’ * installing *source* package ‘NestLink’ ... ** this is package ‘NestLink’ version ‘1.26.0’ ** using staged installation ** R ** exec ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (NestLink)
NestLink.Rcheck/tests/testthat.Rout
R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> #R
>
> library(testthat)
>
> suppressPackageStartupMessages(library(NestLink))
>
> test_check("NestLink")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 10 ]
>
> proc.time()
user system elapsed
18.866 1.193 21.000
NestLink.Rcheck/NestLink-Ex.timings
| name | user | system | elapsed | |
| F255744 | 2.511 | 0.083 | 2.941 | |
| NB.unambiguous | 2.822 | 0.103 | 3.212 | |
| NB.unique | 2.847 | 0.056 | 3.144 | |
| PGexport | 1.459 | 0.045 | 1.747 | |
| WU160118 | 3.388 | 0.164 | 3.803 | |
| compose_GPGx8cTerm | 0.006 | 0.000 | 0.006 | |
| compose_GPx10R | 0.005 | 0.000 | 0.005 | |
| compose_GSx7cTerm | 0.007 | 0.000 | 0.007 | |
| dot-ssrc.mascot | 2.252 | 0.115 | 2.606 | |
| getExperimentHubFilename | 11.654 | 0.572 | 14.182 | |
| getFC | 5.460 | 0.299 | 6.003 | |
| getNB | 2.678 | 0.072 | 2.992 | |
| nanobodyFlycodeLinking.as.fasta | 1.394 | 0.041 | 1.680 | |
| nanobodyFlycodeLinking.summary | 1.400 | 0.067 | 1.709 | |
| plot_in_silico_LCMS_map | 1.673 | 0.022 | 1.696 | |
| runNGSAnalysis | 134.946 | 0.705 | 135.986 | |
| twoPatternReadFilter | 0.016 | 0.000 | 0.015 | |