Guillem Rigaill
| Snapshot Date: 2024-12-10 07:30 -0500 (Tue, 10 Dec 2024) |
| git_url: https://git.bioconductor.org/packages/ITALICSData |
| git_branch: RELEASE_3_20 |
| git_last_commit: 425b0e2 |
| git_last_commit_date: 2024-10-29 09:27:12 -0500 (Tue, 29 Oct 2024) |
| Back to Build/check report for BioC 3.20 experimental data |
|
This page was generated on 2024-12-10 15:42 -0500 (Tue, 10 Dec 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4739 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 202/431 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| ITALICSData 2.44.0 (landing page) Guillem Rigaill
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | |||||||
|
To the developers/maintainers of the ITALICSData package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: ITALICSData |
| Version: 2.44.0 |
| Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:ITALICSData.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings ITALICSData_2.44.0.tar.gz |
| StartedAt: 2024-12-10 12:45:08 -0500 (Tue, 10 Dec 2024) |
| EndedAt: 2024-12-10 12:47:57 -0500 (Tue, 10 Dec 2024) |
| EllapsedTime: 168.7 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: ITALICSData.Rcheck |
| Warnings: 1 |
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### Running command:
###
### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:ITALICSData.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings ITALICSData_2.44.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.20-data-experiment/meat/ITALICSData.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘ITALICSData/DESCRIPTION’ ... OK
* this is package ‘ITALICSData’ version ‘2.44.0’
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ITALICSData’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 182.5Mb
sub-directories of 1Mb or more:
extdata 181.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... NOTE
prepare_Rd: Hind.QuartetEffect.Rd:6-8: Dropping empty section \usage
prepare_Rd: Hind.QuartetEffect.Rd:14-16: Dropping empty section \format
prepare_Rd: Hind.QuartetEffect.Rd:17: Dropping empty section \source
prepare_Rd: Hind.QuartetEffect.Rd:18-19: Dropping empty section \references
prepare_Rd: Nsp.QuartetEffect.Rd:6-8: Dropping empty section \usage
prepare_Rd: Nsp.QuartetEffect.Rd:14-16: Dropping empty section \format
prepare_Rd: Nsp.QuartetEffect.Rd:17: Dropping empty section \source
prepare_Rd: Nsp.QuartetEffect.Rd:18-19: Dropping empty section \references
prepare_Rd: Sty.QuartetEffect.Rd:6-8: Dropping empty section \usage
prepare_Rd: Sty.QuartetEffect.Rd:14-16: Dropping empty section \format
prepare_Rd: Sty.QuartetEffect.Rd:17: Dropping empty section \source
prepare_Rd: Sty.QuartetEffect.Rd:18-19: Dropping empty section \references
prepare_Rd: Xba.QuartetEffect.Rd:6-8: Dropping empty section \usage
prepare_Rd: Xba.QuartetEffect.Rd:14-16: Dropping empty section \format
prepare_Rd: Xba.QuartetEffect.Rd:17: Dropping empty section \source
prepare_Rd: Xba.QuartetEffect.Rd:18-19: Dropping empty section \references
prepare_Rd: quartetInfo.Rd:12-14: Dropping empty section \format
prepare_Rd: quartetInfo.Rd:15-17: Dropping empty section \source
prepare_Rd: quartetInfo.Rd:18-19: Dropping empty section \references
prepare_Rd: snpInfo.Rd:12-14: Dropping empty section \format
prepare_Rd: snpInfo.Rd:16-18: Dropping empty section \source
prepare_Rd: snpInfo.Rd:19-20: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
Note: significantly better compression could be obtained
by using R CMD build --resave-data
old_size new_size compress
quartetInfo.RData 727Kb 516Kb xz
snpInfo.RData 68Kb 56Kb xz
* checking examples ... NONE
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 3 NOTEs
See
‘/home/biocbuild/bbs-3.20-data-experiment/meat/ITALICSData.Rcheck/00check.log’
for details.
ITALICSData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL ITALICSData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘ITALICSData’ ... ** using staged installation ** data ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ITALICSData)