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This page was generated on 2025-04-01 18:16 -0400 (Tue, 01 Apr 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 871
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Package 185/217HostnameOS / ArchINSTALLBUILDCHECK
scran 1.35.0  (landing page)
Aaron Lun
Snapshot Date: 2025-04-01 18:00 -0400 (Tue, 01 Apr 2025)
git_url: https://git.bioconductor.org/packages/scran
git_branch: devel
git_last_commit: f18e781
git_last_commit_date: 2024-10-29 10:09:52 -0400 (Tue, 29 Oct 2024)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  ERROR    ERROR  skipped

BUILD results for scran on teran2

To the developers/maintainers of the scran package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: scran
Version: 1.35.0
Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data scran
StartedAt: 2025-04-01 18:15:12 -0400 (Tue, 01 Apr 2025)
EndedAt: 2025-04-01 18:15:13 -0400 (Tue, 01 Apr 2025)
EllapsedTime: 0.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data scran
###
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* checking for file ‘scran/DESCRIPTION’ ... OK
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/combineVar.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/computeMinRank.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/computeSumFactors.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/convertTo.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/correlateGenes.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/correlateNull.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/correlatePairs.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/cyclone.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/decideTestsPerLabel.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/defunct.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/denoisePCA.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/expandPairings.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/findMarkers.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/fitTrendCV2.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/fitTrendPoisson.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/fitTrendVar.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/fixedPCA.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/getClusteredPCs.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/getMarkerEffects.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/getTopHVGs.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/getTopMarkers.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/modelGeneCV2.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/modelGeneCV2WithSpikes.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/modelGeneVar.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/modelGeneVarByPoisson.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/modelGeneVarWithSpikes.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/multiMarkerStats.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/namespace.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/pairwiseBinom.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/pairwiseTTests.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/pairwiseWilcox.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/pseudoBulkDGE.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/pseudoBulkSpecific.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/quickCluster.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/quickSubCluster.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/rhoToPValue.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/sandbag.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/scaledColRanks.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/scoreMarkers.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/summaryMarkerStats.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/testLinearModel.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/utils_markers.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/utils_parallel.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/utils_pca.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/utils_tricube.R': No space left on device
cp: error writing '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/R/utils_variance.R': No space left on device
cp: cannot create directory '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/inst': No space left on device
cp: cannot create directory '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/man': No space left on device
cp: cannot create directory '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/src': No space left on device
cp: cannot create directory '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/tests': No space left on device
cp: cannot create directory '/tmp/Rtmp6oFd4L/Rbuild2ccf0a75b0a990/scran/vignettes': No space left on device
 ERROR
copying to build directory failed