| Back to Rapid builds (Linux only) of a subset of BioC 3.21 Report updated every 6 hours |
This page was generated on 2025-04-01 18:16 -0400 (Tue, 01 Apr 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 871 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 126/217 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | |||||||
| limma 3.63.11 (landing page) Gordon Smyth
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||
|
To the developers/maintainers of the limma package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: limma |
| Version: 3.63.11 |
| Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data limma |
| StartedAt: 2025-04-01 18:14:54 -0400 (Tue, 01 Apr 2025) |
| EndedAt: 2025-04-01 18:14:54 -0400 (Tue, 01 Apr 2025) |
| EllapsedTime: 0.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data limma ### ############################################################################## ############################################################################## * checking for file ‘limma/DESCRIPTION’ ... OK cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/arrayWeightsGeneByGene.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/arrayWeightsPrWtsREML.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/arrayWeightsQuick.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/arrayWeightsREML.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/auROC.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/avearrays.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/background-kooperberg.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/background-normexp.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/background.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/barcodeplot.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/beadCountWeights.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/bwss.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/chooseLowessSpan.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/classes.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/combine.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/contrastAsCoef.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/contrasts.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/convest.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/coolmap.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/cumOverlap.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/decidetests.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/detectionPValues.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/dups.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/ebayes.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/fitFDist.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/fitFDistRobustly.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/fitFDistUnequalDF1.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/fitGammaIntercept.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/fitmixture.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/genas.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/geneset-fry.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/geneset-ids2indices.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/geneset-roast.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/geneset-romer.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/geneset-wilcox.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/goana.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/goanaTrend.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/kegga.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/lmEffects.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/lmfit.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/loessFit.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/logsumexp.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/mergeScans.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/modelmatrix.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/neqc.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/norm.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/plotExonJunc.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/plotExons.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/plotFB.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/plotMD.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/plotSplice.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/plotWithHighlights.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/plotdensities.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/plotlines.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/plotrldf.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/plots-fit.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/plots-image.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/plots-ma.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/poolvar.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/predFCm.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/printtipWeights.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/propTrueNull.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/propexpr.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/qqt.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/rankSumTestWithCorrelation.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/read-ilmn.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/read-imagene.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/read-maimages.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/read.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/read.idat.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/readHeader.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/removeBatchEffect.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/sampleInfoFromGEO.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/selmod.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/sepchannel.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/squeezeVar.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/subsetting.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/topTableF.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/toptable.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/treat.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/tricubeMovingAverage.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/utility.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/venn.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/voom.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/voomWithQualityWeights.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/vooma.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/voomaLmFit.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/weightedLowess.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/weightedmedian.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/weights.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/write.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/wsva.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/zscore.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/zscoreHyper.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/zzz.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/topSplice.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/geneset-cameraPR.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/diffSplice.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/plotMDS.R': No space left on device cp: error writing '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/R/geneset-camera.R': No space left on device cp: cannot create directory '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/inst': No space left on device cp: cannot create directory '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/man': No space left on device cp: cannot create directory '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/src': No space left on device cp: cannot create directory '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/tests': No space left on device cp: cannot create directory '/tmp/Rtmp0D4qke/Rbuild2cc7fb5c41c57e/limma/vignettes': No space left on device ERROR copying to build directory failed