Rapid builds (Linux only) of a subset of BioC 3.21<BR>Report updated every 6 hours - BUILD results for BiocFileCache on teran2

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	871
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BUILD results for BiocFileCache on teran2

To the developers/maintainers of the BiocFileCache package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: BiocFileCache

Version: 2.15.1

Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data BiocFileCache

StartedAt: 2025-04-04 12:21:44 -0400 (Fri, 04 Apr 2025)

EndedAt: 2025-04-04 12:22:16 -0400 (Fri, 04 Apr 2025)

EllapsedTime: 32.1 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data BiocFileCache
###
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* checking for file ‘BiocFileCache/DESCRIPTION’ ... OK
* preparing ‘BiocFileCache’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘BiocFileCache.Rmd’ using rmarkdown
--- finished re-building ‘BiocFileCache.Rmd’

--- re-building ‘BiocFileCache_Troubleshooting.Rmd’ using rmarkdown
--- finished re-building ‘BiocFileCache_Troubleshooting.Rmd’

--- re-building ‘BiocFileCache_UseCases.Rmd’ using rmarkdown

Quitting from BiocFileCache_UseCases.Rmd:191-221 [ensemblremote]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! database or disk is full
---
Backtrace:
     ▆
  1. ├─BiocFileCache::bfcrpath(bfc, c(url, url2))
  2. └─BiocFileCache::bfcrpath(bfc, c(url, url2))
  3.   ├─BiocFileCache::bfcremove(x, rmdx)
  4.   └─BiocFileCache::bfcremove(x, rmdx)
  5.     └─BiocFileCache:::.sql_remove_resource(x, rids)
  6.       └─BiocFileCache:::.sql_db_execute(bfc, cmd)
  7.         ├─DBI::dbExecute(con, sql, params = param)
  8.         └─DBI::dbExecute(con, sql, params = param)
  9.           ├─DBI::dbSendStatement(conn, statement, ...)
 10.           └─DBI::dbSendStatement(conn, statement, ...)
 11.             ├─DBI::dbSendQuery(conn, statement, ...)
 12.             └─RSQLite::dbSendQuery(conn, statement, ...)
 13.               └─RSQLite (local) .local(conn, statement, ...)
 14.                 ├─methods::new(...)
 15.                 │ ├─methods::initialize(value, ...)
 16.                 │ └─methods::initialize(value, ...)
 17.                 └─RSQLite:::result_create(conn@ptr, statement)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'BiocFileCache_UseCases.Rmd' failed with diagnostics:
database or disk is full
--- failed re-building ‘BiocFileCache_UseCases.Rmd’

SUMMARY: processing the following file failed:
  ‘BiocFileCache_UseCases.Rmd’

Error: Vignette re-building failed.
Execution halted