Back to Long Tests report for BioC 3.20

This page was generated on 2024-11-16 23:55 -0500 (Sat, 16 Nov 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4765
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4506
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4538
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 31/32HostnameOS / ArchCHECK
xcms 4.4.0  (landing page)
Steffen Neumann
Snapshot Date: 2024-11-16 09:55 -0500 (Sat, 16 Nov 2024)
git_url: https://git.bioconductor.org/packages/xcms
git_branch: RELEASE_3_20
git_last_commit: 324bb46
git_last_commit_date: 2024-10-29 09:24:25 -0500 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  ERROR  
palomino8Windows Server 2022 Datacenter / x64  ERROR  
lconwaymacOS 12.7.1 Monterey / x86_64  ERROR  

CHECK results for xcms on lconway

To the developers/maintainers of the xcms package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: xcms
Version: 4.4.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no xcms_4.4.0.tar.gz
StartedAt: 2024-11-16 16:31:26 -0500 (Sat, 16 Nov 2024)
EndedAt: 2024-11-16 16:35:14 -0500 (Sat, 16 Nov 2024)
EllapsedTime: 227.9 seconds
RetCode: 1
Status:   ERROR  
CheckDir: xcms.Rcheck
Warnings: NA

Tests output


'R CMD check' output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no xcms_4.4.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.20-bioc-longtests/meat/xcms.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘xcms/DESCRIPTION’ ... OK
* this is package ‘xcms’ version ‘4.4.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
 ERROR
Package suggested but not available: ‘faahKO’

The suggested packages are required for a complete check.
Checking can be attempted without them by setting the environment
variable _R_CHECK_FORCE_SUGGESTS_ to a false value.

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE

Status: 1 ERROR
See
  ‘/Users/biocbuild/bbs-3.20-bioc-longtests/meat/xcms.Rcheck/00check.log’
for details.

Installation output