Back to Long Tests report for BioC 3.20

This page was generated on 2024-12-07 23:55 -0500 (Sat, 07 Dec 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4739
palomino8Windows Server 2022 Datacenterx644.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" 4482
merida1macOS 12.7.5 Montereyx86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4510
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 10/32HostnameOS / ArchCHECK
biodbNcbi 1.10.0  (landing page)
Pierrick Roger
Snapshot Date: 2024-12-07 09:55 -0500 (Sat, 07 Dec 2024)
git_url: https://git.bioconductor.org/packages/biodbNcbi
git_branch: RELEASE_3_20
git_last_commit: b6b4ed9
git_last_commit_date: 2024-10-29 11:09:30 -0500 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  ERROR  
palomino8Windows Server 2022 Datacenter / x64  WARNINGS  
merida1macOS 12.7.5 Monterey / x86_64  WARNINGS  

CHECK results for biodbNcbi on merida1

To the developers/maintainers of the biodbNcbi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbNcbi
Version: 1.10.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.10.0.tar.gz
StartedAt: 2024-12-07 16:01:28 -0500 (Sat, 07 Dec 2024)
EndedAt: 2024-12-07 16:03:56 -0500 (Sat, 07 Dec 2024)
EllapsedTime: 148.8 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: biodbNcbi.Rcheck
Warnings: 1

Tests output

biodbNcbi.Rcheck/tests/testthat.Rout


R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbNci)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbNcbi")
Loading required package: biodbNcbi
biodb.INFO [2024-12-07 16:02:28.878][biodb::testContext]
biodb.INFO [2024-12-07 16:02:28.882][biodb::testContext] ********************************************************************************
biodb.INFO [2024-12-07 16:02:28.883][biodb::testContext] Test context - CCDS long tests
biodb.INFO [2024-12-07 16:02:28.884][biodb::testContext] ********************************************************************************
biodb.INFO [2024-12-07 16:02:28.885][biodb::testContext]
biodb.INFO [2024-12-07 16:02:28.892][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-12-07 16:02:28.894][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-12-07 16:02:28.902][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-07 16:02:28.903][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-12-07 16:02:28.904][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-12-07 16:02:28.906][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:28.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:28.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:28.909][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-12-07 16:02:28.934][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-12-07 16:02:28.936][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:28.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:28.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:28.939][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-12-07 16:02:28.940][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-12-07 16:02:28.941][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:28.942][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:28.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:28.945][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-12-07 16:02:28.946][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-12-07 16:02:28.947][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-12-07 16:02:28.948][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:28.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:28.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:28.952][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-12-07 16:02:28.953][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-12-07 16:02:28.954][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-12-07 16:02:28.955][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:28.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:28.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:28.958][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-12-07 16:02:28.960][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-12-07 16:02:28.961][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:28.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:28.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:28.964][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-12-07 16:02:28.965][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-12-07 16:02:28.967][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-12-07 16:02:28.968][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:28.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:28.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:28.971][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-12-07 16:02:28.972][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-12-07 16:02:28.973][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:28.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:28.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:28.977][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-12-07 16:02:28.978][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-12-07 16:02:28.979][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-12-07 16:02:28.980][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:28.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:28.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:28.983][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-12-07 16:02:28.985][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-12-07 16:02:28.986][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-12-07 16:02:28.987][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-12-07 16:02:28.988][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-12-07 16:02:28.990][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-12-07 16:02:28.991][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:28.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:28.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:28.994][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-12-07 16:02:28.995][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-12-07 16:02:28.996][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:28.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:28.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.000][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-12-07 16:02:29.001][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-12-07 16:02:29.002][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:29.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.005][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-12-07 16:02:29.007][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-12-07 16:02:29.008][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:29.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.011][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-12-07 16:02:29.013][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-12-07 16:02:29.014][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:29.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.017][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-12-07 16:02:29.018][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-12-07 16:02:29.020][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:29.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.023][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-12-07 16:02:29.024][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-12-07 16:02:29.035][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-12-07 16:02:29.036][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:29.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.039][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-12-07 16:02:29.041][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-12-07 16:02:29.042][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-12-07 16:02:29.043][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:29.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.049][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-12-07 16:02:29.100][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:29.122][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-12-07 16:02:29.123][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:29.125][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:02:29.126][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:29.127][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:02:29.128][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:29.130][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-07 16:02:29.131][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-12-07 16:02:29.132][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:02:29.133][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:29.135][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-12-07 16:02:29.136][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:02:29.137][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:29.138][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:29.140][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-07 16:02:29.140][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-07 16:02:29.140][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-07 16:02:29.140][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-12-07 16:02:29.140][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-12-07 16:02:29.141][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-07 16:02:29.142][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:29.143][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:29.145][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:02:29.146][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:29.147][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:29.148][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:02:29.149][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:29.150][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:02:29.152][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:02:29.153][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:29.154][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:29.156][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-12-07 16:02:29.158][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:29.159][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-12-07 16:02:29.160][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:29.162][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:02:29.163][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:29.164][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:02:29.166][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:29.167][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-07 16:02:29.168][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-12-07 16:02:29.169][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:02:29.171][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:29.172][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-12-07 16:02:29.173][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:02:29.175][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:29.176][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:29.177][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-07 16:02:29.177][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-07 16:02:29.177][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-07 16:02:29.177][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-12-07 16:02:29.177][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-12-07 16:02:29.178][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-07 16:02:29.180][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:29.181][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:29.182][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:02:29.183][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:29.184][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:29.185][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:02:29.187][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:29.188][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:02:29.189][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:02:29.190][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:29.192][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:29.193][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-12-07 16:02:29.195][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:29.197][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-12-07 16:02:29.198][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:29.199][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:02:29.200][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:29.202][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:02:29.203][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:29.204][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-07 16:02:29.205][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-12-07 16:02:29.207][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:02:29.208][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:29.209][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-12-07 16:02:29.210][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:02:29.212][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:29.213][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:29.214][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:29.215][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-07 16:02:29.217][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:29.218][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:29.219][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:02:29.220][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:29.221][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:29.222][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:02:29.224][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:29.225][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:02:29.226][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:02:29.227][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:29.228][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:29.230][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-12-07 16:02:29.232][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:29.233][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-12-07 16:02:29.235][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:29.236][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:02:29.237][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:29.238][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:02:29.240][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:29.241][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-07 16:02:29.242][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-12-07 16:02:29.243][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:02:29.245][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:29.246][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-12-07 16:02:29.247][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:02:29.248][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:29.250][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:29.251][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:29.252][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-07 16:02:29.253][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:29.255][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:29.256][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:02:29.257][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:29.258][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:29.259][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:02:29.261][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:29.262][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:02:29.263][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:02:29.264][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:29.265][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:29.269][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-07 16:02:29.271][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.273][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:29.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:29.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:29.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.278][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:29.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:29.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:29.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.284][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:29.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:29.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:29.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.290][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:29.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:29.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:29.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.295][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:29.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:29.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:29.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:29.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:29.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:29.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.306][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:29.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:29.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:29.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.312][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:29.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:29.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:29.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.318][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:29.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:29.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:29.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.328][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:29.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:29.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:29.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.333][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:29.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:29.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:29.337][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.339][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:29.340][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:29.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:29.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.344][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:29.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:29.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:29.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.350][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:29.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:29.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:29.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.355][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:29.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:29.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:29.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.361][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:29.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:29.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:29.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.366][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:29.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:29.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:29.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.372][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-12-07 16:02:29.377][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-12-07 16:02:29.378][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-12-07 16:02:29.380][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-12-07 16:02:29.382][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-12-07 16:02:29.383][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-12-07 16:02:29.385][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-12-07 16:02:29.387][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-12-07 16:02:29.388][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-12-07 16:02:29.390][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-12-07 16:02:29.392][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-12-07 16:02:29.393][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-12-07 16:02:29.395][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-12-07 16:02:29.397][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-12-07 16:02:29.399][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-12-07 16:02:29.400][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-12-07 16:02:29.402][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-12-07 16:02:29.404][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-12-07 16:02:29.405][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-12-07 16:02:29.407][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-12-07 16:02:29.409][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-12-07 16:02:29.411][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-12-07 16:02:29.412][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-12-07 16:02:29.414][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-12-07 16:02:29.416][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-12-07 16:02:29.417][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-12-07 16:02:29.419][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-12-07 16:02:29.421][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-12-07 16:02:29.423][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-12-07 16:02:29.424][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-12-07 16:02:29.426][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-12-07 16:02:29.428][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-12-07 16:02:29.429][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-12-07 16:02:29.431][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-12-07 16:02:29.433][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-12-07 16:02:29.435][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-12-07 16:02:29.436][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-12-07 16:02:29.438][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-12-07 16:02:29.440][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-12-07 16:02:29.442][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-12-07 16:02:29.443][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-12-07 16:02:29.445][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-12-07 16:02:29.447][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-12-07 16:02:29.449][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-12-07 16:02:29.450][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-12-07 16:02:29.452][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-12-07 16:02:29.454][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-12-07 16:02:29.455][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-12-07 16:02:29.457][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-12-07 16:02:29.459][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-12-07 16:02:29.461][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-12-07 16:02:29.462][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-12-07 16:02:29.464][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-12-07 16:02:29.466][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-12-07 16:02:29.468][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-12-07 16:02:29.469][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-12-07 16:02:29.471][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-12-07 16:02:29.473][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-12-07 16:02:29.474][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-12-07 16:02:29.476][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-12-07 16:02:29.478][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-12-07 16:02:29.480][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-12-07 16:02:29.481][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-12-07 16:02:29.483][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-12-07 16:02:29.485][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-12-07 16:02:29.486][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-12-07 16:02:29.488][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-12-07 16:02:29.490][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-12-07 16:02:29.492][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-12-07 16:02:29.493][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-12-07 16:02:29.495][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-12-07 16:02:29.497][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-12-07 16:02:29.499][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-12-07 16:02:29.500][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-12-07 16:02:29.502][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-12-07 16:02:29.504][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-12-07 16:02:29.505][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-12-07 16:02:29.507][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-12-07 16:02:29.509][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-12-07 16:02:29.510][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-12-07 16:02:29.512][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-12-07 16:02:29.514][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-12-07 16:02:29.516][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-12-07 16:02:29.523][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-12-07 16:02:29.525][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2024-12-07 16:02:29.529][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-07 16:02:29.530][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:29.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:29.532][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.539][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:29.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:29.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:29.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:29.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:29.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.552][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:29.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:29.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:29.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:29.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:29.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.560][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:29.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:29.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:29.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:29.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:29.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.567][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:29.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:29.570][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:29.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:29.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:29.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.575][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:29.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:29.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:29.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:29.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:29.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.582][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:29.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:29.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:29.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:29.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:29.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.590][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:29.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:29.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:29.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:29.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:29.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.598][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:29.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:29.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:29.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:29.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:29.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.605][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:29.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:29.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:29.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:29.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:29.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.613][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:29.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:29.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:29.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:29.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:29.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.621][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:29.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:29.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:29.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:29.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:29.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.628][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:29.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:29.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:29.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:29.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:29.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.636][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:29.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:29.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:29.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:29.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:29.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.644][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:29.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:29.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:29.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:29.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:29.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.652][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:29.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:29.654][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:29.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:29.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:29.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.659][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:29.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:29.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:29.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:29.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:29.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.667][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:29.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:29.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:29.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:29.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:29.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:29.676][bdb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-12-07 16:02:29.690][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-12-07 16:02:29.692][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:29.693][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-12-07 16:02:29.694][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:29.696][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:02:29.697][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:29.698][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:02:29.699][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:29.701][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-07 16:02:29.702][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-12-07 16:02:29.703][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:02:29.704][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:29.706][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-12-07 16:02:29.707][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:02:29.708][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-12-07 16:02:29.708][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-12-07 16:02:29.709][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:29.711][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:29.712][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-12-07 16:02:29.713][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:29.714][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:29.716][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:02:29.717][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:29.718][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:29.719][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:02:29.720][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-12-07 16:02:29.720][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-12-07 16:02:29.721][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:02:29.723][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:02:29.724][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:29.725][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:29.727][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-12-07 16:02:29.729][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:29.730][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-12-07 16:02:29.731][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:29.733][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:02:29.734][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:29.735][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:02:29.736][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:29.738][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-07 16:02:29.739][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-12-07 16:02:29.740][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:02:29.741][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:29.743][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-12-07 16:02:29.744][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:02:29.745][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-12-07 16:02:29.745][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-12-07 16:02:29.745][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-12-07 16:02:29.745][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-12-07 16:02:29.745][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-12-07 16:02:29.745][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-12-07 16:02:29.746][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:29.748][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-07 16:02:29.749][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-12-07 16:02:29.750][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:29.751][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:29.753][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:02:29.754][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:29.755][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:29.756][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:02:29.757][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-07 16:02:29.757][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-12-07 16:02:29.759][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:02:29.760][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:02:29.761][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:29.762][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:29.764][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-12-07 16:02:29.766][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:29.790][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-12-07 16:02:29.791][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:29.792][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:02:29.793][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:29.795][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:02:29.796][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:29.797][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-07 16:02:29.798][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-12-07 16:02:29.800][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:02:29.801][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:29.802][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-12-07 16:02:29.803][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:02:29.804][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-12-07 16:02:29.804][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:02:29.804][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:02:29.804][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:02:29.804][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:02:29.804][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:02:29.804][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:02:29.804][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:02:29.804][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:02:29.804][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:02:29.804][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-12-07 16:02:29.804][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:02:29.804][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:02:29.804][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:02:29.806][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:29.807][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-07 16:02:29.807][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-07 16:02:29.807][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-07 16:02:29.809][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-12-07 16:02:29.810][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:29.811][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:29.812][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:02:29.813][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:29.814][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:29.816][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:02:29.817][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-07 16:02:29.817][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-12-07 16:02:29.817][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-12-07 16:02:29.818][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:02:29.819][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:02:29.820][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:29.822][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-12-07 16:02:29.823][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-12-07 16:02:29.826][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:29.827][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-12-07 16:02:29.828][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:29.829][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:02:29.831][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:29.832][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:02:29.833][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:29.834][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-07 16:02:29.836][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-12-07 16:02:29.837][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:02:29.838][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:29.839][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-12-07 16:02:29.841][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:02:29.842][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-12-07 16:02:29.842][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-12-07 16:02:29.843][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:29.844][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:29.846][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-12-07 16:02:29.847][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:29.848][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:29.849][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:02:29.850][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:29.851][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:29.853][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:02:29.854][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-07 16:02:29.854][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-12-07 16:02:29.854][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-12-07 16:02:29.855][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:02:29.856][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:02:29.857][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:29.859][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-12-07 16:02:29.867][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-12-07 16:02:29.868][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-12-07 16:02:29.870][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-12-07 16:02:29.872][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-12-07 16:02:29.874][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-12-07 16:02:29.876][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-12-07 16:02:29.898][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2024-12-07 16:02:29.899][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2024-12-07 16:02:29.904][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2024-12-07 16:02:29.908][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2024-12-07 16:02:29.913][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-07 16:02:29.914][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-07 16:02:29.916][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2024-12-07 16:02:29.917][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-07 16:02:29.919][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-07 16:02:29.920][bdb$getFactory()$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.INFO [2024-12-07 16:02:29.931][biodb::testThat]
biodb.INFO [2024-12-07 16:02:29.933][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-12-07 16:02:29.934][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:02:29.935][biodb::testThat]
biodb.TRACE[2024-12-07 16:02:29.940][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS12227.1-content.html".
biodb.DEBUG[2024-12-07 16:02:29.942][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:29.946][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-12-07 16:02:29.955][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:29.956][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:29.957][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:29.974][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:29.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:29.976][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:29.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:30.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.022][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:30.039][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:30.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.042][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.088][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:30.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:30.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.093][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:30.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:30.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.098][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:30.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:30.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.108][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:30.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:30.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:30.188][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS12227.1.
biodb.TRACE[2024-12-07 16:02:30.191][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:30.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:30.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.196][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:30.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:30.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.236][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:02:30.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:02:30.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.241][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:02:30.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:02:30.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.246][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-07 16:02:30.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-07 16:02:30.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.250][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-07 16:02:30.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-07 16:02:30.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.293][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:30.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:30.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.335][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:30.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:30.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.340][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:30.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:30.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.345][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:30.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:30.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.373][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.374][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.376][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.392][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:30.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:30.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.397][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:30.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:30.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.402][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:30.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:30.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.411][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:30.413][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:30.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.415][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.416][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:30.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:30.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.431][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:30.432][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:30.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.434][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.440][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.442][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.444][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.467][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS43240.1-content.html".
biodb.DEBUG[2024-12-07 16:02:30.515][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:30.517][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-12-07 16:02:30.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:30.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:30.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:30.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:30.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:30.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:30.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:30.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.574][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:30.575][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:30.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.578][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.584][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:30.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:30.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.589][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:30.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:30.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.594][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:30.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:30.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.603][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:30.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:30.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:30.637][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS43240.1.
biodb.TRACE[2024-12-07 16:02:30.666][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:30.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:30.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.671][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:30.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:30.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.676][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:02:30.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:02:30.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.681][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:02:30.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:02:30.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.685][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-07 16:02:30.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-07 16:02:30.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.690][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-07 16:02:30.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-07 16:02:30.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.748][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:30.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:30.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.791][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:30.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:30.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.796][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:30.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:30.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.801][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:30.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:30.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.846][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.848][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.850][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.866][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:30.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:30.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.872][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:30.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:30.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.876][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:30.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:30.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.881][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:30.883][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:30.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.885][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.886][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:30.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:30.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.902][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:30.903][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:30.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.905][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:30.912][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:30.913][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:30.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:30.916][ef$get] fields variable is a list.
biodb.INFO [2024-12-07 16:02:30.926][biodb::testThat]
biodb.INFO [2024-12-07 16:02:30.928][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-12-07 16:02:30.929][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:02:30.930][biodb::testThat]
biodb.DEBUG[2024-12-07 16:02:30.933][private$loadEntries] Creating entries from ids [2]: "CCDS12227.1, CCDS43240.1".
biodb.DEBUG[2024-12-07 16:02:30.940][conn$getEntryContent] Get NCBI CCDS entry content(s) for 2 id(s)...
biodb.TRACE[2024-12-07 16:02:30.944][cch$loadFileContent] Trying to load 2 files from cache: [2]: "CCDS12227.1, CCDS43240.1".
biodb.TRACE[2024-12-07 16:02:31.029][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2024-12-07 16:02:31.074][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS12227.1.html, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html".
biodb.DEBUG[2024-12-07 16:02:31.075][conn$getEntryContent] 2 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:02:31.077][self$createEntryFromContent] Creating NCBI CCDS entries from 2 content(s).
biodb.DEBUG[2024-12-07 16:02:31.078][self$createEntryFromContent] Parsing 2 NCBI CCDS entries.
biodb.DEBUG[2024-12-07 16:02:31.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:31.081][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:31.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:31.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:31.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:31.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:31.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:31.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:31.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:31.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.124][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:31.125][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:31.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.127][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.129][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:31.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:31.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.139][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:31.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:31.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.144][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:31.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:31.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:31.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:31.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.154][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:31.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:31.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:31.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:31.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:31.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:31.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:31.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:31.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:31.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:31.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:31.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:31.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:31.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:31.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:31.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:31.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:31.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:31.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.206][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:31.207][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:31.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.210][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.211][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:31.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:31.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.217][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:31.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:31.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.222][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:31.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:31.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:31.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:31.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.232][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:31.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:31.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:31.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:31.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:31.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:31.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:31.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:31.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:31.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:31.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:31.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:31.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:31.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:31.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:31.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:31.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:31.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:31.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:31.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:31.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:31.283][self$createEntryFromContent] Accession numbers: CCDS12227.1, CCDS43240.1.
biodb.TRACE[2024-12-07 16:02:31.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-12-07 16:02:31.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-12-07 16:02:31.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-12-07 16:02:31.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-12-07 16:02:31.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-12-07 16:02:31.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-12-07 16:02:31.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-12-07 16:02:31.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-12-07 16:02:31.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-12-07 16:02:31.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-12-07 16:02:31.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-12-07 16:02:31.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-12-07 16:02:31.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-07 16:02:31.334][biodb::testThat]
biodb.INFO [2024-12-07 16:02:31.336][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-12-07 16:02:31.337][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:02:31.338][biodb::testThat]
biodb.INFO [2024-12-07 16:02:31.346][biodb::testThat]
biodb.INFO [2024-12-07 16:02:31.347][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-12-07 16:02:31.348][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:02:31.349][biodb::testThat]
biodb.WARN [2024-12-07 16:02:31.376][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2024-12-07 16:02:31.403][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2024-12-07 16:02:31.415][biodb::testThat]
biodb.INFO [2024-12-07 16:02:31.416][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-12-07 16:02:31.418][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:02:31.419][biodb::testThat]
biodb.TRACE[2024-12-07 16:02:31.451][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:31.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:31.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.456][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:31.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:31.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.461][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:02:31.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:02:31.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.466][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:02:31.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:02:31.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.472][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-07 16:02:31.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-07 16:02:31.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.477][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-07 16:02:31.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-07 16:02:31.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.494][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:31.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:31.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.504][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:31.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:31.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.509][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:02:31.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:02:31.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.514][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:02:31.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:02:31.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.519][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-07 16:02:31.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-07 16:02:31.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:31.524][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-07 16:02:31.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-07 16:02:31.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:31.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-07 16:02:31.606][biodb::testThat]
biodb.INFO [2024-12-07 16:02:31.607][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-12-07 16:02:31.609][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:02:31.610][biodb::testThat]
biodb.INFO [2024-12-07 16:02:31.621][biodb::testThat]
biodb.INFO [2024-12-07 16:02:31.622][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-12-07 16:02:31.624][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:02:31.625][biodb::testThat]
biodb.INFO [2024-12-07 16:02:31.634][biodb::testThat]
biodb.INFO [2024-12-07 16:02:31.636][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-12-07 16:02:31.637][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:02:31.638][biodb::testThat]
biodb.DEBUG[2024-12-07 16:02:31.643][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2024-12-07 16:02:33.172][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1.
biodb.INFO [2024-12-07 16:02:34.543][biodb::testThat]
biodb.INFO [2024-12-07 16:02:34.544][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-12-07 16:02:34.546][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:02:34.547][biodb::testThat]
biodb.INFO [2024-12-07 16:02:34.555][bdb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-12-07 16:02:34.556][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2024-12-07 16:02:34.558][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2024-12-07 16:02:34.559][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-12-07 16:02:34.560][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:34.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:34.562][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:34.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:34.564][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:34.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-12-07 16:02:34.578][biodb::testContext]
biodb.INFO [2024-12-07 16:02:34.580][biodb::testContext] ********************************************************************************
biodb.INFO [2024-12-07 16:02:34.581][biodb::testContext] Test context - Gene long tests
biodb.INFO [2024-12-07 16:02:34.582][biodb::testContext] ********************************************************************************
biodb.INFO [2024-12-07 16:02:34.583][biodb::testContext]
biodb.INFO [2024-12-07 16:02:34.586][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-12-07 16:02:34.588][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-12-07 16:02:34.592][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-07 16:02:34.594][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-12-07 16:02:34.595][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-12-07 16:02:34.596][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:34.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:34.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:34.600][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-12-07 16:02:34.601][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-12-07 16:02:34.602][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:34.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:34.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:34.605][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-12-07 16:02:34.607][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-12-07 16:02:34.608][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:34.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:34.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:34.611][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-12-07 16:02:34.612][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-12-07 16:02:34.614][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-12-07 16:02:34.615][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:34.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:34.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:34.618][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-12-07 16:02:34.620][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-12-07 16:02:34.621][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-12-07 16:02:34.622][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:34.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:34.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:34.625][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-12-07 16:02:34.627][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-12-07 16:02:34.628][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:34.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:34.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:34.631][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-12-07 16:02:34.633][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-12-07 16:02:34.634][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-12-07 16:02:34.635][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:34.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:34.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:34.647][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-12-07 16:02:34.648][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-12-07 16:02:34.650][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:34.651][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:34.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:34.653][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-12-07 16:02:34.654][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-12-07 16:02:34.655][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-12-07 16:02:34.657][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:34.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:34.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:34.660][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-12-07 16:02:34.661][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-12-07 16:02:34.663][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-12-07 16:02:34.664][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-12-07 16:02:34.665][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-12-07 16:02:34.667][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-12-07 16:02:34.668][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:34.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:34.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:34.672][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-12-07 16:02:34.673][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-12-07 16:02:34.674][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:34.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:34.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:34.678][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-12-07 16:02:34.679][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-12-07 16:02:34.680][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:34.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:34.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:34.684][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-12-07 16:02:34.685][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-12-07 16:02:34.686][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:34.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:34.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:34.690][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-12-07 16:02:34.691][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-12-07 16:02:34.692][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:34.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:34.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:34.696][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-12-07 16:02:34.697][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-12-07 16:02:34.698][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:34.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:34.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:34.701][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-12-07 16:02:34.703][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-12-07 16:02:34.714][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-12-07 16:02:34.715][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:34.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:34.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:34.719][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-12-07 16:02:34.720][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-12-07 16:02:34.721][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-12-07 16:02:34.722][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:34.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:34.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:34.726][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-12-07 16:02:34.728][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:34.730][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-12-07 16:02:34.731][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:34.732][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:02:34.733][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:34.735][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:02:34.736][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:34.737][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-07 16:02:34.739][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-12-07 16:02:34.740][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:02:34.741][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:34.742][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-12-07 16:02:34.744][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:02:34.745][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:34.746][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:34.747][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-07 16:02:34.747][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-07 16:02:34.747][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-07 16:02:34.747][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-12-07 16:02:34.747][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-12-07 16:02:34.749][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-07 16:02:34.750][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:34.751][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:34.752][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:02:34.753][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:34.754][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:34.756][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:02:34.757][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:34.758][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:02:34.759][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:02:34.761][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:34.762][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:34.763][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-12-07 16:02:34.765][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:34.767][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-12-07 16:02:34.768][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:34.769][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:02:34.770][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:34.772][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:02:34.773][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:34.774][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-07 16:02:34.775][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-12-07 16:02:34.777][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:02:34.778][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:34.779][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-12-07 16:02:34.780][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:02:34.781][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:34.783][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:34.784][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-07 16:02:34.784][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-07 16:02:34.784][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-07 16:02:34.784][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-12-07 16:02:34.784][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-12-07 16:02:34.785][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-07 16:02:34.786][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:34.787][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:34.789][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:02:34.790][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:34.791][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:34.796][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:02:34.798][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:34.799][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:02:34.800][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:02:34.801][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:34.802][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:34.804][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-12-07 16:02:34.806][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:34.807][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-12-07 16:02:34.809][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:34.810][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:02:34.811][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:34.812][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:02:34.813][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:34.815][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-07 16:02:34.816][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-12-07 16:02:34.817][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:02:34.818][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:34.819][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-12-07 16:02:34.821][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:02:34.822][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:34.823][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:34.824][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:34.826][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-07 16:02:34.827][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:34.828][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:34.829][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:02:34.830][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:34.831][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:34.832][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:02:34.834][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:34.835][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:02:34.836][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:02:34.837][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:34.838][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:34.840][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-12-07 16:02:34.842][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:34.843][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-12-07 16:02:34.844][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:34.846][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:02:34.847][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:34.848][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:02:34.849][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:34.851][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-07 16:02:34.852][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-12-07 16:02:34.853][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:02:34.854][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:34.856][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-12-07 16:02:34.857][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:02:34.858][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:34.859][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:34.860][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:34.862][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-07 16:02:34.863][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:34.864][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:34.865][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:02:34.866][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:34.868][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:34.869][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:02:34.870][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:34.871][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:02:34.872][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:02:34.874][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:34.875][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:34.877][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-07 16:02:34.878][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:34.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:34.880][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:34.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:34.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:34.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:34.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:34.886][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:34.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:34.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:34.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:34.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:34.892][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:34.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:34.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:34.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:34.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:34.897][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:34.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:34.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:34.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:34.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:34.903][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:34.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:34.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:34.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:34.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:34.908][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:34.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:34.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:34.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:34.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:34.914][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:34.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:34.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:34.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:34.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:34.919][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:34.921][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:34.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:34.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:34.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:34.925][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:34.926][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:34.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:34.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:34.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:34.930][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:34.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:34.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:34.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:34.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:34.940][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:34.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:34.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:34.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:34.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:34.945][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:34.946][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:34.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:34.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:34.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:34.951][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:34.952][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:34.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:34.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:34.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:34.956][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:34.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:34.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:34.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:34.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:34.962][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:34.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:34.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:34.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:34.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:34.967][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:34.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:34.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:34.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:34.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:34.973][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:34.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:34.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:34.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:34.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:34.979][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-12-07 16:02:34.980][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-12-07 16:02:34.982][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-12-07 16:02:34.984][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-12-07 16:02:34.985][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-12-07 16:02:34.987][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-12-07 16:02:34.989][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-12-07 16:02:34.991][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-12-07 16:02:34.992][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-12-07 16:02:34.994][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-12-07 16:02:34.996][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-12-07 16:02:34.997][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-12-07 16:02:34.999][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-12-07 16:02:35.001][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-12-07 16:02:35.003][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-12-07 16:02:35.004][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-12-07 16:02:35.006][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-12-07 16:02:35.008][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-12-07 16:02:35.009][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-12-07 16:02:35.011][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-12-07 16:02:35.013][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-12-07 16:02:35.015][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-12-07 16:02:35.016][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-12-07 16:02:35.018][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-12-07 16:02:35.020][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-12-07 16:02:35.022][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-12-07 16:02:35.023][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-12-07 16:02:35.025][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-12-07 16:02:35.027][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-12-07 16:02:35.028][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-12-07 16:02:35.030][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-12-07 16:02:35.032][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-12-07 16:02:35.034][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-12-07 16:02:35.036][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-12-07 16:02:35.037][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-12-07 16:02:35.039][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-12-07 16:02:35.041][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-12-07 16:02:35.043][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-12-07 16:02:35.046][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-12-07 16:02:35.048][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-12-07 16:02:35.051][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-12-07 16:02:35.053][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-12-07 16:02:35.055][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-12-07 16:02:35.057][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-12-07 16:02:35.058][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-12-07 16:02:35.060][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-12-07 16:02:35.063][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-12-07 16:02:35.064][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-12-07 16:02:35.066][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-12-07 16:02:35.068][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-12-07 16:02:35.070][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-12-07 16:02:35.076][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-12-07 16:02:35.077][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-12-07 16:02:35.079][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-12-07 16:02:35.081][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-12-07 16:02:35.082][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-12-07 16:02:35.084][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-12-07 16:02:35.086][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-12-07 16:02:35.087][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-12-07 16:02:35.089][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-12-07 16:02:35.091][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-12-07 16:02:35.092][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-12-07 16:02:35.094][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-12-07 16:02:35.096][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-12-07 16:02:35.097][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-12-07 16:02:35.099][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-12-07 16:02:35.101][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-12-07 16:02:35.102][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-12-07 16:02:35.104][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-12-07 16:02:35.106][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-12-07 16:02:35.107][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-12-07 16:02:35.109][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-12-07 16:02:35.111][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-12-07 16:02:35.113][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-12-07 16:02:35.114][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-12-07 16:02:35.116][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-12-07 16:02:35.118][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-12-07 16:02:35.119][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-12-07 16:02:35.121][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-12-07 16:02:35.123][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-12-07 16:02:35.124][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-12-07 16:02:35.126][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-12-07 16:02:35.128][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-12-07 16:02:35.130][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-12-07 16:02:35.132][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2024-12-07 16:02:35.133][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-07 16:02:35.134][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:35.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:35.136][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:35.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:35.138][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:35.139][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:35.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:35.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:35.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:35.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:35.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:35.146][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:35.147][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:35.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:35.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:35.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:35.151][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:35.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:35.154][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:35.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:35.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:35.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:35.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:35.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:35.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:35.161][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:35.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:35.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:35.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:35.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:35.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:35.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:35.169][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:35.170][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:35.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:35.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:35.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:35.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:35.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:35.177][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:35.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:35.179][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:35.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:35.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:35.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:35.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:35.184][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:35.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:35.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:35.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:35.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:35.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:35.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:35.192][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:35.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:35.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:35.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:35.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:35.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:35.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:35.199][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:35.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:35.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:35.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:35.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:35.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:35.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:35.211][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:35.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:35.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:35.214][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:35.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:35.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:35.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:35.218][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:35.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:35.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:35.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:35.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:35.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:35.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:35.226][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:35.227][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:35.228][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:35.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:35.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:35.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:35.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:35.233][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:35.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:35.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:35.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:35.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:35.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:35.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:35.241][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:35.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:35.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:35.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:35.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:35.246][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:35.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:35.248][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:35.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:35.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:35.251][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:35.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:35.253][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:35.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:35.256][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:35.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:35.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:35.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:35.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:35.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:35.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:35.263][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:02:35.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:35.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:35.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:35.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:35.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:35.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:35.272][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-12-07 16:02:35.274][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-12-07 16:02:35.276][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:35.278][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-12-07 16:02:35.279][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:35.280][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:02:35.281][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:35.282][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:02:35.284][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:35.285][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-07 16:02:35.286][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-12-07 16:02:35.287][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:02:35.288][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:35.290][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-12-07 16:02:35.291][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:02:35.292][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-12-07 16:02:35.292][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-12-07 16:02:35.293][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:35.295][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:35.296][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-12-07 16:02:35.297][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:35.298][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:35.299][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:02:35.300][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:35.301][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:35.303][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:02:35.304][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-12-07 16:02:35.304][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-12-07 16:02:35.305][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:02:35.306][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:02:35.307][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:35.308][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:35.310][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-12-07 16:02:35.312][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:35.313][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-12-07 16:02:35.314][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:35.316][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:02:35.317][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:35.318][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:02:35.319][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:35.320][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-07 16:02:35.322][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-12-07 16:02:35.323][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:02:35.324][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:35.325][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-12-07 16:02:35.327][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:02:35.328][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-12-07 16:02:35.328][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-12-07 16:02:35.328][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-12-07 16:02:35.328][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-12-07 16:02:35.328][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-12-07 16:02:35.328][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-12-07 16:02:35.329][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:35.331][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-07 16:02:35.332][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-12-07 16:02:35.333][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:35.334][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:35.335][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:02:35.340][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:35.342][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:35.343][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:02:35.344][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-07 16:02:35.344][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-12-07 16:02:35.345][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:02:35.346][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:02:35.347][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:35.349][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:35.350][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-12-07 16:02:35.352][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:35.354][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-12-07 16:02:35.355][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:35.356][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:02:35.357][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:35.359][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:02:35.360][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:35.361][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-07 16:02:35.362][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-12-07 16:02:35.363][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:02:35.365][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:35.366][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-12-07 16:02:35.367][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:02:35.368][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-12-07 16:02:35.368][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:02:35.368][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:02:35.368][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:02:35.368][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:02:35.368][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:02:35.368][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:02:35.368][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:02:35.368][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:02:35.368][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:02:35.368][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-12-07 16:02:35.368][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:02:35.368][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:02:35.368][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:02:35.370][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:35.371][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-07 16:02:35.371][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-07 16:02:35.371][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-07 16:02:35.372][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-12-07 16:02:35.374][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:35.375][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:35.376][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:02:35.377][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:35.378][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:35.379][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:02:35.381][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-07 16:02:35.381][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-12-07 16:02:35.381][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-12-07 16:02:35.382][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:02:35.383][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:02:35.384][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:35.385][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-12-07 16:02:35.387][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-12-07 16:02:35.389][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:35.391][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-12-07 16:02:35.392][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:35.393][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:02:35.394][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:35.396][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:02:35.397][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:35.398][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-07 16:02:35.399][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-12-07 16:02:35.401][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:02:35.402][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:35.403][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-12-07 16:02:35.404][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:02:35.406][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-12-07 16:02:35.406][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-12-07 16:02:35.407][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-07 16:02:35.408][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:02:35.409][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-12-07 16:02:35.411][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:35.412][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:35.413][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:02:35.414][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:02:35.415][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:02:35.417][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:02:35.418][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-07 16:02:35.418][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-12-07 16:02:35.418][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-12-07 16:02:35.419][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:02:35.420][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:02:35.421][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-07 16:02:35.423][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-12-07 16:02:35.424][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-12-07 16:02:35.426][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-12-07 16:02:35.428][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-12-07 16:02:35.430][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-12-07 16:02:35.432][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-12-07 16:02:35.434][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-12-07 16:02:35.443][super$initialize] Initialize connector ncbi.gene.
biodb.DEBUG[2024-12-07 16:02:35.444][super$initialize] Register connector ncbi.gene with the request scheduler
biodb.DEBUG[2024-12-07 16:02:35.445][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.gene.
biodb.DEBUG[2024-12-07 16:02:35.447][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2024-12-07 16:02:35.449][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-07 16:02:35.450][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-07 16:02:35.452][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2024-12-07 16:02:35.453][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-07 16:02:35.454][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-07 16:02:35.540][biodb$getFactory()$createConn] Creating new connector ncbi.gene for database class ncbi.gene .
biodb.INFO [2024-12-07 16:02:35.545][biodb::testThat]
biodb.INFO [2024-12-07 16:02:35.546][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-12-07 16:02:35.547][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:02:35.549][biodb::testThat]
biodb.TRACE[2024-12-07 16:02:35.554][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-2833-content.xml".
biodb.DEBUG[2024-12-07 16:02:35.556][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:35.560][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-12-07 16:02:35.562][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:35.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:35.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:35.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:35.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:35.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:35.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:35.588][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:35.589][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:35.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.592][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:35.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:35.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:35.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:35.599][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:35.600][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:35.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.603][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:35.605][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:35.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:35.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:35.610][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:35.611][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:35.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.614][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:35.621][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:35.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:35.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:35.627][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:35.628][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:35.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.630][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:35.632][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:35.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:35.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:35.637][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:35.638][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:35.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.641][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:35.643][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:35.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:35.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:35.648][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:35.649][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:35.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.651][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:35.654][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:35.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:35.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:35.664][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:35.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:35.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:35.669][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:35.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:35.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:35.674][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:35.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:35.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:35.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:35.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:35.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:35.684][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:35.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:35.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:35.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:35.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:35.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:35.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:35.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:35.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:35.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:35.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:35.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:35.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:35.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:35.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:35.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:35.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:35.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:35.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:35.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:35.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:35.719][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2833.
biodb.TRACE[2024-12-07 16:02:35.722][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:35.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:35.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:35.727][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:35.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:35.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:35.732][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:35.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:35.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:35.737][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:35.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:35.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:35.742][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:35.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:35.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:35.751][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-12-07 16:02:35.791][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2024-12-07 16:02:35.793][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2024-12-07 16:02:35.794][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2024-12-07 16:02:35.817][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-12-07 16:02:35.818][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-07 16:02:35.819][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-12-07 16:02:35.837][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-07 16:02:35.838][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-07 16:02:35.840][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-12-07 16:02:35.841][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-07 16:02:35.842][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-12-07 16:02:35.843][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-07 16:02:35.845][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-07 16:02:35.868][self$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.DEBUG[2024-12-07 16:02:35.869][private$loadEntries] Creating entries from ids [1]: "CCDS14416.1".
biodb.DEBUG[2024-12-07 16:02:35.871][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:02:35.874][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14416.1".
biodb.TRACE[2024-12-07 16:02:35.875][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:02:35.877][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14416.1.html".
biodb.DEBUG[2024-12-07 16:02:35.879][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:02:35.880][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:35.882][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-12-07 16:02:35.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:35.885][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:35.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:35.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:35.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:35.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:35.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:35.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:35.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:35.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:35.942][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:35.944][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:35.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.946][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:35.948][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:35.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:35.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:35.953][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:35.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:35.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:35.958][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:35.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:35.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:35.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:35.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:35.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:35.968][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:35.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:35.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:35.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:35.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:35.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:35.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:35.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:35.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:35.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:35.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:35.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:35.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:35.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:35.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:35.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:35.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:35.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:35.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:36.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:36.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:36.006][self$createEntryFromContent] Accession numbers: CCDS14416.1.
biodb.TRACE[2024-12-07 16:02:36.008][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:36.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:36.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.013][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:36.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:36.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.018][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:36.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:36.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.023][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:02:36.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:02:36.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.028][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:02:36.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:02:36.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.032][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-07 16:02:36.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-07 16:02:36.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.037][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-07 16:02:36.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-07 16:02:36.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:36.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:36.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.053][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:36.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:36.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:36.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:36.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:36.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:36.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:36.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:36.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:36.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:36.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:36.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:36.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:36.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:36.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.094][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:36.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:36.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.138][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:36.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:36.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.143][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:36.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:36.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:36.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:36.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:36.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:36.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:36.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:36.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.170][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:36.171][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:36.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.174][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:36.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:36.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.190][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:36.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:36.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.195][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:36.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:36.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.200][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:36.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:36.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.205][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:36.206][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:36.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.208][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.210][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:36.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:36.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.224][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:36.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:36.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.229][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:36.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:36.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.234][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:36.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:36.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.239][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:36.241][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:36.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.243][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.244][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:36.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:36.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.259][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:36.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:36.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.268][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:36.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:36.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.273][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:36.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:36.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.278][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:36.279][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:36.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.282][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.283][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:36.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:36.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.297][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:36.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:36.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.302][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:36.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:36.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.307][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:36.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:36.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.312][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:36.313][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:36.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.316][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.317][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:36.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:36.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.331][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:36.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:36.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.336][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:36.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:36.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.341][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:36.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:36.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.346][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:36.347][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:36.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.350][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.351][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:36.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:36.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.365][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:36.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:36.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.370][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:36.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:36.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.375][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:36.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:36.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.380][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:36.381][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:36.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.384][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.389][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:36.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:36.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.404][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:36.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:36.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.409][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:36.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:36.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.414][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:36.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:36.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.419][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:36.420][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:36.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.422][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.424][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:36.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:36.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.438][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:36.440][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:36.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.442][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.448][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:36.450][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:36.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.452][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.458][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:36.459][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:36.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.462][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.467][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:36.469][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:36.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.471][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.477][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:36.479][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:36.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.481][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.488][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:36.489][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:36.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.491][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.497][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:36.499][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:36.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.501][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.507][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:36.509][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:36.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.511][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.524][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3002-content.xml".
biodb.DEBUG[2024-12-07 16:02:36.526][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:36.528][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-12-07 16:02:36.530][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:36.531][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:36.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:36.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:36.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:36.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:36.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:36.555][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:36.556][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:36.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.558][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:36.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:36.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.565][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:36.567][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:36.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.569][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.571][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:36.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:36.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.576][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:36.577][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:36.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.580][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.581][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:36.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:36.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.587][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:36.588][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:36.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.590][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.592][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:36.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:36.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.597][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:36.598][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:36.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.601][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.603][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:36.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:36.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.608][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:36.609][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:36.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.612][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.615][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:36.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:36.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.623][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:36.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:36.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.629][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:36.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:36.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.634][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:36.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:36.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:36.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:36.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.643][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:36.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:36.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:36.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:36.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:36.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:36.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:36.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:36.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:36.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:36.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:36.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:36.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:36.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:36.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:36.683][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3002.
biodb.TRACE[2024-12-07 16:02:36.686][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:36.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:36.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.690][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:36.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:36.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.695][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:36.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:36.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.700][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:36.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:36.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:36.705][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:36.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:36.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:36.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:36.710][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-12-07 16:02:36.711][private$loadEntries] Creating entries from ids [1]: "CCDS9633.1".
biodb.DEBUG[2024-12-07 16:02:36.780][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:02:36.802][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS9633.1".
biodb.TRACE[2024-12-07 16:02:36.804][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:02:36.805][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:02:36.806][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:02:36.808][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-12-07 16:02:36.809][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:02:36.810][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:02:36.816][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:36.817][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:36.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:36.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:36.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:36.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:36.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:36.830][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.DEBUG[2024-12-07 16:02:36.858][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:02:36.859][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:02:36.860][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.TRACE[2024-12-07 16:02:38.185][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1).
biodb.DEBUG[2024-12-07 16:02:39.454][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:02:39.456][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.content"
biodb.TRACE[2024-12-07 16:02:39.476][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.request"
biodb.TRACE[2024-12-07 16:02:39.488][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS9633.1.html"
biodb.DEBUG[2024-12-07 16:02:39.490][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:02:39.492][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:39.494][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-12-07 16:02:39.496][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:39.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:39.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:39.504][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:39.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:39.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:39.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:39.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:39.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:39.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.531][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:39.532][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:39.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.535][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.536][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:39.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:39.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.542][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:39.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:39.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.547][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:39.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:39.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:39.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:39.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.557][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:39.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:39.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:39.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:39.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:39.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:39.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:39.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:39.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:39.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:39.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:39.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:39.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:39.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:39.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:39.593][self$createEntryFromContent] Accession numbers: CCDS9633.1.
biodb.TRACE[2024-12-07 16:02:39.606][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:39.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:39.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.616][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:39.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:39.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.623][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:39.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:39.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.628][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:02:39.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:02:39.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.634][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:02:39.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:02:39.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.639][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-07 16:02:39.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-07 16:02:39.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.644][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-07 16:02:39.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-07 16:02:39.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:39.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:39.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.660][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:39.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:39.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:39.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:39.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:39.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:39.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:39.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:39.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:39.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:39.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:39.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:39.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:39.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:39.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.703][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:39.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:39.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.708][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:39.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:39.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:39.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:39.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:39.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:39.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:39.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:39.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:39.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:39.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.746][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:39.748][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:39.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.750][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:39.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:39.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.766][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:39.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:39.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.772][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:39.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:39.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.777][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:39.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:39.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.782][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:39.783][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:39.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.785][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.787][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:39.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:39.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.802][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:39.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:39.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.807][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:39.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:39.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.812][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:39.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:39.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.817][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:39.818][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:39.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.821][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.822][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:39.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:39.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.837][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:39.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:39.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.842][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:39.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:39.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.847][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:39.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:39.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.852][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:39.854][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:39.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.856][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.857][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:39.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:39.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.878][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:39.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:39.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.883][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:39.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:39.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.888][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:39.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:39.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.893][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:39.895][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:39.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.897][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.898][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:39.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:39.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.914][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:39.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:39.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.919][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:39.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:39.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.924][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:39.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:39.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.929][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:39.930][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:39.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.933][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.934][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:39.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:39.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.949][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:39.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:39.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.954][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:39.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:39.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.959][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:39.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:39.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.964][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:39.966][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:39.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.968][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.969][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:39.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:39.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.984][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:39.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:39.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.994][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:39.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:39.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:39.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:39.999][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:40.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:40.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.004][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:40.005][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:40.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.008][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.009][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:40.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:40.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.024][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:40.025][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:40.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.027][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.034][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:40.035][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:40.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.038][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.044][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.045][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.048][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.054][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:40.055][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:40.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.058][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.064][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:40.066][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:40.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.068][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.074][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:40.076][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:40.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.078][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.085][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:40.086][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:40.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.088][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.095][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:40.096][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:40.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.098][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.111][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3627-content.xml".
biodb.DEBUG[2024-12-07 16:02:40.113][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:40.114][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-12-07 16:02:40.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:40.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:40.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:40.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:40.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:40.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:40.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:40.156][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.158][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.160][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.168][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:40.169][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:40.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.171][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.174][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:40.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:40.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.179][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:40.180][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:40.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.183][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.185][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:40.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:40.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.190][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:40.191][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:40.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.194][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.196][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:40.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:40.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.201][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:40.202][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:40.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.205][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.207][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:40.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:40.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.212][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:40.214][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:40.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.216][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.220][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:40.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:40.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.228][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:40.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:40.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.233][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:40.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:40.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.238][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:40.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:40.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.248][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:40.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:40.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:40.293][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3627.
biodb.TRACE[2024-12-07 16:02:40.295][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:40.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:40.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.300][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:40.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:40.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.305][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:40.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:40.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.310][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:40.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:40.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.315][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:40.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:40.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:40.320][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-12-07 16:02:40.322][private$loadEntries] Creating entries from ids [1]: "CCDS43240.1".
biodb.DEBUG[2024-12-07 16:02:40.323][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:02:40.325][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS43240.1".
biodb.TRACE[2024-12-07 16:02:40.327][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:02:40.328][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html".
biodb.DEBUG[2024-12-07 16:02:40.330][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:02:40.331][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:40.333][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-12-07 16:02:40.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:40.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:40.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:40.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:40.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:40.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:40.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:40.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.367][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:40.368][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:40.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.370][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.372][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:40.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:40.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.377][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:40.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:40.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.382][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:40.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:40.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.392][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:40.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:40.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:40.430][self$createEntryFromContent] Accession numbers: CCDS43240.1.
biodb.TRACE[2024-12-07 16:02:40.432][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:40.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:40.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.437][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:40.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:40.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.442][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:40.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:40.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.447][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:02:40.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:02:40.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.451][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:02:40.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:02:40.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.456][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-07 16:02:40.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-07 16:02:40.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.461][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-07 16:02:40.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-07 16:02:40.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.477][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:40.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:40.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.523][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:40.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:40.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.528][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:40.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:40.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.533][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:40.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:40.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.560][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.561][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.563][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.579][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:40.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:40.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.584][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:40.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:40.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.589][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:40.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:40.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.594][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:40.595][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:40.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.598][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.599][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:40.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:40.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.614][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:40.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:40.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.619][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:40.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:40.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.624][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:40.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:40.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.629][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:40.630][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:40.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.632][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.634][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:40.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:40.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.653][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:40.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:40.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.658][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:40.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:40.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.663][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:40.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:40.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.668][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:40.669][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:40.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.671][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.672][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:40.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:40.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.687][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:40.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:40.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.692][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:40.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:40.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.698][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:40.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:40.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.702][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:40.704][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:40.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.706][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.707][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:40.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:40.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.723][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:40.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:40.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.728][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:40.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:40.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.733][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:40.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:40.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.738][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:40.739][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:40.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.741][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.743][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:40.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:40.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.762][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:40.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:40.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.768][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:40.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:40.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.773][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:40.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:40.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.778][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:40.779][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:40.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.782][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.783][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:40.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:40.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.798][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:40.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:40.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.803][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:40.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:40.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.808][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:40.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:40.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.813][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:40.814][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:40.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.817][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.818][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:40.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:40.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.833][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:40.834][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:40.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.837][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.843][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:40.845][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:40.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.847][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.853][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.855][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.857][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.863][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:40.865][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:40.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.867][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.873][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:40.875][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:40.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.877][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.888][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:40.890][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:40.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.892][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.899][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:40.900][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:40.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.902][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.909][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:40.910][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:40.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.912][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.922][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-4316-content.xml".
biodb.DEBUG[2024-12-07 16:02:40.924][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:40.925][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-12-07 16:02:40.927][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:40.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:40.929][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:40.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:40.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:40.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:40.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:40.955][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.956][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.958][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:40.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:40.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.966][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:40.967][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:40.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.969][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.971][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:40.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:40.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.977][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:40.978][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:40.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.980][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.982][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:40.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:40.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.987][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:40.989][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:40.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.991][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.993][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:40.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:40.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:40.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:40.998][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:41.000][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:41.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.002][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.004][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:41.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:41.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.009][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:41.010][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:41.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.013][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.016][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:41.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:41.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.023][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:41.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:41.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.033][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:41.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:41.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.038][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:41.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:41.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:41.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:41.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.048][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:41.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:41.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:41.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:41.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:41.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:41.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:41.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:41.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:41.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:41.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:41.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:41.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:41.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:41.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:41.083][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 4316.
biodb.TRACE[2024-12-07 16:02:41.086][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:41.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:41.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.091][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:41.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:41.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.096][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:41.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:41.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.101][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:41.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:41.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:41.106][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:41.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:41.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:41.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:41.111][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-12-07 16:02:41.112][private$loadEntries] Creating entries from ids [1]: "CCDS8317.1".
biodb.DEBUG[2024-12-07 16:02:41.113][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:02:41.115][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS8317.1".
biodb.TRACE[2024-12-07 16:02:41.117][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:02:41.119][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:02:41.120][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:02:41.121][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-12-07 16:02:41.123][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:02:41.124][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:02:41.143][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:41.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:41.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:41.166][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:41.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:41.168][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:41.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:41.199][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.DEBUG[2024-12-07 16:02:41.221][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:02:41.223][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:02:41.245][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.TRACE[2024-12-07 16:02:42.613][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1).
biodb.DEBUG[2024-12-07 16:02:43.940][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:02:43.942][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.content"
biodb.TRACE[2024-12-07 16:02:43.947][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.request"
biodb.TRACE[2024-12-07 16:02:43.951][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS8317.1.html"
biodb.DEBUG[2024-12-07 16:02:43.953][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:02:43.955][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:43.956][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-12-07 16:02:43.966][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:43.967][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:43.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:43.974][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:43.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:43.977][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:43.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:43.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:43.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:44.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.003][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:44.004][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:44.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.007][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.009][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:44.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:44.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.014][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:44.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:44.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.019][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:44.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:44.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:44.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:44.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.029][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:44.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:44.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:44.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:44.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:44.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:44.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:44.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:44.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:44.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:44.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:44.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:44.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:44.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:44.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:44.064][self$createEntryFromContent] Accession numbers: CCDS8317.1.
biodb.TRACE[2024-12-07 16:02:44.065][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:44.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:44.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.070][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:44.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:44.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.075][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:44.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:44.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.080][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:02:44.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:02:44.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.085][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:02:44.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:02:44.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.097][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-07 16:02:44.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-07 16:02:44.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.102][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-07 16:02:44.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-07 16:02:44.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:44.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:44.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.118][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:44.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:44.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:44.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:44.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:44.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:44.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:44.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:44.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:44.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:44.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:44.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:44.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:44.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:44.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.161][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:44.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:44.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.166][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:44.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:44.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.171][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:44.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:44.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:44.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:44.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:44.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:44.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:44.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:44.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.199][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:44.200][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:44.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.203][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:44.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:44.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.348][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:44.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:44.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.353][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:44.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:44.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.358][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:44.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:44.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.363][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:44.364][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:44.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.366][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.367][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:44.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:44.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.382][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:44.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:44.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.387][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:44.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:44.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.391][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:44.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:44.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.396][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:44.398][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:44.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.400][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.401][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:44.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:44.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.416][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:44.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:44.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.421][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:44.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:44.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.426][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:44.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:44.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.431][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:44.432][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:44.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.435][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.436][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:44.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:44.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.451][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:44.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:44.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.456][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:44.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:44.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.461][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:44.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:44.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.466][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:44.467][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:44.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.470][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.471][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:44.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:44.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.486][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:44.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:44.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.492][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:44.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:44.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.498][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:44.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:44.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.504][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:44.505][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:44.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.508][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.509][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:44.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:44.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.527][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:44.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:44.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.533][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:44.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:44.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.539][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:44.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:44.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.545][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:44.546][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:44.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.549][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.551][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:44.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:44.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.568][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:44.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:44.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.574][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:44.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:44.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.580][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:44.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:44.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.586][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:44.588][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:44.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.591][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.592][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:44.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:44.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.610][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:44.612][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:44.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.614][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.622][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:44.624][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:44.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.627][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.634][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:44.636][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:44.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.638][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.646][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:44.647][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:44.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.650][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.657][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:44.659][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:44.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.662][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.669][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:44.671][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:44.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.674][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.681][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:44.683][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:44.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.686][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.692][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:44.694][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:44.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.696][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.712][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-50943-content.xml".
biodb.DEBUG[2024-12-07 16:02:44.714][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:44.715][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-12-07 16:02:44.717][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:44.719][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:44.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:44.727][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:44.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:44.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:44.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:44.768][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:44.769][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:44.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.772][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:44.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:44.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.781][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:44.783][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:44.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.786][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.789][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:44.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:44.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.796][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:44.797][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:44.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.800][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.804][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:44.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:44.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.810][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:44.812][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:44.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.815][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.818][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:44.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:44.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.825][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:44.826][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:44.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.829][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.832][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:44.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:44.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.839][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:44.841][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:44.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.843][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.850][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:44.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:44.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.864][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:44.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:44.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.871][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:44.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:44.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.877][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:44.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:44.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:44.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:44.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.889][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:44.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:44.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:44.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:44.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:44.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:44.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:44.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:44.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:44.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:44.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:44.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:44.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:44.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:44.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:44.944][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 50943.
biodb.TRACE[2024-12-07 16:02:44.946][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:44.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:44.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.951][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:44.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:44.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.956][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:44.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:44.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.961][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:44.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:44.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:44.966][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:44.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:44.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:44.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:44.971][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-12-07 16:02:44.972][private$loadEntries] Creating entries from ids [1]: "CCDS14323.1".
biodb.DEBUG[2024-12-07 16:02:44.974][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:02:44.975][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14323.1".
biodb.TRACE[2024-12-07 16:02:44.977][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:02:44.978][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:02:44.980][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:02:44.981][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-12-07 16:02:44.982][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:02:44.983][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:02:44.987][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:44.988][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:44.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:44.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:44.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:44.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:44.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:45.000][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.DEBUG[2024-12-07 16:02:45.004][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:02:45.005][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:02:45.006][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.TRACE[2024-12-07 16:02:46.339][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1).
biodb.DEBUG[2024-12-07 16:02:47.614][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:02:47.616][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.content"
biodb.TRACE[2024-12-07 16:02:47.621][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.request"
biodb.TRACE[2024-12-07 16:02:47.625][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14323.1.html"
biodb.DEBUG[2024-12-07 16:02:47.627][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:02:47.629][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:47.630][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-12-07 16:02:47.632][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:47.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:47.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:47.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:47.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:47.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:47.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:47.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:47.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:47.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.675][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:47.676][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:47.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.679][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.680][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:47.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:47.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.686][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:47.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:47.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.690][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:47.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:47.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:47.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:47.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.700][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:47.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:47.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:47.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:47.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:47.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:47.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:47.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:47.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:47.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:47.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:47.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:47.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:47.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:47.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:47.735][self$createEntryFromContent] Accession numbers: CCDS14323.1.
biodb.TRACE[2024-12-07 16:02:47.736][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:47.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:47.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.741][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:47.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:47.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.746][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:47.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:47.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.751][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:02:47.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:02:47.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.756][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:02:47.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:02:47.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.761][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-07 16:02:47.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-07 16:02:47.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.766][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-07 16:02:47.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-07 16:02:47.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:47.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:47.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.782][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:47.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:47.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:47.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:47.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:47.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:47.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:47.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:47.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:47.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:47.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:47.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:47.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:47.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:47.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.824][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:47.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:47.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.829][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:47.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:47.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.834][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:47.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:47.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:47.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:47.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:47.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:47.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:47.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:47.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.862][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:47.863][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:47.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.865][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:47.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:47.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.882][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:47.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:47.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.887][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:47.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:47.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.892][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:47.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:47.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.897][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:47.898][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:47.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.901][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.902][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:47.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:47.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.917][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:47.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:47.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.922][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:47.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:47.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.927][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:47.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:47.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.932][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:47.933][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:47.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.935][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.937][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:47.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:47.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.951][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:47.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:47.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.957][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:47.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:47.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.962][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:47.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:47.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.967][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:47.968][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:47.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.970][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.972][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:47.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:47.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.987][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:47.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:47.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.992][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:47.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:47.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:47.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:47.997][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:47.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:48.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.002][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:48.004][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:48.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.006][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.012][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:48.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:48.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.032][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:48.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:48.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.037][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:48.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:48.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.042][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:48.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:48.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.047][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:48.048][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:48.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.050][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.052][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:48.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:48.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.066][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:48.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:48.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.072][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:48.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:48.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.077][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:48.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:48.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.081][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:48.083][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:48.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.085][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.086][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:48.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:48.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.101][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:48.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:48.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.106][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:48.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:48.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.111][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:48.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:48.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.116][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:48.117][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:48.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.120][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.121][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:48.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:48.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.136][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:48.137][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:48.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.140][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.146][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:48.147][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:48.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.150][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.156][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:48.157][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:48.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.160][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.166][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:48.168][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:48.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.170][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.176][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:48.178][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:48.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.180][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.187][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:48.188][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:48.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.190][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.197][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:48.198][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:48.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.201][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.207][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:48.208][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:48.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.211][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.222][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-5551-content.xml".
biodb.DEBUG[2024-12-07 16:02:48.224][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:48.226][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-12-07 16:02:48.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:48.229][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:48.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:48.236][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:48.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:48.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:48.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:48.252][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:48.254][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:48.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.256][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:48.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:48.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.263][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:48.264][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:48.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.266][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.268][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:48.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:48.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.273][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:48.275][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:48.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.277][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.279][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:48.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:48.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.284][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:48.285][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:48.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.287][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.289][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:48.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:48.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.294][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:48.295][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:48.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.298][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.299][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:48.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:48.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.304][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:48.306][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:48.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.308][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.311][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:48.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:48.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.317][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:48.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:48.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.323][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:48.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:48.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.327][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:48.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:48.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:48.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:48.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.337][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:48.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:48.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:48.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:48.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:48.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:48.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:48.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:48.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:48.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:48.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:48.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:48.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:48.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:48.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:48.371][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 5551.
biodb.TRACE[2024-12-07 16:02:48.373][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:48.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:48.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.378][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:48.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:48.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.383][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:48.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:48.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.388][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:48.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:48.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:48.393][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:48.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:48.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:48.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:48.398][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-12-07 16:02:48.399][private$loadEntries] Creating entries from ids [1]: "CCDS7305.1".
biodb.DEBUG[2024-12-07 16:02:48.400][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:02:48.402][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS7305.1".
biodb.TRACE[2024-12-07 16:02:48.404][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:02:48.405][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:02:48.406][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:02:48.407][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-12-07 16:02:48.409][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:02:48.410][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:02:48.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:48.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:48.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:48.422][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:48.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:48.424][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:48.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:48.426][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.DEBUG[2024-12-07 16:02:48.430][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:02:48.431][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:02:48.433][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.TRACE[2024-12-07 16:02:49.838][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1).
biodb.DEBUG[2024-12-07 16:02:51.132][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:02:51.135][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.content"
biodb.TRACE[2024-12-07 16:02:51.140][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.request"
biodb.TRACE[2024-12-07 16:02:51.144][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS7305.1.html"
biodb.DEBUG[2024-12-07 16:02:51.146][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:02:51.148][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:51.149][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-12-07 16:02:51.151][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:51.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:51.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:51.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:51.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:51.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:51.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:51.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:51.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:51.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.193][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:51.194][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:51.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.197][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.199][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:51.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:51.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.204][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:51.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:51.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.221][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:51.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:51.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:51.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:51.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.231][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:51.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:51.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:51.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:51.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:51.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:51.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:51.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:51.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:51.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:51.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:51.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:51.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:51.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:51.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:51.270][self$createEntryFromContent] Accession numbers: CCDS7305.1.
biodb.TRACE[2024-12-07 16:02:51.271][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:51.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:51.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.276][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:51.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:51.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.281][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:51.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:51.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.286][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:02:51.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:02:51.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.291][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:02:51.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:02:51.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.296][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-07 16:02:51.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-07 16:02:51.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.301][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-07 16:02:51.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-07 16:02:51.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:51.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:51.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.317][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:51.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:51.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:51.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:51.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:51.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:51.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:51.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:51.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:51.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:51.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:51.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:51.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:51.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:51.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.358][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:51.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:51.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.363][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:51.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:51.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.368][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:51.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:51.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:51.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:51.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:51.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:51.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:51.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:51.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.395][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:51.396][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:51.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.398][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:51.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:51.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.414][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:51.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:51.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.419][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:51.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:51.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.424][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:51.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:51.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.429][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:51.430][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:51.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.433][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.434][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:51.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:51.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.449][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:51.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:51.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.454][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:51.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:51.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.459][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:51.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:51.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.464][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:51.465][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:51.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.467][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.469][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:51.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:51.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.484][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:51.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:51.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.489][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:51.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:51.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.494][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:51.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:51.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.499][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:51.500][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:51.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.502][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.504][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:51.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:51.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.518][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:51.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:51.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.523][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:51.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:51.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.528][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:51.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:51.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.533][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:51.534][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:51.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.536][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.538][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:51.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:51.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.552][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:51.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:51.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.557][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:51.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:51.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.562][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:51.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:51.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.567][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:51.568][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:51.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.571][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.572][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:51.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:51.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.587][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:51.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:51.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.592][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:51.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:51.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.597][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:51.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:51.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.602][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:51.603][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:51.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.605][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.607][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:51.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:51.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.622][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:51.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:51.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.627][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:51.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:51.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.632][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:51.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:51.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.637][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:51.638][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:51.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.640][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.642][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:51.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:51.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.657][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:51.658][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:51.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.660][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.667][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:51.668][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:51.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.671][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.683][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:51.684][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:51.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.686][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.692][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:51.694][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:51.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.696][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.702][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:51.703][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:51.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.706][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.712][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:51.713][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:51.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.715][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.722][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:51.723][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:51.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.725][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.731][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:51.733][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:51.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.735][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.744][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-916-content.xml".
biodb.DEBUG[2024-12-07 16:02:51.746][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:51.747][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-12-07 16:02:51.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:51.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:51.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:51.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:51.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:51.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:51.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:51.772][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:51.774][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:51.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.776][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:51.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:51.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.783][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:51.784][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:51.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.786][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.788][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:51.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:51.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.793][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:51.794][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:51.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.796][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.798][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:51.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:51.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.803][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:51.804][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:51.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.807][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.808][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:51.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:51.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.813][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:51.815][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:51.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.817][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.819][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:51.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:51.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.824][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:51.825][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:51.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.827][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.830][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:51.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:51.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.837][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:51.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:51.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.842][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:51.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:51.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.847][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:51.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:51.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:51.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:51.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.856][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:51.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:51.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:51.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:51.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:51.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:51.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:51.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:51.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:51.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:51.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:51.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:51.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:51.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:51.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:51.890][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 916.
biodb.TRACE[2024-12-07 16:02:51.893][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:51.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:51.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.898][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:51.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:51.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.903][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:51.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:51.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.907][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:51.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:51.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:51.912][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:51.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:51.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:51.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:51.917][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-12-07 16:02:51.918][private$loadEntries] Creating entries from ids [1]: "CCDS31685.1".
biodb.DEBUG[2024-12-07 16:02:51.920][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:02:51.921][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS31685.1".
biodb.TRACE[2024-12-07 16:02:51.923][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:02:51.924][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:02:51.926][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:02:51.927][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-12-07 16:02:51.928][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:02:51.929][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:02:51.933][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:51.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:51.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:51.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:51.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:51.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:51.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:02:51.946][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.DEBUG[2024-12-07 16:02:51.950][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:02:51.951][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:02:51.953][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.TRACE[2024-12-07 16:02:53.324][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1).
biodb.DEBUG[2024-12-07 16:02:54.645][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:02:54.648][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.content"
biodb.TRACE[2024-12-07 16:02:54.653][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.request"
biodb.TRACE[2024-12-07 16:02:54.656][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS31685.1.html"
biodb.DEBUG[2024-12-07 16:02:54.658][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:02:54.660][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:54.661][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-12-07 16:02:54.663][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:54.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:54.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:54.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:54.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:54.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:54.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:54.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:54.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:54.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.701][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:54.702][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:54.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.705][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.706][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:54.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:54.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.712][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:54.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:54.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.717][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:54.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:54.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:54.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:54.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.727][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:54.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:54.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:54.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:54.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:54.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:54.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:54.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:54.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:54.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:54.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:54.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:54.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:54.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:54.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:54.762][self$createEntryFromContent] Accession numbers: CCDS31685.1.
biodb.TRACE[2024-12-07 16:02:54.763][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:54.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:54.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.769][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:54.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:54.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.774][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:54.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:54.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.779][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:02:54.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:02:54.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.784][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:02:54.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:02:54.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.790][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-07 16:02:54.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-07 16:02:54.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.795][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-07 16:02:54.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-07 16:02:54.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:54.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:54.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.812][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:54.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:54.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:54.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:54.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:54.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:54.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:54.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:54.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:54.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:54.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:54.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:54.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:54.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:54.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.865][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:54.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:54.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.870][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:54.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:54.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.875][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:54.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:54.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:54.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:54.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:54.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:54.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:54.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:54.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.902][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:54.903][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:54.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.905][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:54.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:54.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.921][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:54.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:54.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.926][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:54.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:54.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.931][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:54.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:54.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.936][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:54.937][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:54.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.940][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.941][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:54.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:54.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.955][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:54.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:54.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.961][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:54.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:54.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.966][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:54.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:54.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.971][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:54.972][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:54.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.974][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.976][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:54.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:54.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.991][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:54.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:54.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:54.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:54.996][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:54.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:54.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.001][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:55.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:55.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.006][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:55.007][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:55.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.009][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.011][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:55.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:55.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.025][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:55.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:55.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.030][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:55.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:55.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.035][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:55.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:55.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.040][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:55.041][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:55.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.044][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.045][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:55.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:55.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.059][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:55.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:55.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.064][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:55.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:55.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.069][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:55.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:55.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.074][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:55.075][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:55.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.078][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.079][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:55.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:55.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.094][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:55.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:55.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.099][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:55.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:55.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.103][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:55.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:55.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.108][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:55.110][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:55.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.112][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.113][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:55.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:55.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.128][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:55.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:55.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.133][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:55.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:55.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.138][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:55.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:55.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.143][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:55.144][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:55.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.147][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.148][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-12-07 16:02:55.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:55.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.163][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:55.165][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:55.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.169][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.176][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:55.177][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:55.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.179][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.186][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:55.188][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:55.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.190][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.197][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:55.199][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:55.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.201][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.209][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:55.210][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:55.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.213][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.219][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:55.221][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:55.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.223][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.230][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:55.231][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:55.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.234][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.240][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:55.241][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:55.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.244][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.251][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-9606-content.xml".
biodb.DEBUG[2024-12-07 16:02:55.252][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:02:55.254][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-12-07 16:02:55.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:55.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:55.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:55.264][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:55.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:55.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:55.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:55.270][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:55.272][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:55.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.274][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:55.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:55.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.281][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:55.282][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:55.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.284][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.286][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:55.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:55.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.292][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:55.293][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:55.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.296][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.297][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:55.299][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:55.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.301][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.302][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:55.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:55.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.307][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:55.309][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:55.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.311][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.313][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:55.314][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:55.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.316][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.318][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:55.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:55.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.329][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:55.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:55.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:55.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:55.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.339][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:55.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:55.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:55.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:55.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:55.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:55.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:55.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:55.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:55.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:55.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:55.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:55.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:55.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:55.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:55.374][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 9606.
biodb.TRACE[2024-12-07 16:02:55.376][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:55.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:55.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.381][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:55.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:55.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.387][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:55.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:55.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.392][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:02:55.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:02:55.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.397][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:02:55.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:02:55.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.402][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-07 16:02:55.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-07 16:02:55.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.407][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-07 16:02:55.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-07 16:02:55.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:55.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:55.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.439][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:55.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:55.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:55.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:55.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:55.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:55.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:55.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:55.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:55.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:55.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:55.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:55.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:55.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:55.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.481][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:55.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:55.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.486][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:55.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:55.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.491][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:55.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:55.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:55.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:55.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:55.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:55.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:55.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:55.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.518][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:55.519][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:55.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.522][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:55.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:55.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.538][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:55.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:55.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.543][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:55.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:55.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.548][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:55.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:55.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.553][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:55.554][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:55.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.557][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.558][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:55.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:55.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.573][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:55.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:55.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.578][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:55.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:55.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.583][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:55.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:55.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.588][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:55.589][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:55.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.592][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.593][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:55.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:55.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.609][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:55.610][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:55.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.613][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.619][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:55.621][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:55.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.623][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.630][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:55.631][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:55.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.634][ef$get] fields variable is a list.
biodb.INFO [2024-12-07 16:02:55.644][biodb::testThat]
biodb.INFO [2024-12-07 16:02:55.646][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-12-07 16:02:55.647][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:02:55.648][biodb::testThat]
biodb.DEBUG[2024-12-07 16:02:55.651][private$loadEntries] Creating entries from ids [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.DEBUG[2024-12-07 16:02:55.652][conn$getEntryContent] Get NCBI Gene entry content(s) for 8 id(s)...
biodb.TRACE[2024-12-07 16:02:55.654][cch$loadFileContent] Trying to load 8 files from cache: [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.TRACE[2024-12-07 16:02:55.657][cch$loadFileContent] file.exist = [8]: "TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE".
biodb.TRACE[2024-12-07 16:02:55.736][loadFileContents] Loaded 8 files from cache: [8]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/2833.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3002.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3627.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/4316.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/50943.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/5551.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/916.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/9606.xml".
biodb.DEBUG[2024-12-07 16:02:55.737][conn$getEntryContent] 8 NCBI Gene entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:02:55.739][self$createEntryFromContent] Creating NCBI Gene entries from 8 content(s).
biodb.DEBUG[2024-12-07 16:02:55.740][self$createEntryFromContent] Parsing 8 NCBI Gene entries.
biodb.DEBUG[2024-12-07 16:02:55.742][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:55.743][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:55.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:55.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:55.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:55.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:55.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:55.768][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:55.769][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:55.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.772][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:55.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:55.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.779][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:55.780][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:55.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.782][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.784][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:55.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:55.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.789][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:55.791][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:55.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.793][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.795][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:55.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:55.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.800][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:55.801][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:55.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.804][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.806][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:55.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:55.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.811][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:55.812][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:55.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.815][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.817][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:55.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:55.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.822][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:55.824][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:55.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.826][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.829][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:55.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:55.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.838][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:55.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:55.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.844][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:55.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:55.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.849][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:55.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:55.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:55.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:55.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.859][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:55.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:55.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:55.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:55.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:55.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:55.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:55.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:55.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:55.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:55.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:55.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:55.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:55.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:55.890][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:55.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:55.906][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:55.907][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:55.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.915][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:55.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:55.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.925][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:55.926][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:55.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.928][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.930][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:55.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:55.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.936][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:55.937][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:55.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.939][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.941][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:55.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:55.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.946][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:55.948][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:55.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.950][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.952][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:55.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:55.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.957][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:55.958][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:55.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.961][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.963][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:55.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:55.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.968][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:55.969][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:55.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.971][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.975][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:55.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:55.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.984][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:55.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:55.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.989][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:55.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:55.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.994][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:55.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:55.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:55.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:55.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.004][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:56.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:56.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:56.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:56.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:56.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:56.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:56.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:56.035][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:56.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:56.059][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.061][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.063][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.071][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:56.072][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:56.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.074][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.077][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:56.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:56.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.082][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:56.083][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:56.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.086][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.088][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:56.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:56.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.093][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:56.095][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:56.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.097][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.099][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:56.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:56.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.104][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:56.106][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:56.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.108][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.111][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:56.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:56.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.116][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:56.117][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:56.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.119][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.124][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:56.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:56.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.132][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:56.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:56.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.137][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:56.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:56.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.142][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:56.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:56.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.152][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:56.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:56.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:56.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:56.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:56.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:56.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:56.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:56.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:56.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:56.202][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.203][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.206][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.213][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:56.214][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:56.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.217][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.219][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:56.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:56.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.224][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:56.225][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:56.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.228][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.230][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:56.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:56.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.235][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:56.237][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:56.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.239][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.241][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:56.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:56.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.246][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:56.248][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:56.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.250][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.252][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:56.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:56.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.257][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:56.259][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:56.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.261][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.264][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:56.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:56.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.271][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:56.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:56.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.277][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:56.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:56.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.282][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:56.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:56.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.292][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:56.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:56.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:56.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:56.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:56.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:56.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:56.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:56.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:56.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:56.364][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.366][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.368][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.377][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:56.378][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:56.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.380][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.384][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:56.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:56.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.389][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:56.390][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:56.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.393][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.396][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:56.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:56.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.401][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:56.402][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:56.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.404][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.407][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:56.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:56.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.413][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:56.414][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:56.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.416][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.420][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:56.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:56.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.425][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:56.426][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:56.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.429][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.435][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:56.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:56.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.448][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:56.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:56.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.453][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:56.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:56.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.458][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:56.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:56.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.468][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:56.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:56.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:56.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:56.501][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:56.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:56.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:56.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:56.511][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:56.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:56.523][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.525][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.527][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.534][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:56.536][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:56.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.538][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.540][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:56.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:56.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.545][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:56.546][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:56.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.549][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.551][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:56.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:56.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.556][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:56.557][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:56.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.559][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.561][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:56.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:56.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.567][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:56.568][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:56.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.570][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.572][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:56.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:56.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.577][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:56.579][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:56.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.581][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.584][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:56.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:56.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.591][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:56.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:56.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.596][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:56.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:56.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.601][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:56.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:56.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.611][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:56.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:56.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:56.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:56.632][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:56.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:56.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:56.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:56.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:56.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:56.655][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.656][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.659][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.666][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:56.667][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:56.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.669][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.671][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:56.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:56.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.676][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:56.678][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:56.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.680][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.682][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:56.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:56.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.687][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:56.688][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:56.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.691][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.693][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:56.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:56.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.698][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:56.699][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:56.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.701][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.703][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:56.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:56.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.709][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:56.710][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:56.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.712][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.715][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:56.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:56.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.722][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:56.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:56.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.727][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:56.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:56.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.732][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:56.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:56.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.742][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:56.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:56.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:56.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:02:56.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:02:56.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:02:56.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:02:56.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:02:56.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:02:56.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:02:56.777][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.778][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.780][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.787][ef$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:56.788][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:56.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.791][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.792][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-12-07 16:02:56.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-12-07 16:02:56.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.797][ef$get] Asked field names are: location.
biodb.TRACE[2024-12-07 16:02:56.799][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-12-07 16:02:56.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.801][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.803][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:56.804][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:56.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.806][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.808][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-12-07 16:02:56.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-12-07 16:02:56.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.813][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-12-07 16:02:56.814][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:56.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.817][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.818][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:56.820][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-12-07 16:02:56.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.822][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.824][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:56.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:56.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.829][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:56.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:56.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.839][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:56.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-12-07 16:02:56.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:02:56.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:02:56.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:56.992][self$createEntryFromContent] Accession numbers: 2833, 3002, 3627, 4316, 50943, 5551, 916, 9606.
biodb.TRACE[2024-12-07 16:02:56.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-12-07 16:02:56.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-12-07 16:02:56.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:56.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:56.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-12-07 16:02:56.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-12-07 16:02:57.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.003][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-12-07 16:02:57.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-12-07 16:02:57.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-12-07 16:02:57.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-12-07 16:02:57.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-12-07 16:02:57.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-12-07 16:02:57.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-12-07 16:02:57.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-12-07 16:02:57.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-12-07 16:02:57.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-12-07 16:02:57.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-12-07 16:02:57.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-12-07 16:02:57.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-12-07 16:02:57.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-12-07 16:02:57.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-12-07 16:02:57.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-12-07 16:02:57.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-12-07 16:02:57.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-12-07 16:02:57.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-12-07 16:02:57.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-12-07 16:02:57.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-12-07 16:02:57.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-12-07 16:02:57.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-12-07 16:02:57.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-12-07 16:02:57.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-12-07 16:02:57.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-12-07 16:02:57.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-12-07 16:02:57.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-12-07 16:02:57.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-12-07 16:02:57.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-12-07 16:02:57.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-12-07 16:02:57.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-12-07 16:02:57.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-12-07 16:02:57.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-12-07 16:02:57.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-12-07 16:02:57.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-12-07 16:02:57.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-12-07 16:02:57.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-12-07 16:02:57.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-12-07 16:02:57.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-12-07 16:02:57.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-12-07 16:02:57.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-12-07 16:02:57.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-12-07 16:02:57.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-12-07 16:02:57.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-07 16:02:57.160][biodb::testThat]
biodb.INFO [2024-12-07 16:02:57.161][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-12-07 16:02:57.162][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:02:57.163][biodb::testThat]
biodb.TRACE[2024-12-07 16:02:57.167][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:57.168][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:57.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.171][ef$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:57.172][function(conn, opt)] Testing searchForEntries() with entry "2833" and field "name".
biodb.TRACE[2024-12-07 16:02:57.188][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:57.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:57.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.193][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:57.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:57.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.198][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:57.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:57.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:57.206][function(conn, opt)] With value "GPR9".
biodb.DEBUG[2024-12-07 16:02:57.213][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2024-12-07 16:02:57.218][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:02:57.220][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21e81c63f052370fa801f15c9311a3f4".
biodb.TRACE[2024-12-07 16:02:57.221][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:02:57.223][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content".
biodb.DEBUG[2024-12-07 16:02:57.225][function(conn, opt)] With found IDs [1]: "2833".
biodb.INFO [2024-12-07 16:02:57.244][biodb::testThat]
biodb.INFO [2024-12-07 16:02:57.245][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-12-07 16:02:57.246][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:02:57.248][biodb::testThat]
biodb.TRACE[2024-12-07 16:02:57.261][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:57.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:57.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.266][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:57.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:57.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.271][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:02:57.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:02:57.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:57.311][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2024-12-07 16:02:57.315][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:02:57.317][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21e81c63f052370fa801f15c9311a3f4".
biodb.TRACE[2024-12-07 16:02:57.319][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:02:57.320][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content".
biodb.INFO [2024-12-07 16:02:57.340][biodb::testThat]
biodb.INFO [2024-12-07 16:02:57.342][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-12-07 16:02:57.343][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:02:57.344][biodb::testThat]
biodb.TRACE[2024-12-07 16:02:57.357][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:57.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:57.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.362][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:57.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:57.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.367][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:57.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:57.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.372][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:57.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:57.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.377][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:57.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:02:57.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:02:57.383][private$computeField] Compute value for field "aa.seq".
biodb.TRACE[2024-12-07 16:02:57.384][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:57.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:57.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.389][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:57.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:57.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.394][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:57.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:57.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.400][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:02:57.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:02:57.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.405][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:02:57.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:02:57.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.410][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-07 16:02:57.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-07 16:02:57.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.415][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-07 16:02:57.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-07 16:02:57.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.421][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:57.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:57.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.426][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:02:57.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:02:57.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.431][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:02:57.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:02:57.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.436][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:02:57.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:02:57.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.442][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-07 16:02:57.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-07 16:02:57.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:02:57.447][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-07 16:02:57.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-07 16:02:57.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:02:57.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-07 16:02:57.463][biodb::testThat]
biodb.INFO [2024-12-07 16:02:57.465][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-12-07 16:02:57.466][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:02:57.467][biodb::testThat]
biodb.INFO [2024-12-07 16:02:57.481][biodb::testThat]
biodb.INFO [2024-12-07 16:02:57.482][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-12-07 16:02:57.484][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:02:57.485][biodb::testThat]
biodb.INFO [2024-12-07 16:02:57.494][biodb::testThat]
biodb.INFO [2024-12-07 16:02:57.495][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-12-07 16:02:57.497][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:02:57.498][biodb::testThat]
biodb.DEBUG[2024-12-07 16:02:57.502][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/gene?term=2833".
biodb.DEBUG[2024-12-07 16:03:04.658][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/gene?term=2833.
biodb.INFO [2024-12-07 16:03:08.088][biodb::testThat]
biodb.INFO [2024-12-07 16:03:08.089][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-12-07 16:03:08.090][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:03:08.091][biodb::testThat]
biodb.INFO [2024-12-07 16:03:08.099][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-12-07 16:03:08.100][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.gene from the request scheduler
biodb.INFO [2024-12-07 16:03:08.102][self$deleteConn] Connector "ncbi.gene" deleted.
biodb.DEBUG[2024-12-07 16:03:08.103][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2024-12-07 16:03:08.113][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2024-12-07 16:03:08.114][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-12-07 16:03:08.115][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:08.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:08.118][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:08.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:08.120][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-12-07 16:03:08.125][biodb::testContext]
biodb.INFO [2024-12-07 16:03:08.126][biodb::testContext] ********************************************************************************
biodb.INFO [2024-12-07 16:03:08.127][biodb::testContext] Test context - Pubchem comp long tests
biodb.INFO [2024-12-07 16:03:08.129][biodb::testContext] ********************************************************************************
biodb.INFO [2024-12-07 16:03:08.130][biodb::testContext]
biodb.INFO [2024-12-07 16:03:08.132][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-12-07 16:03:08.134][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-12-07 16:03:08.138][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-07 16:03:08.139][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-12-07 16:03:08.141][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-12-07 16:03:08.142][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.143][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.145][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-12-07 16:03:08.146][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-12-07 16:03:08.147][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.151][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-12-07 16:03:08.152][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-12-07 16:03:08.153][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.156][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-12-07 16:03:08.158][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-12-07 16:03:08.159][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-12-07 16:03:08.160][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.163][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-12-07 16:03:08.165][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-12-07 16:03:08.166][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-12-07 16:03:08.167][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.170][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-12-07 16:03:08.172][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-12-07 16:03:08.173][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.176][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-12-07 16:03:08.177][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-12-07 16:03:08.179][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-12-07 16:03:08.180][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.183][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-12-07 16:03:08.184][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-12-07 16:03:08.186][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.189][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-12-07 16:03:08.190][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-12-07 16:03:08.192][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-12-07 16:03:08.193][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.196][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-12-07 16:03:08.197][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-12-07 16:03:08.199][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-12-07 16:03:08.200][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-12-07 16:03:08.201][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-12-07 16:03:08.202][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-12-07 16:03:08.203][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.207][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-12-07 16:03:08.208][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-12-07 16:03:08.209][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.213][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-12-07 16:03:08.214][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-12-07 16:03:08.215][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.219][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-12-07 16:03:08.220][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-12-07 16:03:08.221][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.224][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-12-07 16:03:08.226][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-12-07 16:03:08.227][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.230][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-12-07 16:03:08.232][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-12-07 16:03:08.233][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.236][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-12-07 16:03:08.237][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-12-07 16:03:08.247][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-12-07 16:03:08.249][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.252][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-12-07 16:03:08.253][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-12-07 16:03:08.255][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-12-07 16:03:08.256][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.259][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-12-07 16:03:08.262][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-07 16:03:08.263][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-12-07 16:03:08.264][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:08.265][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:03:08.267][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:08.268][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:03:08.269][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-07 16:03:08.270][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-07 16:03:08.272][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-12-07 16:03:08.273][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:03:08.274][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:08.275][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-12-07 16:03:08.277][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:03:08.278][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:03:08.279][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:08.280][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-07 16:03:08.280][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-07 16:03:08.280][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-07 16:03:08.280][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-12-07 16:03:08.280][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-12-07 16:03:08.282][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-07 16:03:08.283][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:03:08.284][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:03:08.285][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:03:08.286][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:03:08.287][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:03:08.289][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:03:08.290][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:03:08.291][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:03:08.292][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:03:08.293][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-07 16:03:08.295][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:03:08.296][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-12-07 16:03:08.298][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-07 16:03:08.300][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-12-07 16:03:08.301][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:08.302][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:03:08.303][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:08.304][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:03:08.306][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-07 16:03:08.307][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-07 16:03:08.308][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-12-07 16:03:08.309][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:03:08.311][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:08.312][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-12-07 16:03:08.313][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:03:08.314][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:03:08.316][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:08.317][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-07 16:03:08.317][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-07 16:03:08.317][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-07 16:03:08.317][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-12-07 16:03:08.317][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-12-07 16:03:08.318][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-07 16:03:08.319][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:03:08.321][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:03:08.322][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:03:08.323][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:03:08.324][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:03:08.325][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:03:08.326][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:03:08.328][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:03:08.329][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:03:08.330][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-07 16:03:08.331][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:03:08.333][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-12-07 16:03:08.335][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:08.336][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-12-07 16:03:08.337][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:08.338][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:03:08.340][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:08.341][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:03:08.342][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-07 16:03:08.343][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-07 16:03:08.345][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-12-07 16:03:08.346][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:03:08.347][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-12-07 16:03:08.348][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-12-07 16:03:08.350][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:03:08.351][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:03:08.352][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:08.353][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:03:08.354][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-07 16:03:08.356][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:03:08.357][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:03:08.358][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:03:08.359][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:03:08.360][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:03:08.361][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:03:08.363][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:03:08.364][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:03:08.365][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:03:08.366][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-07 16:03:08.367][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:03:08.369][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-12-07 16:03:08.371][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:08.372][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-12-07 16:03:08.373][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:08.375][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:03:08.376][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:08.377][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:03:08.378][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-07 16:03:08.380][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-07 16:03:08.381][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-12-07 16:03:08.382][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:03:08.383][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-12-07 16:03:08.385][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-12-07 16:03:08.386][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:03:08.387][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:03:08.388][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:08.390][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:03:08.391][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-07 16:03:08.392][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:03:08.393][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:03:08.394][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:03:08.395][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:03:08.397][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:03:08.398][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:03:08.399][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:03:08.400][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:03:08.401][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:03:08.402][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-07 16:03:08.404][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:03:08.405][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-07 16:03:08.406][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.409][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:08.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:08.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.414][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:08.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:08.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.420][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:08.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:08.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.425][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:08.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:08.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.431][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:08.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:08.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.436][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.437][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:08.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:08.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.442][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:08.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:08.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.447][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:08.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:08.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.453][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:08.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:08.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.458][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:08.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:08.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.464][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:08.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:08.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.477][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:08.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:08.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.483][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:08.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:08.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.488][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:08.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:08.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.494][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:08.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:08.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.499][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:08.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:08.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.505][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:08.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:08.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.511][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-12-07 16:03:08.512][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-12-07 16:03:08.514][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-12-07 16:03:08.516][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-12-07 16:03:08.517][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-12-07 16:03:08.519][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-12-07 16:03:08.521][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-12-07 16:03:08.523][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-12-07 16:03:08.524][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-12-07 16:03:08.526][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-12-07 16:03:08.528][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-12-07 16:03:08.530][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-12-07 16:03:08.532][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-12-07 16:03:08.533][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-12-07 16:03:08.535][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-12-07 16:03:08.537][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-12-07 16:03:08.538][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-12-07 16:03:08.540][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-12-07 16:03:08.542][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-12-07 16:03:08.544][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-12-07 16:03:08.545][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-12-07 16:03:08.547][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-12-07 16:03:08.549][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-12-07 16:03:08.551][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-12-07 16:03:08.552][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-12-07 16:03:08.554][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-12-07 16:03:08.556][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-12-07 16:03:08.557][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-12-07 16:03:08.559][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-12-07 16:03:08.561][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-12-07 16:03:08.563][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-12-07 16:03:08.565][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-12-07 16:03:08.566][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-12-07 16:03:08.568][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-12-07 16:03:08.570][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-12-07 16:03:08.572][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-12-07 16:03:08.573][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-12-07 16:03:08.575][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-12-07 16:03:08.577][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-12-07 16:03:08.578][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-12-07 16:03:08.580][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-12-07 16:03:08.582][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-12-07 16:03:08.584][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-12-07 16:03:08.585][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-12-07 16:03:08.587][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-12-07 16:03:08.589][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-12-07 16:03:08.590][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-12-07 16:03:08.592][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-12-07 16:03:08.594][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-12-07 16:03:08.596][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-12-07 16:03:08.597][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-12-07 16:03:08.599][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-12-07 16:03:08.601][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-12-07 16:03:08.603][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-12-07 16:03:08.604][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-12-07 16:03:08.606][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-12-07 16:03:08.608][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-12-07 16:03:08.610][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-12-07 16:03:08.612][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-12-07 16:03:08.613][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-12-07 16:03:08.615][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-12-07 16:03:08.617][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-12-07 16:03:08.619][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-12-07 16:03:08.620][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-12-07 16:03:08.622][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-12-07 16:03:08.624][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-12-07 16:03:08.625][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-12-07 16:03:08.627][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-12-07 16:03:08.629][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-12-07 16:03:08.631][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-12-07 16:03:08.632][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-12-07 16:03:08.634][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-12-07 16:03:08.636][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-12-07 16:03:08.638][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-12-07 16:03:08.639][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-12-07 16:03:08.641][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-12-07 16:03:08.643][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-12-07 16:03:08.644][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-12-07 16:03:08.646][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-12-07 16:03:08.648][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-12-07 16:03:08.650][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-12-07 16:03:08.651][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-12-07 16:03:08.653][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-12-07 16:03:08.655][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-12-07 16:03:08.657][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2024-12-07 16:03:08.658][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-07 16:03:08.659][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:08.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:08.661][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.664][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:08.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:08.667][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:08.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:08.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.671][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:08.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:08.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:08.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:08.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.679][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:08.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:08.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:08.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:08.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.687][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:08.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:08.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:08.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:08.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.695][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:08.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:08.698][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:08.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:08.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.702][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:08.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:08.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:08.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:08.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.710][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:08.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:08.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:08.714][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:08.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.718][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:08.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:08.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:08.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:08.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.726][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:08.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:08.729][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:08.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:08.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.733][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:08.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:08.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:08.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:08.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.741][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:08.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:08.744][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:08.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:08.746][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.749][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:08.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:08.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:08.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:08.754][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.756][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:08.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:08.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:08.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:08.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.764][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:08.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:08.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:08.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:08.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.772][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:08.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:08.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:08.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:08.777][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.780][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.781][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:08.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:08.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:08.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:08.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.787][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:08.788][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:08.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:08.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:08.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:08.793][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:08.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:08.797][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-12-07 16:03:08.799][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-12-07 16:03:08.802][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:08.803][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-12-07 16:03:08.804][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:08.806][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:03:08.807][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:08.808][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:03:08.809][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:08.810][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-07 16:03:08.812][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-12-07 16:03:08.813][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:03:08.814][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:08.815][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-12-07 16:03:08.817][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:03:08.818][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-12-07 16:03:08.818][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-12-07 16:03:08.819][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-07 16:03:08.820][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:03:08.822][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-12-07 16:03:08.823][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:03:08.824][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:03:08.825][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:03:08.826][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:03:08.827][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:03:08.829][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:03:08.830][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-12-07 16:03:08.830][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-12-07 16:03:08.831][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:03:08.832][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:03:08.833][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:08.835][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:03:08.836][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-12-07 16:03:08.838][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:08.840][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-12-07 16:03:08.841][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:08.842][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:03:08.843][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:08.845][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:03:08.846][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:08.847][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-07 16:03:08.848][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-12-07 16:03:08.850][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:03:08.851][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:08.852][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-12-07 16:03:08.853][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:03:08.855][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-12-07 16:03:08.855][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-12-07 16:03:08.855][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-12-07 16:03:08.855][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-12-07 16:03:08.855][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-12-07 16:03:08.855][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-12-07 16:03:08.856][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-07 16:03:08.857][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-07 16:03:08.858][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-12-07 16:03:08.860][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:03:08.861][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:03:08.862][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:03:08.863][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:03:08.864][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:03:08.865][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:03:08.867][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-07 16:03:08.867][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-12-07 16:03:08.868][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:03:08.869][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:03:08.870][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:08.871][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:03:08.873][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-12-07 16:03:08.875][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-07 16:03:08.877][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-12-07 16:03:08.878][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:08.879][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:03:08.880][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:08.882][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:03:08.883][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:08.884][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-07 16:03:08.885][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-12-07 16:03:08.887][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:03:08.888][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:08.889][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-12-07 16:03:08.890][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:03:08.892][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-12-07 16:03:08.892][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:03:08.892][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:03:08.892][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:03:08.892][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:03:08.892][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:03:08.892][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:03:08.892][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:03:08.892][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:03:08.892][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:03:08.892][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-12-07 16:03:08.892][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:03:08.892][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:03:08.892][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:03:08.893][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-07 16:03:08.895][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-07 16:03:08.895][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-07 16:03:08.895][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-07 16:03:08.896][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-12-07 16:03:08.897][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:03:08.898][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:03:08.900][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:03:08.906][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:03:08.907][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:03:08.908][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:03:08.910][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-07 16:03:08.910][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-12-07 16:03:08.910][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-12-07 16:03:08.911][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:03:08.912][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:03:08.913][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:08.914][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-12-07 16:03:08.916][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-12-07 16:03:08.918][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:08.920][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-12-07 16:03:08.921][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:08.922][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:03:08.923][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:08.924][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:03:08.926][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:08.927][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-07 16:03:08.928][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-12-07 16:03:08.929][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:03:08.931][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:08.932][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-12-07 16:03:08.933][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:03:08.934][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-12-07 16:03:08.934][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-12-07 16:03:08.935][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-07 16:03:08.937][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:03:08.938][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-12-07 16:03:08.939][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:03:08.940][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:03:08.941][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:03:08.942][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:03:08.943][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:03:08.945][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:03:08.946][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-07 16:03:08.946][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-12-07 16:03:08.946][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-12-07 16:03:08.947][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:03:08.948][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:03:08.949][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:08.951][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-12-07 16:03:08.952][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-12-07 16:03:08.954][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-12-07 16:03:08.956][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-12-07 16:03:08.958][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-12-07 16:03:08.960][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-12-07 16:03:08.961][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-12-07 16:03:08.970][super$initialize] Initialize connector ncbi.pubchem.comp.
biodb.DEBUG[2024-12-07 16:03:08.972][super$initialize] Register connector ncbi.pubchem.comp with the request scheduler
biodb.DEBUG[2024-12-07 16:03:08.973][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.comp.
biodb.DEBUG[2024-12-07 16:03:08.975][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2024-12-07 16:03:08.976][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-12-07 16:03:08.977][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-12-07 16:03:08.979][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2024-12-07 16:03:08.981][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-12-07 16:03:08.982][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-12-07 16:03:08.983][rule$addConnector] Connector "ncbi.pubchem.comp" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-12-07 16:03:08.989][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.comp for database class ncbi.pubchem.comp .
biodb.INFO [2024-12-07 16:03:08.995][biodb::testThat]
biodb.INFO [2024-12-07 16:03:08.996][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-12-07 16:03:08.997][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:03:08.998][biodb::testThat]
biodb.TRACE[2024-12-07 16:03:09.002][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-2-content.xml".
biodb.DEBUG[2024-12-07 16:03:09.003][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:03:09.007][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-12-07 16:03:09.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:09.011][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:09.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:09.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:09.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:09.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:09.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:09.027][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:09.029][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:09.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.031][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:09.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:09.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.038][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:09.039][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:09.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.042][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.043][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:09.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:09.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.049][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:09.050][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:09.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.052][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:09.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:09.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.059][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:09.061][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:09.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.063][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.065][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:09.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:09.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.070][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:09.071][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:09.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.073][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.075][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:09.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:09.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.080][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:09.081][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:09.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.084][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.085][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:09.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:09.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.090][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:09.092][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:09.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.094][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.096][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:09.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:09.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.101][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:09.102][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:09.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.105][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.106][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:09.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:09.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.111][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:09.113][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:09.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.115][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.117][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:09.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:09.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.122][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:09.123][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:09.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.125][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:09.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:09.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.132][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:09.133][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:09.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.136][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.137][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:09.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:09.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.142][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:09.143][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:09.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.146][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.147][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:09.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:09.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.152][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:09.154][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:09.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.156][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.158][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:09.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:09.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.163][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:09.164][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:09.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.166][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.168][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:09.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:09.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.173][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-07 16:03:09.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:09.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.178][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:09.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:09.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:09.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:09.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.188][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-07 16:03:09.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:09.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:09.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:09.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.198][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:09.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:09.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.203][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-07 16:03:09.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:09.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.208][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:09.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:09.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:09.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:09.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.217][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-07 16:03:09.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:09.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:09.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:09.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.227][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:09.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:09.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.232][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-07 16:03:09.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:09.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.237][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:09.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:09.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.242][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:09.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:09.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.247][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:09.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:09.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.252][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:09.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:09.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.257][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:09.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:09.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:09.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:09.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.267][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:09.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:09.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:09.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:09.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:09.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:09.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:09.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:09.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:09.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:09.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:09.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:09.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:09.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:09.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:09.301][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2.
biodb.TRACE[2024-12-07 16:03:09.304][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:03:09.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:03:09.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.309][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:03:09.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:03:09.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.314][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:03:09.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:03:09.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.319][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:03:09.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:03:09.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.324][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:03:09.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:03:09.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.329][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-07 16:03:09.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-07 16:03:09.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.334][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-07 16:03:09.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-07 16:03:09.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:09.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:09.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.397][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:09.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:09.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:09.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:09.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:09.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:09.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:09.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:09.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:09.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:09.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:09.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:09.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:09.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:09.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.438][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:09.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:09.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.442][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:09.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:09.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.447][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:09.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:09.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:09.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:09.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:09.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:09.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:09.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:09.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.474][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:09.475][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:09.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.477][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:09.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:09.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.493][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:09.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:09.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:09.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:09.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.503][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:09.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:09.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.507][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:09.509][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:09.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.511][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.512][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:09.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:09.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:09.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:09.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:09.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:09.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:09.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:09.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.542][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:09.543][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:09.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.545][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:09.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:09.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.561][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:09.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:09.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.566][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:09.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:09.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.571][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:09.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:09.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.576][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:09.577][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:09.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.579][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.580][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:09.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:09.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.595][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:09.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:09.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.600][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:09.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:09.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.605][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:09.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:09.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.610][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:09.611][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:09.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.614][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.615][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:09.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:09.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.629][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:09.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:09.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.635][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:09.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:09.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.639][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:09.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:09.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.644][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:09.646][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:09.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.648][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.649][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:09.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:09.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.664][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:09.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:09.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.669][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:09.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:09.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.674][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:09.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:09.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.679][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:09.680][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:09.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.683][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.684][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:09.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:09.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:09.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:09.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.704][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:09.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:09.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.708][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:09.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:09.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.713][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:09.715][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:09.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.717][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.718][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:09.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:09.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:09.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:09.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.738][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:09.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:09.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.742][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:09.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:09.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.747][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:09.749][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:09.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.751][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.752][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:09.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:09.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.766][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:09.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:09.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.771][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:09.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:09.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.776][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:09.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:09.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.781][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:09.782][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:09.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.785][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.786][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:09.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:09.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.800][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:09.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:09.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.805][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:09.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:09.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.810][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:09.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:09.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.815][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:09.816][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:09.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.818][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.820][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:09.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:09.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.840][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:09.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:09.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.845][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:09.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:09.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:09.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:09.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.854][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:09.856][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:09.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.858][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.859][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:09.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:09.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.873][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:09.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:09.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.878][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:09.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:09.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.883][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:09.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:09.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.888][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:09.889][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:09.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.892][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.893][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:09.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:09.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:09.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:09.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.912][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:09.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:09.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.917][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:09.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:09.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.922][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:09.923][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:09.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.925][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.926][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:09.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:09.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:09.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:09.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.946][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:09.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:09.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.951][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:09.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:09.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.956][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:09.957][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:09.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.959][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.960][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:09.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:09.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.975][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:09.976][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:09.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.979][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.985][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:09.987][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:09.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.989][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:09.995][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:09.996][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:09.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:09.999][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.005][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:10.006][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:10.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.008][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.015][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:10.016][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:10.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.018][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.024][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:10.026][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:10.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.028][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.034][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:10.035][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:10.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.038][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.044][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:10.045][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:10.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.048][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.054][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:10.055][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:10.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.057][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.064][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:10.065][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:10.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.067][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.074][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:10.075][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:10.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.077][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.084][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:10.085][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:10.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.087][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.094][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:10.095][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:10.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.097][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.103][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:10.105][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:10.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.107][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.113][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:10.114][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:10.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.117][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.123][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-65124-content.xml".
biodb.DEBUG[2024-12-07 16:03:10.125][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:03:10.126][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-12-07 16:03:10.128][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:10.129][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:10.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:10.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:10.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:10.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:10.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:10.143][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:10.144][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:10.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.146][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:10.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:10.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.153][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:10.154][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:10.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.156][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.158][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:10.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:10.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.163][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:10.164][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:10.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.166][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.168][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:10.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:10.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.173][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:10.174][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:10.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.176][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.178][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:10.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:10.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.183][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:10.184][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:10.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.186][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.188][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:10.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:10.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.193][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:10.194][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:10.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.197][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.198][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:10.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:10.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.203][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:10.204][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:10.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.207][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.208][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:10.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:10.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.213][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:10.214][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:10.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.217][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.218][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:10.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:10.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.223][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:10.224][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:10.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.227][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.228][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:10.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:10.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.233][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:10.234][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:10.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.237][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:10.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:10.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.243][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:10.244][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:10.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.247][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.248][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:10.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:10.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.253][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:10.254][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:10.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.257][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.259][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:10.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:10.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.269][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:10.271][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:10.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.273][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.274][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:10.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:10.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.279][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:10.281][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:10.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.283][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.284][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:10.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:10.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.289][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-07 16:03:10.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:10.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.294][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:10.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:10.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.299][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:10.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:10.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.304][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-07 16:03:10.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:10.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.309][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:10.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:10.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.313][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:10.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:10.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.318][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-07 16:03:10.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:10.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.323][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:10.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:10.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.328][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:10.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:10.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.333][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-07 16:03:10.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:10.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.338][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:10.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:10.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.343][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:10.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:10.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.348][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-07 16:03:10.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:10.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.353][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:10.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:10.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:10.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:10.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.362][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:10.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:10.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.367][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:10.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:10.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.372][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:10.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:10.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:10.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:10.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.382][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:10.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:10.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:10.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:10.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:10.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:10.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:10.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:10.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:10.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:10.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:10.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:10.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:10.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:10.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:10.416][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 65124.
biodb.TRACE[2024-12-07 16:03:10.418][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:03:10.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:03:10.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.423][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:03:10.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:03:10.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.428][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:03:10.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:03:10.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.433][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:03:10.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:03:10.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.438][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:03:10.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:03:10.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.443][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-07 16:03:10.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-07 16:03:10.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.448][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-07 16:03:10.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-07 16:03:10.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:10.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:10.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.465][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:10.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:10.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:10.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:10.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:10.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:10.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:10.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:10.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:10.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:10.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:10.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:10.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:10.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:10.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.507][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:10.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:10.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.512][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:10.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:10.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.517][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:10.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:10.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:10.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:10.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:10.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:10.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:10.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:10.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.544][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:10.545][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:10.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.548][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:10.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:10.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:10.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:10.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.568][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:10.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:10.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.573][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:10.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:10.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.578][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:10.580][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:10.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.582][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:10.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:10.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:10.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:10.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:10.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:10.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:10.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:10.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.613][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:10.615][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:10.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.617][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:10.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:10.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.633][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:10.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:10.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.638][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:10.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:10.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.643][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:10.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:10.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.648][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:10.650][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:10.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.652][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.653][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:10.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:10.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.668][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:10.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:10.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.673][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:10.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:10.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.678][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:10.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:10.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.683][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:10.684][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:10.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.687][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.688][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:10.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:10.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.709][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:10.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:10.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.714][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:10.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:10.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.719][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:10.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:10.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.724][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:10.726][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:10.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.728][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.729][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:10.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:10.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.744][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:10.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:10.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.750][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:10.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:10.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.755][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:10.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:10.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.760][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:10.761][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:10.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.763][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.765][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:10.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:10.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:10.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:10.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.785][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:10.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:10.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.790][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:10.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:10.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.795][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:10.796][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:10.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.798][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.799][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:10.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:10.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.814][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:10.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:10.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.819][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:10.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:10.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.824][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:10.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:10.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.829][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:10.831][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:10.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.833][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.834][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:10.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:10.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:10.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:10.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:10.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:10.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.859][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:10.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:10.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.864][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:10.866][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:10.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.868][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.869][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:10.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:10.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:10.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:10.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.889][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:10.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:10.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.894][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:10.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:10.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.899][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:10.900][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:10.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.903][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:10.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:10.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:10.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:10.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.924][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:10.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:10.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:10.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:10.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.934][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:10.935][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:10.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.938][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:10.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:10.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.954][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:10.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:10.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.959][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:10.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:10.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.964][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:10.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:10.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.969][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:10.970][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:10.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.972][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.973][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:10.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:10.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.988][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:10.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:10.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:10.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:10.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:10.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:10.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:10.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:11.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.003][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:11.004][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:11.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.007][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.008][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:11.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:11.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.023][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:11.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:11.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.028][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:11.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:11.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.033][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:11.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:11.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.038][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:11.039][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:11.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.041][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.043][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:11.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:11.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.058][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:11.059][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:11.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.062][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.068][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:11.070][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:11.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.072][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.079][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:11.080][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:11.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.083][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.089][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:11.090][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:11.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.093][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.099][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:11.100][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:11.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.103][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.109][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:11.111][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:11.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.113][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.120][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:11.121][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:11.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.123][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.130][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:11.131][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:11.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.134][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.140][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:11.142][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:11.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.144][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.157][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:11.158][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:11.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.161][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.167][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:11.168][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:11.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.171][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.177][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:11.178][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:11.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.181][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.187][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:11.188][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:11.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.191][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.197][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:11.199][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:11.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.201][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.208][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:11.209][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:11.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.211][ef$get] fields variable is a list.
biodb.INFO [2024-12-07 16:03:11.222][biodb::testThat]
biodb.INFO [2024-12-07 16:03:11.223][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-12-07 16:03:11.224][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:03:11.225][biodb::testThat]
biodb.DEBUG[2024-12-07 16:03:11.228][private$loadEntries] Creating entries from ids [2]: "2, 65124".
biodb.DEBUG[2024-12-07 16:03:11.230][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-12-07 16:03:11.233][cch$loadFileContent] Trying to load 2 files from cache: [2]: "2, 65124".
biodb.TRACE[2024-12-07 16:03:11.235][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2024-12-07 16:03:11.237][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/65124.xml".
biodb.DEBUG[2024-12-07 16:03:11.239][conn$getEntryContent] 2 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:11.240][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-12-07 16:03:11.242][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-12-07 16:03:11.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:11.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:11.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:11.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:11.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:11.254][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:11.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:11.259][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:11.260][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:11.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.262][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:11.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:11.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.269][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:11.271][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:11.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.273][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.275][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:11.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:11.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.280][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:11.281][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:11.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.284][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:11.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:11.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.290][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:11.292][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:11.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.294][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.296][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:11.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:11.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.301][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:11.302][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:11.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.305][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.306][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:11.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:11.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.312][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:11.313][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:11.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.315][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.317][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:11.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:11.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.322][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:11.324][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:11.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.326][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.328][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:11.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:11.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.333][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:11.334][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:11.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.337][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.338][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:11.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:11.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.344][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:11.345][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:11.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.347][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.349][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:11.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:11.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.354][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:11.356][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:11.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.358][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.360][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:11.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:11.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.365][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:11.366][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:11.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.368][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.370][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:11.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:11.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.375][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:11.376][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:11.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.379][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:11.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:11.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.385][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:11.387][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:11.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.389][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.391][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:11.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:11.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.396][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:11.397][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:11.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.400][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.401][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:11.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:11.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.406][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-07 16:03:11.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:11.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.411][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:11.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:11.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.416][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:11.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:11.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.421][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-07 16:03:11.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:11.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.426][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:11.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:11.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.431][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:11.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:11.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.436][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-07 16:03:11.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:11.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.441][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:11.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:11.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.446][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:11.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:11.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.452][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-07 16:03:11.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:11.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.457][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:11.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:11.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.462][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:11.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:11.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.467][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-07 16:03:11.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:11.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.472][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:11.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:11.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.477][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:11.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:11.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.482][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:11.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:11.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.487][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:11.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:11.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.492][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:11.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:11.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:11.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:11.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.502][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:11.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:11.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:11.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:11.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:11.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:11.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:11.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:11.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:11.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:11.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:11.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:11.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:11.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:11.532][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:11.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:11.537][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:11.538][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:11.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.540][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:11.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:11.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.547][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:11.548][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:11.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.551][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.552][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:11.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:11.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.557][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:11.559][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:11.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.561][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.563][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:11.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:11.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.568][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:11.569][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:11.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.571][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.573][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:11.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:11.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.578][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:11.579][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:11.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.581][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.583][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:11.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:11.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.588][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:11.589][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:11.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.592][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:11.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:11.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.599][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:11.605][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:11.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.608][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.609][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:11.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:11.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.614][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:11.615][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:11.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.618][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.619][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:11.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:11.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.624][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:11.626][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:11.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.628][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.630][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:11.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:11.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.635][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:11.636][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:11.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.638][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.640][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:11.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:11.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.645][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:11.646][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:11.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.649][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.650][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:11.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:11.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.655][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:11.656][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:11.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.659][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:11.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:11.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.666][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:11.667][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:11.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.669][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.671][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:11.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:11.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.676][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:11.677][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:11.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.680][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.681][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:11.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:11.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.686][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-07 16:03:11.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:11.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.691][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:11.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:11.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:11.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:11.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.701][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-07 16:03:11.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:11.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.706][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:11.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:11.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:11.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:11.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.716][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-07 16:03:11.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:11.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:11.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:11.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:11.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:11.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.731][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-07 16:03:11.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:11.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:11.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:11.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.741][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:11.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:11.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.746][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-07 16:03:11.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:11.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.751][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:11.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:11.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.756][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:11.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:11.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.761][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:11.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:11.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.766][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:11.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:11.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.771][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:11.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:11.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:11.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:11.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.781][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:11.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:11.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:11.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:11.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:11.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:11.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:11.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:11.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:11.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:11.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:11.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:11.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:11.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:11.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:11.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:11.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:11.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:11.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:11.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:11.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:11.831][self$createEntryFromContent] Accession numbers: 2, 65124.
biodb.TRACE[2024-12-07 16:03:11.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-12-07 16:03:11.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-12-07 16:03:11.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-12-07 16:03:11.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-12-07 16:03:11.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-12-07 16:03:11.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-12-07 16:03:11.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-12-07 16:03:11.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-12-07 16:03:11.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-12-07 16:03:11.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-12-07 16:03:11.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-12-07 16:03:11.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-12-07 16:03:11.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-07 16:03:11.876][biodb::testThat]
biodb.INFO [2024-12-07 16:03:11.877][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-12-07 16:03:11.879][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:03:11.880][biodb::testThat]
biodb.TRACE[2024-12-07 16:03:11.883][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:11.885][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:11.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.887][ef$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:11.888][function(conn, opt)] Testing searchForEntries() with entry "2" and field "name".
biodb.TRACE[2024-12-07 16:03:11.904][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:11.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:11.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.910][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:11.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:11.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.915][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:11.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:11.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:11.923][function(conn, opt)] With value "(2-acetyloxy-3-carboxypropyl)-trimethylazanium".
biodb.DEBUG[2024-12-07 16:03:11.930][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-12-07 16:03:11.935][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:11.937][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-12-07 16:03:11.938][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:11.940][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2024-12-07 16:03:11.942][function(conn, opt)] With found IDs [5]: "87229113, 25217148, 450343, 450342, 2".
biodb.TRACE[2024-12-07 16:03:11.958][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:11.959][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:11.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.962][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.963][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:11.964][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:11.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.966][ef$get] fields variable is a list.
biodb.INFO [2024-12-07 16:03:11.972][biodb::testThat]
biodb.INFO [2024-12-07 16:03:11.973][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-12-07 16:03:11.974][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:03:11.975][biodb::testThat]
biodb.TRACE[2024-12-07 16:03:11.989][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:11.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:11.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.994][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:11.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:11.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:11.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:11.999][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:12.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:12.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:12.046][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-12-07 16:03:12.051][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:12.052][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-12-07 16:03:12.054][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:12.055][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.INFO [2024-12-07 16:03:12.076][biodb::testThat]
biodb.INFO [2024-12-07 16:03:12.077][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-12-07 16:03:12.078][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:03:12.079][biodb::testThat]
biodb.TRACE[2024-12-07 16:03:12.092][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:03:12.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:03:12.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.098][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:03:12.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:03:12.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.103][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:03:12.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:03:12.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.108][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:03:12.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:03:12.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.114][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:03:12.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:03:12.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.119][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-07 16:03:12.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-07 16:03:12.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.124][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-07 16:03:12.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-07 16:03:12.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.130][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:03:12.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:03:12.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.135][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:03:12.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:03:12.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.140][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:03:12.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:03:12.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.145][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:03:12.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:03:12.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.151][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:03:12.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:03:12.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.156][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-07 16:03:12.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-07 16:03:12.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.161][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-07 16:03:12.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-07 16:03:12.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-07 16:03:12.173][biodb::testThat]
biodb.INFO [2024-12-07 16:03:12.175][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-12-07 16:03:12.176][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:03:12.177][biodb::testThat]
biodb.INFO [2024-12-07 16:03:12.188][biodb::testThat]
biodb.INFO [2024-12-07 16:03:12.189][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-12-07 16:03:12.190][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:03:12.191][biodb::testThat]
biodb.INFO [2024-12-07 16:03:12.203][biodb::testThat]
biodb.INFO [2024-12-07 16:03:12.204][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-12-07 16:03:12.205][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:03:12.206][biodb::testThat]
biodb.DEBUG[2024-12-07 16:03:12.211][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/compound/2".
biodb.DEBUG[2024-12-07 16:03:12.321][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/compound/2.
biodb.INFO [2024-12-07 16:03:12.472][biodb::testThat]
biodb.INFO [2024-12-07 16:03:12.473][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-12-07 16:03:12.475][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:03:12.476][biodb::testThat]
biodb.DEBUG[2024-12-07 16:03:12.562][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?cid=2&t=l.
biodb.TRACE[2024-12-07 16:03:12.624][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:12.625][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:12.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.628][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.629][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:12.630][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:12.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.633][ef$get] fields variable is a list.
biodb.INFO [2024-12-07 16:03:12.635][biodb::testThat]
biodb.INFO [2024-12-07 16:03:12.636][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2024-12-07 16:03:12.637][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:03:12.638][biodb::testThat]
biodb.TRACE[2024-12-07 16:03:12.652][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:12.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:12.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.658][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:12.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:12.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.663][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:12.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:12.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:12.785][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-12-07 16:03:12.790][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:12.792][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-12-07 16:03:12.793][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:12.795][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2024-12-07 16:03:12.901][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-12-07 16:03:12.906][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:12.907][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-12-07 16:03:12.909][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:12.911][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.TRACE[2024-12-07 16:03:12.928][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:03:12.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:03:12.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:12.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:12.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:12.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:12.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:12.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:12.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:12.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:12.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:12.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:12.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:12.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:12.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:12.974][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:12.978][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:12.979][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-12-07 16:03:12.981][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:12.984][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-12-07 16:03:13.002][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-12-07 16:03:13.006][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:13.007][cch$loadFileContent] Trying to load 1 files from cache: [1]: "43af01c58cfaf2fe3448c11004a21986".
biodb.TRACE[2024-12-07 16:03:13.009][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:13.012][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/43af01c58cfaf2fe3448c11004a21986.content".
biodb.DEBUG[2024-12-07 16:03:13.513][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-12-07 16:03:13.517][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:13.519][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5a651e56a091cb06291b388106735d55".
biodb.TRACE[2024-12-07 16:03:13.521][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:13.523][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/5a651e56a091cb06291b388106735d55.content".
biodb.DEBUG[2024-12-07 16:03:13.550][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.27[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-12-07 16:03:13.554][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:13.556][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d3d0da2755d093596dae584b7698bc73".
biodb.TRACE[2024-12-07 16:03:13.558][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:13.560][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/d3d0da2755d093596dae584b7698bc73.content".
biodb.TRACE[2024-12-07 16:03:13.581][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:13.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:13.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:13.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:13.587][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:13.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:13.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:13.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:13.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:13.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:13.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:13.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:13.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:13.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:13.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:13.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:13.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:13.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:13.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:13.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:13.614][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:13.618][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:13.620][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1384af38a786fc6768cd7f1e796d96ab".
biodb.TRACE[2024-12-07 16:03:13.621][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:13.623][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1384af38a786fc6768cd7f1e796d96ab.content".
biodb.DEBUG[2024-12-07 16:03:13.642][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-12-07 16:03:13.646][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:13.648][cch$loadFileContent] Trying to load 1 files from cache: [1]: "983d3a3af3901d23b5d919d379c6bd32".
biodb.TRACE[2024-12-07 16:03:13.649][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:13.652][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/983d3a3af3901d23b5d919d379c6bd32.content".
biodb.DEBUG[2024-12-07 16:03:13.675][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-12-07 16:03:13.695][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:13.697][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9a9be2efcff8c77fef3b8a87f25b444".
biodb.TRACE[2024-12-07 16:03:13.699][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:13.702][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/b9a9be2efcff8c77fef3b8a87f25b444.content".
biodb.DEBUG[2024-12-07 16:03:13.729][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358309[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-12-07 16:03:13.733][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:13.735][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6d4e46c6f0a021fc6e92911d60537192".
biodb.TRACE[2024-12-07 16:03:13.736][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:13.738][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6d4e46c6f0a021fc6e92911d60537192.content".
biodb.TRACE[2024-12-07 16:03:13.758][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:13.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:13.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:13.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-07 16:03:13.773][biodb::testThat]
biodb.INFO [2024-12-07 16:03:13.774][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2024-12-07 16:03:13.775][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:03:13.776][biodb::testThat]
biodb.TRACE[2024-12-07 16:03:13.780][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:03:13.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:03:13.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:13.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:13.785][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:03:13.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:03:13.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:13.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:13.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:13.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:13.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:13.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:13.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:13.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:13.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:13.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:13.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:13.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:13.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:13.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:13.805][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:13.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:13.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:13.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:13.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:13.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:13.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:13.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:13.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:13.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:13.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:13.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:13.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:13.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:13.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:13.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:13.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:13.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:13.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:13.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:13.833][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:13.834][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:13.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:13.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:13.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:13.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:13.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:13.852][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:13.856][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:13.858][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-12-07 16:03:13.860][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:13.861][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-12-07 16:03:13.863][private$loadEntries] Creating entries from ids [3]: "172417118, 172414340, 172414267".
biodb.DEBUG[2024-12-07 16:03:13.865][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-12-07 16:03:13.866][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172417118, 172414340, 172414267".
biodb.TRACE[2024-12-07 16:03:13.869][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2024-12-07 16:03:13.872][loadFileContents] Loaded 3 files from cache: [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172417118.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172414340.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172414267.xml".
biodb.DEBUG[2024-12-07 16:03:13.874][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:13.875][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-12-07 16:03:13.877][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-12-07 16:03:13.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:13.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:13.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:13.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:13.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:13.889][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:13.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:13.894][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:13.895][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:13.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:13.897][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:13.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:13.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:13.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:13.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:13.904][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:13.905][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:13.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:13.908][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:13.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:13.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:13.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:13.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:13.914][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:13.916][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:13.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:13.918][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:13.920][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:13.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:13.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:13.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:13.925][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:13.926][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:13.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:13.928][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:13.930][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:13.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:13.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:13.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:13.935][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:13.936][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:13.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:13.939][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:13.940][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:13.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:13.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:13.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:13.945][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:13.947][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:13.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:13.949][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:13.951][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:13.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:13.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:13.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:13.956][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:13.957][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:13.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:13.960][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:13.961][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:13.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:13.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:13.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:13.966][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:13.968][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:13.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:13.970][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:13.971][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:13.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:13.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:13.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:13.976][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:13.978][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:13.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:13.980][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:13.982][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:13.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:13.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:13.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:13.987][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:13.988][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:13.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:13.990][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:13.992][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:13.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:13.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:13.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:13.997][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:13.998][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:13.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.000][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.002][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:14.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:14.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.007][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:14.008][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:14.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.011][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:14.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:14.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.017][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:14.018][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:14.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.021][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.022][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:14.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:14.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.027][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:14.029][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:14.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.031][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.033][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:14.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:14.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.038][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-07 16:03:14.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:14.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.043][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:14.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:14.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.047][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:14.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:14.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.052][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-07 16:03:14.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:14.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:14.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:14.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:14.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:14.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.067][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-07 16:03:14.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:14.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:14.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:14.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.077][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:14.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:14.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.082][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-07 16:03:14.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:14.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:14.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:14.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.091][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:14.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:14.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.096][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-07 16:03:14.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:14.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:14.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:14.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.106][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:14.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:14.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.119][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:14.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:14.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.125][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.130][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:14.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:14.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.140][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:14.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:14.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:14.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:14.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:14.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:14.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:14.159][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:14.160][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:14.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:14.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:14.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:14.170][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:14.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:14.175][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:14.176][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:14.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.178][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:14.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:14.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.185][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:14.186][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:14.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.189][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.190][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:14.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:14.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.195][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:14.196][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:14.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.199][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:14.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:14.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.205][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:14.207][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:14.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.209][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:14.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:14.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.216][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:14.217][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:14.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.219][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.221][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:14.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:14.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.226][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:14.228][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:14.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.230][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.232][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:14.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:14.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.237][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:14.238][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:14.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.241][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.242][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:14.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:14.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.247][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:14.249][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:14.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.251][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.253][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:14.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:14.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.258][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:14.259][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:14.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.261][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.263][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:14.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:14.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.268][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:14.270][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:14.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.272][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.274][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:14.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:14.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.279][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:14.280][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:14.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.283][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.284][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:14.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:14.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.289][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:14.291][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:14.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.293][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:14.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:14.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.300][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:14.302][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:14.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.304][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.306][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:14.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:14.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.311][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:14.312][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:14.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.314][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.316][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:14.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:14.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.321][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-07 16:03:14.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:14.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.326][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:14.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:14.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.331][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:14.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:14.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.336][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-07 16:03:14.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:14.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.341][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:14.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:14.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.346][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:14.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:14.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.351][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-07 16:03:14.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:14.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.356][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:14.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:14.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.361][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:14.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:14.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.366][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-07 16:03:14.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:14.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.371][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:14.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:14.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.376][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:14.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:14.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.381][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-07 16:03:14.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:14.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.386][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:14.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:14.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.391][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:14.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:14.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.396][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:14.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:14.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.401][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.407][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:14.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:14.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.417][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:14.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:14.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:14.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:14.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:14.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:14.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:14.437][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:14.438][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:14.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:14.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:14.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:14.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:14.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:14.452][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:14.454][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:14.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.456][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:14.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:14.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.463][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:14.464][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:14.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.467][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.468][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:14.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:14.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.473][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:14.475][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:14.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.477][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:14.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:14.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.484][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:14.485][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:14.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.488][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:14.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:14.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.494][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:14.496][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:14.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.498][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.500][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:14.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:14.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.505][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:14.506][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:14.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.509][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.510][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:14.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:14.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.515][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:14.517][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:14.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.519][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.521][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:14.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:14.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.531][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:14.533][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:14.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.535][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.537][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:14.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:14.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.542][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:14.543][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:14.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.545][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.547][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:14.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:14.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.552][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:14.553][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:14.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.556][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.557][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:14.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:14.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.562][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:14.563][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:14.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.566][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.567][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:14.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:14.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.572][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:14.574][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:14.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.576][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:14.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:14.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.583][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:14.584][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:14.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.586][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.588][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:14.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:14.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.593][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:14.594][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:14.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.597][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.598][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:14.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:14.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.603][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-07 16:03:14.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:14.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.608][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:14.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:14.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.613][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:14.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:14.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.618][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-07 16:03:14.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:14.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:14.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:14.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.628][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:14.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:14.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.633][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-07 16:03:14.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:14.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:14.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:14.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.643][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:14.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:14.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.648][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-07 16:03:14.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:14.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.653][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:14.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:14.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:14.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:14.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.663][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-07 16:03:14.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:14.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.668][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:14.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:14.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.673][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:14.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:14.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.678][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:14.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:14.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.683][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.688][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:14.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:14.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.698][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:14.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:14.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:14.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:14.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:14.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:14.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:14.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:14.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:14.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:14.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:14.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:14.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:14.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:14.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:14.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:14.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:14.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:14.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:14.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:14.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:14.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:14.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:14.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:14.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:14.762][self$createEntryFromContent] Accession numbers: 172417118, 172414340, 172414267.
biodb.DEBUG[2024-12-07 16:03:14.764][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:14.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:14.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:14.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:14.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:14.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:14.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:14.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:14.779][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.784][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.789][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:14.790][private$selectFields]
biodb.TRACE[2024-12-07 16:03:14.791][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:14.792][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:14.793][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:14.795][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.796][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.798][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.800][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.801][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.803][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.804][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:14.806][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:14.807][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.808][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.811][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.812][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:14.813][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.818][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.823][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.840][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417118].
biodb.DEBUG[2024-12-07 16:03:14.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:14.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:14.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:14.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:14.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:14.853][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:14.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:14.855][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.860][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.865][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:14.867][private$selectFields]
biodb.TRACE[2024-12-07 16:03:14.868][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:14.869][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:14.870][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:14.871][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.873][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.875][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.876][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.878][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.880][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.881][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:14.882][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:14.884][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.885][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.887][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.888][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:14.890][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.895][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.900][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.905][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172414340].
biodb.DEBUG[2024-12-07 16:03:14.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:14.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:14.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:14.914][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:14.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:14.917][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:14.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:14.919][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.930][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.935][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:14.936][private$selectFields]
biodb.TRACE[2024-12-07 16:03:14.937][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:14.939][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:14.940][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:14.941][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.942][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.945][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.946][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.947][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.950][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.951][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:14.952][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:14.953][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.955][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.957][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.958][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:14.959][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.964][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.969][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:14.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:14.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:14.974][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172414267].
biodb.DEBUG[2024-12-07 16:03:14.976][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:14.977][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:14.980][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:14.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:14.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:14.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:14.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:14.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:14.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:15.001][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:15.005][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:15.006][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:15.008][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-12-07 16:03:15.087][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-12-07 16:03:15.088][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-12-07 16:03:15.090][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-12-07 16:03:15.092][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-12-07 16:03:15.186][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:15.189][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content"
biodb.TRACE[2024-12-07 16:03:15.194][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.request"
biodb.DEBUG[2024-12-07 16:03:15.196][private$loadEntries] Creating entries from ids [3]: "172419784, 172416823, 172416819".
biodb.DEBUG[2024-12-07 16:03:15.198][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-12-07 16:03:15.200][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172419784, 172416823, 172416819".
biodb.TRACE[2024-12-07 16:03:15.201][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-12-07 16:03:15.202][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:15.204][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:15.205][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-07 16:03:15.206][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:15.207][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-12-07 16:03:15.209][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-12-07 16:03:15.211][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172419784,172416823,172416819/XML".
biodb.DEBUG[2024-12-07 16:03:15.214][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:15.215][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:15.217][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172419784,172416823,172416819/XML".
biodb.TRACE[2024-12-07 16:03:15.339][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172419784,172416823,172416819/XML).
biodb.TRACE[2024-12-07 16:03:15.597][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172419784.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172416823.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172416819.xml"
biodb.DEBUG[2024-12-07 16:03:15.601][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:15.602][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-12-07 16:03:15.604][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-12-07 16:03:15.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:15.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:15.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:15.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:15.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:15.616][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:15.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:15.621][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:15.622][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:15.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.625][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:15.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:15.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.631][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:15.633][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:15.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.635][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.637][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:15.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:15.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.642][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:15.643][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:15.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.645][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.647][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:15.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:15.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.652][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:15.653][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:15.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.656][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.657][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:15.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:15.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.663][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:15.664][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:15.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.666][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.668][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:15.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:15.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.673][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:15.674][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:15.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.677][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.678][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:15.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:15.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.684][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:15.685][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:15.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.687][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.689][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:15.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:15.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.694][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:15.695][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:15.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.698][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.699][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:15.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:15.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.704][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:15.706][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:15.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.708][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.710][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:15.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:15.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.715][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:15.716][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:15.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.719][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.720][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:15.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:15.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.726][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:15.727][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:15.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.729][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.731][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:15.732][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:15.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.735][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:15.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:15.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.741][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:15.743][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:15.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.745][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.747][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:15.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:15.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.752][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:15.753][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:15.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.755][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.757][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:15.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:15.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.762][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-07 16:03:15.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:15.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.767][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:15.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:15.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.772][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:15.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:15.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.778][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-07 16:03:15.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:15.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:15.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:15.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.788][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:15.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:15.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.793][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-07 16:03:15.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:15.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:15.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:15.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.803][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:15.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:15.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.808][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-07 16:03:15.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:15.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:15.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:15.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.818][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:15.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:15.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.823][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-07 16:03:15.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:15.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:15.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:15.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.833][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:15.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:15.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.838][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:15.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:15.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.843][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:15.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:15.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.848][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:15.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:15.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:15.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:15.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.859][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:15.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:15.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:15.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:15.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:15.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:15.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:15.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:15.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:15.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:15.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:15.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:15.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:15.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:15.901][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:15.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:15.905][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:15.906][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:15.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.909][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:15.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:15.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.915][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:15.916][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:15.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.919][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.920][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:15.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:15.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.925][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:15.927][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:15.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.929][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.931][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:15.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:15.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.936][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:15.937][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:15.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.939][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.941][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:15.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:15.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.946][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:15.947][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:15.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.950][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.951][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:15.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:15.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.956][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:15.958][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:15.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.960][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.962][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:15.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:15.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.967][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:15.968][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:15.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.970][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.972][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:15.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:15.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.977][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:15.978][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:15.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.981][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.982][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:15.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:15.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.987][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:15.989][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:15.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.991][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.993][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:15.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:15.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:15.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:15.998][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:15.999][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:16.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.001][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.003][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:16.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:16.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.008][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:16.009][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:16.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.012][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.013][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:16.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:16.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.019][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:16.020][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:16.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.022][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.024][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:16.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:16.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.029][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:16.030][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:16.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.033][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.034][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:16.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:16.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.039][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:16.041][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:16.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.043][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.045][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:16.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:16.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.050][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-07 16:03:16.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:16.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.055][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:16.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:16.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.060][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:16.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:16.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.065][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-07 16:03:16.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:16.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:16.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:16.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.075][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:16.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:16.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.080][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-07 16:03:16.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:16.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.085][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:16.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:16.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.090][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:16.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:16.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.095][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-07 16:03:16.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:16.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.100][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:16.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:16.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.105][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:16.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:16.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.111][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-07 16:03:16.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:16.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.116][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:16.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:16.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.121][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:16.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:16.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.126][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:16.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:16.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.131][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.136][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:16.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:16.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.146][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:16.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:16.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:16.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:16.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:16.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:16.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:16.166][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:16.167][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:16.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:16.175][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:16.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:16.177][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:16.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:16.181][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:16.183][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:16.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.185][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:16.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:16.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.192][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:16.193][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:16.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.195][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.197][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:16.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:16.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.202][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:16.204][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:16.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.206][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.208][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:16.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:16.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.213][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:16.214][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:16.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.217][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.218][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:16.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:16.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.224][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:16.225][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:16.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.227][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.229][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:16.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:16.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.234][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:16.235][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:16.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.238][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.239][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:16.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:16.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.244][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:16.246][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:16.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.248][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.250][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:16.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:16.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.255][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:16.256][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:16.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.259][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.260][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:16.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:16.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.265][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:16.267][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:16.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.269][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.271][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:16.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:16.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.276][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:16.277][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:16.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.280][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.281][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:16.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:16.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.286][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:16.288][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:16.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.290][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.297][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:16.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:16.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.302][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:16.304][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:16.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.306][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.308][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:16.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:16.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.313][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:16.314][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:16.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.316][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.318][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:16.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:16.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.323][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:16.324][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:16.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.327][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.328][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:16.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:16.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.333][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-07 16:03:16.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:16.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.338][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:16.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:16.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.343][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:16.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:16.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.348][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-07 16:03:16.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:16.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.353][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:16.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:16.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.358][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:16.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:16.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.363][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-07 16:03:16.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:16.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.368][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:16.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:16.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.373][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:16.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:16.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.378][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-07 16:03:16.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:16.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:16.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:16.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.388][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:16.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:16.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.393][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-07 16:03:16.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:16.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.398][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:16.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:16.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:16.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:16.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.408][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:16.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:16.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.413][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.418][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:16.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:16.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.428][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:16.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:16.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:16.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:16.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:16.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:16.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:16.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:16.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:16.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:16.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:16.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:16.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:16.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:16.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:16.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:16.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:16.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:16.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:16.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:16.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:16.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:16.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:16.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:16.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:16.493][self$createEntryFromContent] Accession numbers: 172419784, 172416823, 172416819.
biodb.DEBUG[2024-12-07 16:03:16.527][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:16.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:16.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:16.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:16.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:16.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:16.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:16.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:16.574][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.579][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.583][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:16.585][private$selectFields]
biodb.TRACE[2024-12-07 16:03:16.586][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:16.587][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:16.588][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:16.589][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.591][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.593][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.594][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.595][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.598][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.599][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:16.600][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:16.601][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.603][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.605][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.606][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:16.607][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.612][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.617][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.623][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172419784].
biodb.DEBUG[2024-12-07 16:03:16.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:16.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:16.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:16.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:16.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:16.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:16.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:16.637][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.642][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.647][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:16.648][private$selectFields]
biodb.TRACE[2024-12-07 16:03:16.649][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:16.651][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:16.652][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:16.653][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.654][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.657][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.658][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.659][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.661][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.663][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:16.664][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:16.665][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.666][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.669][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.670][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:16.671][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.676][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.687][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.693][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416823].
biodb.DEBUG[2024-12-07 16:03:16.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:16.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:16.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:16.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:16.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:16.705][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:16.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:16.707][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.712][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.717][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:16.718][private$selectFields]
biodb.TRACE[2024-12-07 16:03:16.719][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:16.721][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:16.722][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:16.723][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.724][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.726][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.728][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.729][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.731][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.732][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:16.734][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:16.735][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.736][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.738][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.740][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:16.741][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.746][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.751][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:16.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.756][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416819].
biodb.DEBUG[2024-12-07 16:03:16.757][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:16.758][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-07 16:03:16.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:16.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:16.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:16.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:16.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:16.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:16.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:16.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:16.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:16.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:16.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:16.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:16.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.798][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:16.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:16.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.803][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:16.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:16.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:16.881][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:16.883][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:16.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:16.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:16.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:16.892][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:16.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:16.901][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:16.906][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:16.907][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-12-07 16:03:16.909][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:16.911][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-12-07 16:03:16.913][private$loadEntries] Creating entries from ids [3]: "172431267, 172417440, 172414169".
biodb.DEBUG[2024-12-07 16:03:16.914][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-12-07 16:03:16.916][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172431267, 172417440, 172414169".
biodb.TRACE[2024-12-07 16:03:16.917][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2024-12-07 16:03:16.921][loadFileContents] Loaded 3 files from cache: [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172431267.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172417440.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172414169.xml".
biodb.DEBUG[2024-12-07 16:03:16.922][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:16.924][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-12-07 16:03:16.925][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-12-07 16:03:16.927][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:16.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:16.929][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:16.935][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:16.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:16.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:16.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:16.942][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:16.943][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:16.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.946][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:16.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:16.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.952][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:16.953][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:16.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.956][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.957][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:16.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:16.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.962][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:16.964][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:16.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.966][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.968][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:16.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:16.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.973][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:16.974][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:16.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.976][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:16.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:16.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.983][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:16.984][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:16.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.987][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.988][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:16.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:16.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.993][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:16.995][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:16.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:16.997][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:16.999][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:17.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:17.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.004][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:17.005][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:17.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.007][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.009][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:17.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:17.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.014][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:17.015][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:17.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.018][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.020][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:17.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:17.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.025][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:17.026][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:17.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.028][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.030][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:17.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:17.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.035][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:17.036][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:17.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.039][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.040][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:17.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:17.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.045][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:17.047][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:17.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.049][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.051][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:17.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:17.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.056][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:17.057][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:17.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.060][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:17.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:17.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.066][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:17.068][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:17.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.070][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.077][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:17.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:17.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.083][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:17.085][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:17.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.087][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.088][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:17.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:17.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.093][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-07 16:03:17.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:17.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.098][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:17.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:17.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.103][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:17.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:17.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.108][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-07 16:03:17.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:17.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.113][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:17.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:17.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.118][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:17.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:17.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.123][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-07 16:03:17.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:17.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.128][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:17.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:17.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:17.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:17.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.138][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-07 16:03:17.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:17.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:17.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:17.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:17.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:17.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.153][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-07 16:03:17.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:17.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.158][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:17.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:17.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:17.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:17.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.167][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:17.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:17.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.172][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.177][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:17.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:17.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.187][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:17.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:17.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:17.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:17.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:17.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:17.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:17.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:17.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:17.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:17.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:17.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:17.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:17.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:17.223][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:17.225][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:17.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.227][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:17.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:17.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.234][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:17.235][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:17.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.237][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.239][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:17.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:17.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.244][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:17.246][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:17.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.248][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.250][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:17.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:17.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.255][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:17.256][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:17.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.258][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:17.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:17.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.265][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:17.266][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:17.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.269][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:17.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:17.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.275][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:17.277][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:17.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.279][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.281][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:17.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:17.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.286][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:17.287][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:17.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.289][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.291][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:17.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:17.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.296][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:17.298][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:17.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.300][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.301][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:17.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:17.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.306][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:17.308][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:17.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.310][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.312][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:17.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:17.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.317][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:17.318][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:17.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.320][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.322][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:17.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:17.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.327][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:17.328][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:17.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.331][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.332][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:17.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:17.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.337][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:17.338][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:17.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.341][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:17.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:17.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.347][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:17.349][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:17.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.351][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.353][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:17.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:17.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.358][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:17.359][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:17.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.361][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.363][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:17.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:17.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.368][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-07 16:03:17.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:17.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.373][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:17.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:17.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.378][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:17.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:17.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.383][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-07 16:03:17.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:17.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.388][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:17.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:17.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:17.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:17.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.398][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-07 16:03:17.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:17.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.404][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:17.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:17.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:17.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:17.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.414][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-07 16:03:17.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:17.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:17.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:17.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.424][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:17.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:17.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.429][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-07 16:03:17.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:17.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.434][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:17.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:17.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:17.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:17.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.444][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:17.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:17.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.450][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.455][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:17.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:17.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.465][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:17.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:17.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:17.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:17.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:17.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:17.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:17.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:17.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:17.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:17.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:17.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:17.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:17.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:17.507][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:17.508][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:17.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.511][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:17.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:17.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.517][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:17.519][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:17.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.521][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.523][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:17.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:17.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.528][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:17.529][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:17.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.531][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:17.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:17.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.538][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:17.540][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:17.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.542][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.544][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:17.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:17.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.549][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:17.550][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:17.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.553][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.554][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:17.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:17.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.559][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:17.561][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:17.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.563][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.565][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:17.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:17.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.570][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:17.571][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:17.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.574][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.575][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:17.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:17.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.580][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:17.582][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:17.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.584][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.586][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:17.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:17.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.591][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:17.593][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:17.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.595][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.597][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:17.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:17.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.602][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:17.603][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:17.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.606][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.607][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:17.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:17.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.613][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:17.614][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:17.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.616][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.618][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:17.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:17.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.623][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:17.625][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:17.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.627][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:17.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:17.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.634][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:17.635][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:17.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.638][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.639][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:17.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:17.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.645][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:17.646][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:17.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.648][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.650][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:17.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:17.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.655][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-07 16:03:17.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:17.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.660][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:17.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:17.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.666][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:17.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:17.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.671][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-07 16:03:17.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:17.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.676][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:17.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:17.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.681][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:17.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:17.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.686][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-07 16:03:17.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:17.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.691][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:17.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:17.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:17.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:17.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.702][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-07 16:03:17.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:17.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.707][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:17.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:17.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.712][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:17.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:17.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.717][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-07 16:03:17.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:17.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.722][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:17.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:17.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.727][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:17.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:17.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.732][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:17.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:17.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.737][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.743][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:17.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:17.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.753][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:17.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:17.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:17.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:17.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:17.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:17.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:17.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:17.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:17.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:17.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:17.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:17.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:17.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:17.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:17.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:17.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:17.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:17.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:17.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:17.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:17.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:17.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:17.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:17.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:17.819][self$createEntryFromContent] Accession numbers: 172431267, 172417440, 172414169.
biodb.DEBUG[2024-12-07 16:03:17.821][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:17.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:17.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:17.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:17.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:17.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:17.833][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:17.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:17.836][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.841][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.846][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:17.847][private$selectFields]
biodb.TRACE[2024-12-07 16:03:17.849][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:17.850][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:17.851][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:17.852][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.854][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.856][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.857][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.859][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.861][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.862][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:17.864][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:17.865][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.866][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.869][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.870][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:17.871][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.876][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.881][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.893][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172431267].
biodb.DEBUG[2024-12-07 16:03:17.894][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:17.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:17.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:17.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:17.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:17.905][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:17.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:17.908][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.913][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.918][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:17.919][private$selectFields]
biodb.TRACE[2024-12-07 16:03:17.920][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:17.921][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:17.922][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:17.923][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.925][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.927][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.928][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.930][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.932][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.933][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:17.934][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:17.936][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.937][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.939][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.940][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:17.942][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.947][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.952][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.957][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417440].
biodb.DEBUG[2024-12-07 16:03:17.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:17.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:17.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:17.967][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:17.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:17.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:17.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:17.972][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.977][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.982][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:17.983][private$selectFields]
biodb.TRACE[2024-12-07 16:03:17.984][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:17.985][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:17.987][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:17.988][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.989][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.992][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.993][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.994][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:17.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:17.996][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:17.998][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:17.999][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:18.000][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:18.001][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:18.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.004][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.005][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:18.006][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:18.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:18.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.011][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:18.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:18.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.016][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:18.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:18.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.022][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172414169].
biodb.DEBUG[2024-12-07 16:03:18.023][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:18.024][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:18.027][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:18.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:18.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:18.035][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:18.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:18.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:18.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:18.047][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:18.051][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:18.052][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:18.054][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-12-07 16:03:18.114][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-12-07 16:03:18.115][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-12-07 16:03:18.117][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-12-07 16:03:18.119][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-12-07 16:03:18.196][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:18.199][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content"
biodb.TRACE[2024-12-07 16:03:18.204][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.request"
biodb.DEBUG[2024-12-07 16:03:18.206][private$loadEntries] Creating entries from ids [3]: "172420161, 172416872, 172416854".
biodb.DEBUG[2024-12-07 16:03:18.208][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-12-07 16:03:18.209][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172420161, 172416872, 172416854".
biodb.TRACE[2024-12-07 16:03:18.211][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-12-07 16:03:18.212][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:18.214][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:18.215][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-07 16:03:18.216][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:18.217][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-12-07 16:03:18.241][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-12-07 16:03:18.244][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172420161,172416872,172416854/XML".
biodb.DEBUG[2024-12-07 16:03:18.247][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:18.248][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:18.249][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172420161,172416872,172416854/XML".
biodb.TRACE[2024-12-07 16:03:18.414][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172420161,172416872,172416854/XML).
biodb.TRACE[2024-12-07 16:03:18.580][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172420161.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172416872.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172416854.xml"
biodb.DEBUG[2024-12-07 16:03:18.585][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:18.587][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-12-07 16:03:18.588][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-12-07 16:03:18.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:18.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:18.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:18.599][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:18.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:18.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:18.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:18.606][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:18.607][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:18.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.609][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:18.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:18.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.616][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:18.617][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:18.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.620][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.621][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:18.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:18.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.627][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:18.628][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:18.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.630][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:18.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:18.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.637][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:18.638][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:18.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.641][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.642][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:18.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:18.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.647][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:18.649][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:18.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.651][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.653][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:18.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:18.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.658][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:18.659][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:18.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.661][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.663][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:18.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:18.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.668][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:18.669][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:18.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.672][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.673][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:18.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:18.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.678][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:18.680][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:18.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.682][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.684][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:18.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:18.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.689][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:18.690][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:18.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.692][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.694][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:18.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:18.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.699][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:18.700][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:18.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.703][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.704][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:18.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:18.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.709][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:18.711][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:18.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.713][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.715][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:18.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:18.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.720][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:18.721][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:18.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.723][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:18.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:18.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.730][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:18.731][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:18.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.734][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.735][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:18.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:18.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.741][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:18.742][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:18.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.744][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.746][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:18.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:18.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.762][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-07 16:03:18.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:18.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:18.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:18.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:18.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:18.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.778][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-07 16:03:18.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:18.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:18.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:18.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.788][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:18.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:18.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.793][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-07 16:03:18.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:18.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:18.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:18.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.803][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:18.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:18.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.808][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-07 16:03:18.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:18.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:18.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:18.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.818][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:18.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:18.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.823][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-07 16:03:18.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:18.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:18.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:18.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.833][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:18.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:18.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.838][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:18.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:18.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.843][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:18.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:18.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.848][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:18.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:18.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:18.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:18.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.858][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:18.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:18.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:18.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:18.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:18.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:18.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:18.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:18.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:18.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:18.879][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:18.880][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:18.886][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:18.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:18.889][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:18.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:18.893][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:18.895][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:18.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.897][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:18.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:18.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.904][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:18.905][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:18.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.907][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:18.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:18.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.914][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:18.915][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:18.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.918][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.920][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:18.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:18.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.925][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:18.926][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:18.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.928][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.930][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:18.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:18.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.935][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:18.936][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:18.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.939][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.940][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:18.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:18.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.946][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:18.947][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:18.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.949][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.951][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:18.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:18.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.956][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:18.957][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:18.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.960][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.961][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:18.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:18.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.967][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:18.968][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:18.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.970][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.972][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:18.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:18.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.977][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:18.979][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:18.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.981][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:18.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:18.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.988][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:18.989][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:18.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.991][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.993][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:18.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:18.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:18.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:18.998][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:18.999][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:19.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.002][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.003][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:19.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:19.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.008][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:19.010][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:19.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.012][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:19.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:19.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.019][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:19.020][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:19.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.022][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.024][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:19.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:19.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.029][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:19.030][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:19.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.033][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.034][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:19.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:19.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.039][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-07 16:03:19.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:19.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.044][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:19.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:19.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:19.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:19.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.054][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-07 16:03:19.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:19.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.059][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:19.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:19.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:19.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:19.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.069][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-07 16:03:19.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:19.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.074][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:19.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:19.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.079][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:19.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:19.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.084][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-07 16:03:19.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:19.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.089][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:19.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:19.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.094][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:19.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:19.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.099][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-07 16:03:19.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:19.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.104][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:19.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:19.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:19.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:19.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.114][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:19.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:19.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.119][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.125][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:19.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:19.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.135][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:19.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:19.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:19.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:19.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:19.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:19.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:19.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:19.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:19.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:19.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:19.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:19.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:19.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:19.176][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:19.178][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:19.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.180][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:19.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:19.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.186][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:19.188][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:19.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.190][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.192][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:19.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:19.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.197][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:19.198][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:19.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.200][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:19.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:19.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.207][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:19.208][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:19.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.211][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:19.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:19.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.217][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:19.219][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:19.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.221][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.223][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:19.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:19.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.228][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:19.229][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:19.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.231][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.233][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:19.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:19.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.238][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:19.239][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:19.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.241][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.243][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:19.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:19.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.248][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:19.249][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:19.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.252][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.253][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:19.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:19.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.258][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:19.259][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:19.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.262][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.263][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:19.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:19.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.268][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:19.270][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:19.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.272][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.274][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:19.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:19.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.278][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:19.280][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:19.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.282][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.284][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:19.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:19.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.289][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:19.290][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:19.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.292][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:19.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:19.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.299][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:19.300][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:19.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.303][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.304][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:19.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:19.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.309][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:19.311][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:19.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.313][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.315][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:19.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:19.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.320][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-07 16:03:19.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:19.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:19.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:19.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.329][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:19.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:19.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.334][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-07 16:03:19.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:19.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.339][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:19.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:19.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.344][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:19.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:19.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.349][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-07 16:03:19.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:19.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.354][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:19.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:19.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:19.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:19.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.364][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-07 16:03:19.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:19.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:19.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:19.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.374][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:19.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:19.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.379][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-07 16:03:19.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:19.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.384][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:19.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:19.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.389][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:19.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:19.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.394][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:19.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:19.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.399][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.404][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:19.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:19.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.414][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:19.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:19.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:19.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:19.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:19.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:19.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:19.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:19.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:19.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:19.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:19.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:19.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:19.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:19.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:19.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:19.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:19.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:19.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:19.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:19.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:19.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:19.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:19.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:19.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:19.478][self$createEntryFromContent] Accession numbers: 172420161, 172416872, 172416854.
biodb.DEBUG[2024-12-07 16:03:19.479][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:19.481][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:19.482][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:19.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:19.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:19.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:19.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:19.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:19.494][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.499][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.504][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:19.505][private$selectFields]
biodb.TRACE[2024-12-07 16:03:19.506][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:19.507][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:19.508][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:19.510][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.511][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.513][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.515][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.516][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.518][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.520][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:19.521][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:19.522][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.523][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.526][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.527][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:19.528][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.533][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.538][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.544][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172420161].
biodb.DEBUG[2024-12-07 16:03:19.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:19.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:19.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:19.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:19.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:19.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:19.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:19.564][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.569][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.573][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:19.575][private$selectFields]
biodb.TRACE[2024-12-07 16:03:19.576][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:19.577][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:19.578][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:19.579][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.580][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.583][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.584][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.585][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.588][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.589][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:19.590][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:19.591][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.592][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.595][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.596][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:19.597][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.602][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.607][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.612][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416872].
biodb.DEBUG[2024-12-07 16:03:19.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:19.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:19.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:19.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:19.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:19.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:19.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:19.626][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.631][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.636][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:19.637][private$selectFields]
biodb.TRACE[2024-12-07 16:03:19.638][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:19.639][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:19.640][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:19.642][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.643][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.645][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.646][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.648][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.650][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.651][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:19.652][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:19.654][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.655][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.657][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.658][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:19.660][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.664][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.669][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:19.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.675][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416854].
biodb.DEBUG[2024-12-07 16:03:19.676][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:19.677][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-07 16:03:19.687][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:19.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:19.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.693][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:19.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:19.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-07 16:03:19.702][biodb::testThat]
biodb.INFO [2024-12-07 16:03:19.703][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2024-12-07 16:03:19.704][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:03:19.705][biodb::testThat]
biodb.TRACE[2024-12-07 16:03:19.708][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:03:19.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:03:19.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.713][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:03:19.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:03:19.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:19.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:19.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:19.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:19.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.728][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:19.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:19.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:19.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:19.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.738][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:19.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:19.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:19.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:19.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:19.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:19.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:19.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:19.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:19.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:19.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:19.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:19.769][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:19.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:19.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:19.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:19.780][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364:204.2430636[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:19.784][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:19.786][cch$loadFileContent] Trying to load 1 files from cache: [1]: "aa9cb23a1eb4b2596e7c242b1c35f744".
biodb.TRACE[2024-12-07 16:03:19.787][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:19.789][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/aa9cb23a1eb4b2596e7c242b1c35f744.content".
biodb.DEBUG[2024-12-07 16:03:19.791][private$loadEntries] Creating entries from ids [3]: "172394297, 172346151, 172345958".
biodb.DEBUG[2024-12-07 16:03:19.792][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-12-07 16:03:19.794][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172394297, 172346151, 172345958".
biodb.TRACE[2024-12-07 16:03:19.797][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2024-12-07 16:03:19.800][loadFileContents] Loaded 3 files from cache: [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172394297.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172346151.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172345958.xml".
biodb.DEBUG[2024-12-07 16:03:19.801][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:19.803][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-12-07 16:03:19.804][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-12-07 16:03:19.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:19.807][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:19.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:19.814][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:19.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:19.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:19.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:19.821][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:19.822][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:19.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.825][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:19.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:19.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.831][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:19.833][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:19.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.835][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.836][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:19.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:19.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.842][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:19.843][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:19.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.845][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.847][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:19.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:19.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.852][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:19.853][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:19.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.855][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.857][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:19.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:19.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.862][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:19.863][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:19.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.866][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:19.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:19.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.872][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:19.873][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:19.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.876][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:19.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:19.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.882][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:19.884][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:19.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.886][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.888][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:19.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:19.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.893][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:19.894][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:19.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.896][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.898][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:19.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:19.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.903][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:19.904][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:19.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.906][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.908][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:19.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:19.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.913][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:19.914][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:19.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.917][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.918][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:19.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:19.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.923][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:19.925][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:19.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.927][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.929][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:19.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:19.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.934][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:19.935][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:19.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.937][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:19.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:19.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.944][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:19.945][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:19.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.948][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.949][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:19.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:19.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.954][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:19.956][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:19.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.964][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.966][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:19.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:19.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.971][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-07 16:03:19.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:19.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.976][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:19.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:19.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.980][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:19.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:19.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.985][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-07 16:03:19.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:19.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:19.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:19.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:19.995][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:19.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:19.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:19.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.000][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-07 16:03:20.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:20.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.005][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:20.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:20.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.010][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:20.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:20.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.015][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-07 16:03:20.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:20.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:20.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:20.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.025][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:20.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:20.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.030][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-07 16:03:20.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:20.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.035][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:20.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:20.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.041][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:20.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:20.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.045][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:20.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:20.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.050][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.055][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:20.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:20.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.065][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:20.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:20.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:20.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:20.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:20.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:20.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:20.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:20.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:20.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:20.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:20.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:20.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:20.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:20.099][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:20.100][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:20.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.103][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:20.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:20.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.109][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:20.110][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:20.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.113][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:20.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:20.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.119][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:20.120][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:20.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.123][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.124][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:20.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:20.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.129][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:20.131][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:20.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.133][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.134][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:20.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:20.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.139][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:20.141][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:20.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.143][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:20.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:20.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.149][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:20.151][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:20.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.153][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.155][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:20.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:20.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.159][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:20.161][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:20.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.163][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.165][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:20.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:20.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.170][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:20.171][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:20.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.173][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.175][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:20.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:20.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.180][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:20.181][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:20.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.183][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.185][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:20.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:20.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.190][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:20.191][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:20.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.193][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.195][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:20.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:20.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.200][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:20.201][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:20.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.203][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.205][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:20.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:20.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.210][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:20.211][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:20.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.213][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:20.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:20.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.220][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:20.221][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:20.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.223][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.225][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:20.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:20.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.230][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:20.231][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:20.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.234][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.235][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:20.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:20.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.240][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-07 16:03:20.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:20.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.245][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:20.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:20.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.250][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:20.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:20.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.255][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-07 16:03:20.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:20.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.259][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:20.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:20.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.264][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:20.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:20.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.269][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-07 16:03:20.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:20.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.274][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:20.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:20.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:20.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:20.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.283][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-07 16:03:20.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:20.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:20.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:20.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.293][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:20.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:20.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.298][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-07 16:03:20.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:20.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.303][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:20.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:20.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:20.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:20.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.313][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:20.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:20.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.318][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.322][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:20.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:20.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.332][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:20.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:20.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:20.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:20.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:20.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:20.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:20.358][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:20.359][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:20.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:20.366][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:20.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:20.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:20.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:20.373][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:20.374][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:20.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.377][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:20.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:20.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.383][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:20.384][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:20.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.386][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.388][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:20.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:20.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.393][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:20.394][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:20.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.396][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.398][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:20.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:20.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.403][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:20.404][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:20.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.406][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:20.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:20.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.413][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:20.414][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:20.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.417][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.418][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:20.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:20.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.423][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:20.424][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:20.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.427][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:20.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:20.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.433][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:20.434][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:20.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.437][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.438][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:20.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:20.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.443][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:20.444][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:20.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.447][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.448][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:20.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:20.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.453][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:20.454][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:20.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.457][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.458][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:20.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:20.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.463][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:20.464][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:20.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.467][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.468][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:20.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:20.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.473][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:20.474][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:20.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.477][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.478][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:20.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:20.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.483][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:20.485][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:20.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.487][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:20.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:20.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.493][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:20.495][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:20.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.497][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.499][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:20.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:20.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.503][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:20.505][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:20.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.507][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.509][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:20.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:20.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.514][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-07 16:03:20.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:20.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:20.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:20.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.523][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:20.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:20.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.528][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-07 16:03:20.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:20.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:20.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:20.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.538][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:20.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:20.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.543][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-07 16:03:20.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:20.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:20.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:20.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.552][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:20.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:20.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.557][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-07 16:03:20.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:20.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.562][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:20.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:20.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.567][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:20.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:20.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.572][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-07 16:03:20.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:20.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.577][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:20.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:20.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.582][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:20.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:20.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.587][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:20.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:20.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.592][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.596][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:20.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:20.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.606][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:20.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:20.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:20.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:20.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:20.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:20.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:20.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:20.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:20.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:20.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:20.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:20.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:20.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:20.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:20.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:20.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:20.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:20.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:20.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:20.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:20.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:20.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:20.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:20.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:20.670][self$createEntryFromContent] Accession numbers: 172394297, 172346151, 172345958.
biodb.DEBUG[2024-12-07 16:03:20.671][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:20.673][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:20.674][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:20.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:20.682][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:20.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:20.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:20.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:20.687][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.692][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.697][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:20.698][private$selectFields]
biodb.TRACE[2024-12-07 16:03:20.699][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:20.700][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:20.701][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:20.703][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.704][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.706][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.708][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.709][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.711][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.713][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:20.714][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:20.715][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.716][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.719][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.720][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:20.721][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.731][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.737][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172394297].
biodb.DEBUG[2024-12-07 16:03:20.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:20.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:20.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:20.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:20.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:20.754][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:20.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:20.757][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.762][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.766][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:20.767][private$selectFields]
biodb.TRACE[2024-12-07 16:03:20.769][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:20.770][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:20.771][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:20.772][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.773][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.776][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.777][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.778][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.780][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.782][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:20.783][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:20.784][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.785][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.788][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.789][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:20.790][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.795][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.800][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.805][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172346151].
biodb.DEBUG[2024-12-07 16:03:20.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:20.807][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:20.809][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:20.815][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:20.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:20.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:20.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:20.819][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.824][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.829][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:20.830][private$selectFields]
biodb.TRACE[2024-12-07 16:03:20.831][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:20.832][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:20.834][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:20.835][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.836][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.838][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.840][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.841][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.843][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.844][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:20.846][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:20.847][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.848][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.850][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.852][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:20.853][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.858][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.863][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:20.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:20.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:20.868][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172345958].
biodb.DEBUG[2024-12-07 16:03:20.869][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:20.871][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:20.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:20.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:20.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:20.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:20.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:20.884][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:20.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:20.893][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715:226.19339285[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:20.897][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:20.899][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:20.901][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-12-07 16:03:20.960][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-12-07 16:03:20.961][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-12-07 16:03:20.963][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-12-07 16:03:20.965][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-12-07 16:03:21.033][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:21.036][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.content"
biodb.TRACE[2024-12-07 16:03:21.041][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.request"
biodb.DEBUG[2024-12-07 16:03:21.043][private$loadEntries] Creating entries from ids [3]: "172415476, 172413321, 172413312".
biodb.DEBUG[2024-12-07 16:03:21.045][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-12-07 16:03:21.047][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172415476, 172413321, 172413312".
biodb.TRACE[2024-12-07 16:03:21.048][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-12-07 16:03:21.050][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:21.051][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:21.052][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-07 16:03:21.053][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:21.055][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-12-07 16:03:21.056][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-12-07 16:03:21.058][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172415476,172413321,172413312/XML".
biodb.DEBUG[2024-12-07 16:03:21.061][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:21.062][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:21.064][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172415476,172413321,172413312/XML".
biodb.TRACE[2024-12-07 16:03:21.209][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172415476,172413321,172413312/XML).
biodb.TRACE[2024-12-07 16:03:21.369][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172415476.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172413321.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172413312.xml"
biodb.DEBUG[2024-12-07 16:03:21.372][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:21.374][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-12-07 16:03:21.375][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-12-07 16:03:21.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:21.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:21.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:21.386][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:21.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:21.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:21.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:21.393][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:21.394][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:21.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.396][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:21.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:21.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.403][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:21.404][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:21.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.407][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:21.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:21.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.413][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:21.415][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:21.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.417][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:21.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:21.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.424][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:21.425][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:21.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.428][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.429][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:21.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:21.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.434][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:21.436][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:21.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.438][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:21.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:21.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.445][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:21.446][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:21.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.449][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:21.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:21.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.456][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:21.457][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:21.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.459][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.461][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:21.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:21.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.466][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:21.467][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:21.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.469][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.471][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:21.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:21.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.476][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:21.477][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:21.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.480][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.481][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:21.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:21.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.486][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:21.488][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:21.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.490][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.492][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:21.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:21.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.497][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:21.498][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:21.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.500][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.502][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:21.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:21.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.507][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:21.508][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:21.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.511][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:21.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:21.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.517][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:21.519][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:21.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.521][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.523][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:21.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:21.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.528][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:21.529][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:21.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.532][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.533][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:21.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:21.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.538][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-07 16:03:21.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:21.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:21.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:21.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:21.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:21.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.553][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-07 16:03:21.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:21.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.558][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:21.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:21.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.563][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:21.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:21.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.581][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-07 16:03:21.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:21.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.586][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:21.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:21.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:21.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:21.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.596][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-07 16:03:21.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:21.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.602][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:21.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:21.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:21.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:21.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.612][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-07 16:03:21.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:21.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:21.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:21.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.622][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:21.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:21.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.627][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:21.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:21.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.632][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:21.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:21.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.637][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:21.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:21.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:21.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:21.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.647][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:21.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:21.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:21.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:21.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:21.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:21.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:21.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:21.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:21.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:21.668][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:21.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:21.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:21.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:21.678][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:21.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:21.682][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:21.684][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:21.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.686][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:21.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:21.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.693][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:21.694][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:21.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.697][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.698][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:21.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:21.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.704][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:21.705][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:21.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.707][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.709][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:21.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:21.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.714][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:21.716][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:21.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.718][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.719][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:21.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:21.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.724][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:21.726][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:21.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.728][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:21.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:21.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.735][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:21.736][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:21.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.738][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.740][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:21.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:21.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.745][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:21.746][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:21.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.748][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.750][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:21.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:21.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.755][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:21.756][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:21.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.758][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.760][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:21.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:21.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.765][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:21.766][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:21.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.769][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.770][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:21.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:21.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.775][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:21.776][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:21.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.779][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:21.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:21.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.785][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:21.787][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:21.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.789][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.791][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:21.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:21.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.796][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:21.797][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:21.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.799][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:21.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:21.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.806][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:21.807][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:21.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.809][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.811][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:21.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:21.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.816][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:21.817][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:21.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.819][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.821][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:21.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:21.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.826][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-07 16:03:21.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:21.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:21.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:21.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.836][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:21.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:21.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.840][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-07 16:03:21.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:21.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.845][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:21.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:21.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.850][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:21.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:21.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.855][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-07 16:03:21.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:21.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.860][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:21.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:21.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.865][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:21.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:21.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.870][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-07 16:03:21.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:21.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.874][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:21.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:21.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.879][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:21.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:21.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.884][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-07 16:03:21.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:21.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.889][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:21.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:21.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.894][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:21.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:21.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.899][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:21.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:21.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.904][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:21.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:21.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.908][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:21.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:21.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:21.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:21.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.918][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:21.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:21.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:21.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:21.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:21.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:21.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:21.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:21.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:21.937][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:21.938][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:21.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:21.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:21.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:21.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:21.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:21.952][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:21.954][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:21.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.956][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:21.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:21.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.963][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:21.964][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:21.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.972][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.974][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:21.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:21.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.979][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:21.981][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:21.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.983][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.984][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:21.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:21.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.989][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:21.991][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:21.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.993][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.994][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:21.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:21.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:21.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:21.999][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:22.001][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:22.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.003][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.004][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:22.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:22.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.009][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:22.011][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:22.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.013][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:22.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:22.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.019][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:22.020][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:22.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.023][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.024][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:22.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:22.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.029][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:22.031][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:22.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.033][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.034][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:22.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:22.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.039][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:22.041][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:22.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.043][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.044][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:22.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:22.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.049][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:22.051][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:22.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.053][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.054][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:22.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:22.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.059][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:22.061][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:22.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.063][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.064][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:22.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:22.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.069][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:22.071][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:22.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.073][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:22.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:22.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.079][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:22.081][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:22.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.083][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.085][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:22.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:22.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.089][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:22.091][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:22.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.093][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.095][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:22.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:22.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.100][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-07 16:03:22.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:22.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.105][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:22.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:22.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:22.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:22.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.114][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-07 16:03:22.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:22.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.119][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:22.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:22.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.124][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:22.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:22.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.129][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-07 16:03:22.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:22.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.135][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:22.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:22.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:22.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:22.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.145][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-07 16:03:22.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:22.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.150][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:22.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:22.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.155][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:22.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:22.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.160][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-07 16:03:22.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:22.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:22.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:22.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.170][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:22.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:22.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.175][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:22.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:22.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.180][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.185][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:22.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:22.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.195][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:22.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:22.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:22.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:22.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:22.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:22.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:22.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:22.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:22.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:22.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:22.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:22.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:22.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:22.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:22.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:22.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:22.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:22.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:22.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:22.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:22.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:22.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:22.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:22.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:22.260][self$createEntryFromContent] Accession numbers: 172415476, 172413321, 172413312.
biodb.DEBUG[2024-12-07 16:03:22.261][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:22.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:22.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:22.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:22.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:22.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:22.274][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:22.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:22.276][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.281][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.286][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:22.287][private$selectFields]
biodb.TRACE[2024-12-07 16:03:22.288][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:22.290][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:22.291][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:22.292][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.293][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.296][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.297][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.298][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.301][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.302][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:22.303][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:22.304][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.306][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.308][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.309][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:22.311][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.315][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.320][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.326][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172415476].
biodb.DEBUG[2024-12-07 16:03:22.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:22.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:22.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:22.335][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:22.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:22.338][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:22.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:22.340][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.345][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.350][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:22.351][private$selectFields]
biodb.TRACE[2024-12-07 16:03:22.352][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:22.354][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:22.355][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:22.356][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.357][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.365][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.367][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.368][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.371][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.372][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:22.373][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:22.374][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.376][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.378][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.379][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:22.380][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.385][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.390][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.395][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172413321].
biodb.DEBUG[2024-12-07 16:03:22.397][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:22.398][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:22.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:22.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:22.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:22.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:22.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:22.410][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.415][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.420][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:22.421][private$selectFields]
biodb.TRACE[2024-12-07 16:03:22.422][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:22.423][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:22.425][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:22.426][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.427][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.430][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.431][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.432][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.435][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.436][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:22.437][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:22.438][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.439][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.442][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.443][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:22.444][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.449][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.454][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.459][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172413312].
biodb.DEBUG[2024-12-07 16:03:22.461][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:22.462][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-07 16:03:22.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:22.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:22.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:22.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:22.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:22.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:22.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:22.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:22.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:22.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:22.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:22.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:22.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.503][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:22.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:22.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.508][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:22.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:22.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:22.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:22.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:22.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:22.524][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:22.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:22.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:22.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:22.536][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254:204.126644913746[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:22.540][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:22.542][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3123cd8cb57ce8b130489fc490c416f0".
biodb.TRACE[2024-12-07 16:03:22.543][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:22.545][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/3123cd8cb57ce8b130489fc490c416f0.content".
biodb.DEBUG[2024-12-07 16:03:22.547][private$loadEntries] Creating entries from ids [2]: "172413865, 172413863".
biodb.DEBUG[2024-12-07 16:03:22.548][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-12-07 16:03:22.550][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172413865, 172413863".
biodb.TRACE[2024-12-07 16:03:22.552][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2024-12-07 16:03:22.554][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172413865.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172413863.xml".
biodb.DEBUG[2024-12-07 16:03:22.556][conn$getEntryContent] 2 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:22.557][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-12-07 16:03:22.559][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-12-07 16:03:22.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:22.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:22.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:22.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:22.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:22.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:22.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:22.575][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:22.577][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:22.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.579][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:22.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:22.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.586][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:22.587][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:22.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.589][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:22.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:22.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.596][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:22.597][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:22.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.600][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.601][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:22.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:22.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.607][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:22.608][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:22.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.610][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:22.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:22.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.617][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:22.618][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:22.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.621][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.622][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:22.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:22.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.627][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:22.629][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:22.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.631][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.633][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:22.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:22.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.638][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:22.639][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:22.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.641][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.643][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:22.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:22.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.648][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:22.650][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:22.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.652][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.654][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:22.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:22.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.659][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:22.660][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:22.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.662][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.664][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:22.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:22.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.669][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:22.670][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:22.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.673][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.674][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:22.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:22.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.680][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:22.681][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:22.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.683][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.685][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:22.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:22.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.690][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:22.692][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:22.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.694][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.696][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:22.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:22.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.701][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:22.702][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:22.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.705][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.707][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:22.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:22.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.712][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:22.713][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:22.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.716][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.717][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:22.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:22.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.723][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-07 16:03:22.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:22.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.728][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:22.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:22.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:22.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:22.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.738][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-07 16:03:22.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:22.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.743][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:22.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:22.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.749][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:22.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:22.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.754][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-07 16:03:22.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:22.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.759][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:22.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:22.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:22.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:22.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.776][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-07 16:03:22.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:22.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.781][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:22.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:22.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.785][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:22.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:22.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.790][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-07 16:03:22.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:22.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.795][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:22.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:22.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.800][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:22.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:22.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.805][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:22.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:22.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.815][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:22.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:22.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.825][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:22.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:22.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:22.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:22.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:22.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:22.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:22.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:22.845][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:22.846][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:22.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:22.853][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:22.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:22.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:22.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:22.860][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:22.861][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:22.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.863][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:22.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:22.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.870][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:22.871][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:22.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.874][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.875][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:22.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:22.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.880][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:22.882][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:22.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.884][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.886][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:22.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:22.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.891][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:22.892][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:22.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.895][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.896][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:22.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:22.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.902][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:22.903][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:22.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.905][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.907][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:22.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:22.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.912][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:22.914][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:22.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.916][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.918][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:22.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:22.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.923][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:22.924][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:22.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.926][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.928][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:22.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:22.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.933][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:22.935][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:22.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.937][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.939][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:22.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:22.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.944][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:22.945][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:22.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.947][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.949][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:22.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:22.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.954][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:22.955][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:22.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.958][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:22.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:22.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.964][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:22.966][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:22.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.968][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.970][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:22.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:22.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.975][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:22.976][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:22.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.978][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:22.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:22.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.985][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:22.986][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:22.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.989][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.990][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:22.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:22.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:22.995][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:22.997][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:22.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:22.999][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.001][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:23.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:23.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.006][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-07 16:03:23.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:23.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:23.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:23.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.016][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:23.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:23.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.021][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-07 16:03:23.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:23.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.026][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:23.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:23.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.031][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:23.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:23.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.036][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-07 16:03:23.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:23.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.042][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:23.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:23.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.047][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:23.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:23.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.052][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-07 16:03:23.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:23.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:23.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:23.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:23.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:23.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.067][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-07 16:03:23.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:23.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:23.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:23.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.077][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:23.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:23.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.082][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:23.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:23.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.087][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.092][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:23.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:23.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.102][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:23.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:23.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:23.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:23.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:23.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:23.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:23.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:23.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:23.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:23.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:23.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:23.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:23.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:23.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:23.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:23.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:23.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:23.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:23.152][self$createEntryFromContent] Accession numbers: 172413865, 172413863.
biodb.DEBUG[2024-12-07 16:03:23.153][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:23.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:23.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:23.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:23.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:23.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:23.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:23.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:23.229][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.235][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.268][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:23.270][private$selectFields]
biodb.TRACE[2024-12-07 16:03:23.271][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:23.272][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:23.273][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:23.274][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.276][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.278][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.279][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.281][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.283][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.284][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:23.298][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:23.300][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.301][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.303][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.305][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:23.306][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.311][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.316][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.321][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417440].
biodb.DEBUG[2024-12-07 16:03:23.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:23.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:23.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:23.331][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:23.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:23.333][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:23.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:23.336][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.340][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.345][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:23.346][private$selectFields]
biodb.TRACE[2024-12-07 16:03:23.347][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:23.349][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:23.350][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:23.351][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.352][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.355][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.356][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.357][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.359][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.361][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:23.362][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:23.363][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.364][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.367][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.368][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:23.369][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.374][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.379][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.384][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172413865].
biodb.DEBUG[2024-12-07 16:03:23.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:23.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:23.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:23.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:23.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:23.396][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:23.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:23.399][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.405][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.411][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:23.413][private$selectFields]
biodb.TRACE[2024-12-07 16:03:23.414][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:23.415][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:23.417][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:23.418][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.420][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.423][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.424][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.425][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.427][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.429][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:23.430][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:23.431][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.432][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.435][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.436][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:23.437][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.442][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.447][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.453][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172413863].
biodb.DEBUG[2024-12-07 16:03:23.454][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:23.456][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:23.458][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:23.459][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:23.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:23.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:23.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:23.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:23.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:23.478][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429:226.062362304571[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:23.482][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:23.483][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:23.485][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-12-07 16:03:23.543][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-12-07 16:03:23.544][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-12-07 16:03:23.546][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-12-07 16:03:23.548][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-12-07 16:03:23.619][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:23.622][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.content"
biodb.TRACE[2024-12-07 16:03:23.627][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.request"
biodb.DEBUG[2024-12-07 16:03:23.629][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:23.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:23.632][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:23.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:23.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:23.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:23.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:23.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:23.647][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.653][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.658][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:23.659][private$selectFields]
biodb.TRACE[2024-12-07 16:03:23.660][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:23.661][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:23.662][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:23.664][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.665][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.667][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.669][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.670][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.672][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.674][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:23.675][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:23.676][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.677][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.680][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.681][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:23.682][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.687][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.692][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.698][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172420161].
biodb.DEBUG[2024-12-07 16:03:23.699][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:23.700][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:23.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:23.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:23.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:23.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:23.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:23.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.718][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.723][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:23.724][private$selectFields]
biodb.TRACE[2024-12-07 16:03:23.726][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:23.727][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:23.729][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:23.730][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.732][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.735][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.736][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.738][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.740][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.742][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:23.743][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:23.745][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.747][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.749][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.751][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:23.752][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.765][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.771][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.776][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416872].
biodb.DEBUG[2024-12-07 16:03:23.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:23.778][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:23.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:23.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:23.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:23.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:23.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:23.791][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.795][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.800][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:23.802][private$selectFields]
biodb.TRACE[2024-12-07 16:03:23.803][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:23.804][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:23.805][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:23.806][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.808][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.810][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.811][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.813][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.815][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.816][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:23.818][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:23.819][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.820][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.822][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.824][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:23.825][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.830][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.835][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.840][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416854].
biodb.DEBUG[2024-12-07 16:03:23.841][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:23.843][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-07 16:03:23.853][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:23.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:23.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.858][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:23.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:23.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-07 16:03:23.868][biodb::testThat]
biodb.INFO [2024-12-07 16:03:23.869][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2024-12-07 16:03:23.870][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:03:23.871][biodb::testThat]
biodb.TRACE[2024-12-07 16:03:23.875][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:03:23.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:03:23.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.880][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:03:23.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:03:23.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.885][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:23.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:23.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:23.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:23.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:23.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:23.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:23.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:23.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:23.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:23.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.910][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:23.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:23.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.915][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:23.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:23.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:23.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:23.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:23.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:23.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:23.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:23.939][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:23.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:23.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:23.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:23.951][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:23.955][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:23.957][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-12-07 16:03:23.959][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:23.961][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-12-07 16:03:23.963][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:23.965][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:23.966][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:23.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:23.973][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:23.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:23.976][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:23.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:23.979][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.984][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:23.989][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:23.990][private$selectFields]
biodb.TRACE[2024-12-07 16:03:23.991][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:23.992][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:23.994][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:23.995][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.996][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:23.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:23.999][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.000][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.001][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.004][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.005][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.006][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.007][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.009][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.011][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.012][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:24.014][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.019][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.024][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.029][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417118].
biodb.DEBUG[2024-12-07 16:03:24.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:24.032][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:24.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:24.039][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:24.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:24.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:24.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:24.044][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.050][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.055][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.056][private$selectFields]
biodb.TRACE[2024-12-07 16:03:24.057][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:24.058][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:24.060][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.061][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.062][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.065][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.066][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.067][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.069][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.071][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.072][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.073][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.074][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.077][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.078][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:24.079][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.084][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.089][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.095][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172414340].
biodb.DEBUG[2024-12-07 16:03:24.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:24.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:24.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:24.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:24.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:24.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:24.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:24.110][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.115][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.120][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.121][private$selectFields]
biodb.TRACE[2024-12-07 16:03:24.122][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:24.123][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:24.124][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.126][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.127][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.129][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.131][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.132][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.134][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.135][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.137][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.138][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.139][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.142][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.143][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:24.144][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.149][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.154][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.160][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172414267].
biodb.DEBUG[2024-12-07 16:03:24.161][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:24.163][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:24.165][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:24.166][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:24.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:24.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:24.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:24.176][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:24.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:24.186][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:24.190][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:24.192][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-12-07 16:03:24.194][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:24.196][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-12-07 16:03:24.205][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:24.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:24.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:24.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:24.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:24.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:24.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:24.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:24.222][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.228][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.233][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.234][private$selectFields]
biodb.TRACE[2024-12-07 16:03:24.235][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:24.236][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:24.238][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.239][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.240][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.243][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.244][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.245][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.248][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.249][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.250][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.252][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.253][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.256][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.257][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:24.258][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.263][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.269][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.274][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172419784].
biodb.DEBUG[2024-12-07 16:03:24.276][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:24.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:24.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:24.284][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:24.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:24.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:24.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:24.289][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.295][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.300][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.301][private$selectFields]
biodb.TRACE[2024-12-07 16:03:24.302][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:24.303][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:24.304][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.306][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.307][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.309][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.311][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.312][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.314][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.316][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.317][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.318][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.320][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.322][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.323][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:24.325][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.330][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.336][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.341][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416823].
biodb.DEBUG[2024-12-07 16:03:24.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:24.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:24.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:24.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:24.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:24.353][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:24.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:24.356][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.361][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.367][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.368][private$selectFields]
biodb.TRACE[2024-12-07 16:03:24.369][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:24.370][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:24.371][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.373][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.374][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.377][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.378][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.379][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.382][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.383][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.384][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.385][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.387][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.389][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.391][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:24.392][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.397][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.402][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.408][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416819].
biodb.DEBUG[2024-12-07 16:03:24.409][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:24.410][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-07 16:03:24.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:24.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:24.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.441][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:24.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:24.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:24.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:24.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:24.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:24.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:24.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:24.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.461][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:24.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:24.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:24.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:24.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:24.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:24.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:24.481][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:24.482][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:24.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:24.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:24.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:24.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:24.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:24.501][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:24.505][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:24.507][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-12-07 16:03:24.509][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:24.510][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-12-07 16:03:24.512][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:24.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:24.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:24.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:24.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:24.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:24.525][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:24.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:24.528][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.533][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.538][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.539][private$selectFields]
biodb.TRACE[2024-12-07 16:03:24.541][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:24.542][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:24.543][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.545][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.546][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.549][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.550][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.551][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.554][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.555][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.556][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.558][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.559][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.562][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.563][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:24.564][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.570][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.575][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.580][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172431267].
biodb.DEBUG[2024-12-07 16:03:24.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:24.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:24.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:24.590][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:24.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:24.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:24.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:24.596][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.601][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.606][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.607][private$selectFields]
biodb.TRACE[2024-12-07 16:03:24.608][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:24.609][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:24.611][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.612][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.613][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.616][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.617][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.618][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.621][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.622][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.623][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.624][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.626][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.628][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.629][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:24.631][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.636][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.641][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.653][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417440].
biodb.DEBUG[2024-12-07 16:03:24.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:24.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:24.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:24.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:24.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:24.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:24.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:24.668][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.673][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.678][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.679][private$selectFields]
biodb.TRACE[2024-12-07 16:03:24.680][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:24.681][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:24.682][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.684][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.685][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.687][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.689][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.690][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.692][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.694][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.695][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.696][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.698][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.700][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.701][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:24.703][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.708][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.718][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172414169].
biodb.DEBUG[2024-12-07 16:03:24.719][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:24.721][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:24.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:24.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:24.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:24.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:24.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:24.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:24.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:24.743][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:24.747][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:24.749][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-12-07 16:03:24.751][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:24.752][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-12-07 16:03:24.754][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:24.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:24.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:24.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:24.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:24.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:24.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:24.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:24.770][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.775][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.780][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.781][private$selectFields]
biodb.TRACE[2024-12-07 16:03:24.782][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:24.783][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:24.784][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.786][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.787][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.789][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.791][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.792][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.794][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.796][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.797][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.798][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.800][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.802][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.803][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:24.804][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.815][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.820][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172420161].
biodb.DEBUG[2024-12-07 16:03:24.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:24.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:24.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:24.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:24.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:24.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:24.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:24.835][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.840][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.845][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.846][private$selectFields]
biodb.TRACE[2024-12-07 16:03:24.847][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:24.848][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:24.850][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.851][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.852][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.854][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.856][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.857][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.859][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.861][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.862][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.863][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.864][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.867][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.868][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:24.869][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.874][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.879][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.885][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416872].
biodb.DEBUG[2024-12-07 16:03:24.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:24.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:24.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:24.894][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:24.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:24.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:24.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:24.899][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.904][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.909][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.911][private$selectFields]
biodb.TRACE[2024-12-07 16:03:24.912][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:24.913][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:24.914][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.915][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.917][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.919][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.920][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.922][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.924][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.925][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.927][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:24.928][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.929][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.932][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.933][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:24.934][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.939][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.944][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:24.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.949][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416854].
biodb.DEBUG[2024-12-07 16:03:24.951][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:24.952][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-07 16:03:24.978][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:24.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:24.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.983][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:24.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:24.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.992][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:24.993][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:24.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:24.995][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:24.997][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:24.998][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:24.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.000][ef$get] fields variable is a list.
biodb.INFO [2024-12-07 16:03:25.002][biodb::testThat]
biodb.INFO [2024-12-07 16:03:25.004][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2024-12-07 16:03:25.005][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:03:25.006][biodb::testThat]
biodb.TRACE[2024-12-07 16:03:25.009][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:03:25.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:03:25.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.014][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:03:25.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:03:25.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:25.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:25.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.024][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:25.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:25.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:25.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:25.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.034][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:25.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:25.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:25.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:25.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:25.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:25.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:25.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:25.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.054][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:25.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:25.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:25.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:25.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:25.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:25.069][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:25.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:25.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:25.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:25.087][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:25.091][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:25.092][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:25.094][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-12-07 16:03:25.151][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-12-07 16:03:25.152][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-12-07 16:03:25.154][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-12-07 16:03:25.156][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-12-07 16:03:25.268][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:25.270][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content"
biodb.TRACE[2024-12-07 16:03:25.275][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.request"
biodb.DEBUG[2024-12-07 16:03:25.278][private$loadEntries] Creating entries from ids [2]: "172417154, 172416756".
biodb.DEBUG[2024-12-07 16:03:25.279][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-12-07 16:03:25.281][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172417154, 172416756".
biodb.TRACE[2024-12-07 16:03:25.283][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-12-07 16:03:25.284][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:25.286][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:25.287][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-07 16:03:25.288][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:25.289][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-12-07 16:03:25.291][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-12-07 16:03:25.293][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172417154,172416756/XML".
biodb.DEBUG[2024-12-07 16:03:25.296][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:25.297][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:25.299][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172417154,172416756/XML".
biodb.TRACE[2024-12-07 16:03:25.504][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172417154,172416756/XML).
biodb.TRACE[2024-12-07 16:03:25.679][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172417154.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172416756.xml"
biodb.DEBUG[2024-12-07 16:03:25.682][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:25.684][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-12-07 16:03:25.685][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-12-07 16:03:25.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:25.688][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:25.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:25.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:25.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:25.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:25.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:25.703][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:25.704][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:25.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.707][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:25.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:25.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.713][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:25.714][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:25.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.717][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.718][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:25.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:25.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.723][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:25.725][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:25.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.727][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.728][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:25.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:25.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.733][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:25.735][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:25.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.737][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:25.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:25.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.744][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:25.745][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:25.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.747][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.749][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:25.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:25.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.754][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:25.756][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:25.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.758][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:25.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:25.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.765][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:25.766][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.769][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.770][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:25.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:25.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.775][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:25.777][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:25.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.779][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.780][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:25.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:25.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.786][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:25.787][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:25.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.789][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.791][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:25.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:25.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.796][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:25.797][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:25.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.800][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.801][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:25.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:25.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.806][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:25.808][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:25.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.810][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.812][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:25.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:25.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.817][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:25.818][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:25.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.820][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:25.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:25.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.827][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:25.828][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:25.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.830][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.832][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:25.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:25.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.837][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:25.838][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:25.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.841][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.842][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:25.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:25.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.847][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-07 16:03:25.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:25.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:25.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:25.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.857][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:25.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:25.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.862][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-07 16:03:25.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:25.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:25.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:25.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:25.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:25.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.877][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-07 16:03:25.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:25.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:25.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:25.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.886][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:25.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:25.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.891][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-07 16:03:25.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:25.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.896][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:25.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:25.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.901][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:25.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:25.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.906][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-07 16:03:25.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:25.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.911][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:25.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:25.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.916][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:25.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:25.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.921][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:25.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:25.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.926][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:25.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:25.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.931][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:25.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:25.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:25.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:25.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.940][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:25.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:25.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:25.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:25.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:25.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:25.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:25.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:25.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:25.960][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:25.961][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:25.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:25.968][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:25.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:25.971][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:25.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:25.975][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:25.976][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:25.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.978][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:25.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:25.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.985][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:25.986][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:25.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.988][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:25.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:25.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:25.995][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:25.996][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:25.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:25.999][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.000][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:26.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:26.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.005][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:26.007][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:26.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.009][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.010][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:26.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:26.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.016][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:26.017][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:26.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.019][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.021][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:26.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:26.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.026][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:26.027][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:26.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.030][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.031][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:26.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:26.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.036][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:26.038][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:26.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.050][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.052][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:26.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:26.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.058][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:26.059][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:26.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.061][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.063][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:26.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:26.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.068][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:26.069][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:26.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.072][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:26.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:26.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.078][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:26.080][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:26.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.082][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.083][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:26.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:26.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.088][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:26.090][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:26.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.092][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.094][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:26.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:26.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.099][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:26.100][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:26.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.103][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:26.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:26.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.109][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:26.111][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:26.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.113][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.115][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:26.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:26.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.120][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:26.121][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:26.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.124][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.125][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:26.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:26.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.130][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-07 16:03:26.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:26.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.135][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:26.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:26.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:26.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:26.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.145][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-07 16:03:26.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:26.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.150][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:26.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:26.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.155][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:26.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:26.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.160][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-07 16:03:26.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:26.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:26.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:26.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.170][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:26.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:26.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.175][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-07 16:03:26.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:26.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:26.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:26.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.185][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:26.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:26.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.190][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-07 16:03:26.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:26.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.195][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:26.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:26.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:26.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:26.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.205][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:26.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:26.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.210][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.215][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:26.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:26.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.224][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:26.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:26.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:26.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:26.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:26.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:26.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:26.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:26.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:26.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:26.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:26.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:26.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:26.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:26.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:26.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:26.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:26.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:26.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:26.274][self$createEntryFromContent] Accession numbers: 172417154, 172416756.
biodb.DEBUG[2024-12-07 16:03:26.275][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:26.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:26.278][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:26.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:26.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:26.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:26.288][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:26.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:26.290][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.295][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.300][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:26.301][private$selectFields]
biodb.TRACE[2024-12-07 16:03:26.303][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:26.304][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:26.305][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:26.306][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.307][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.310][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.311][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.312][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.315][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.316][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:26.317][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:26.318][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.319][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.322][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.323][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:26.324][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.329][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.334][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.339][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417154].
biodb.DEBUG[2024-12-07 16:03:26.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:26.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:26.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:26.349][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:26.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:26.351][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:26.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:26.354][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.359][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.364][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:26.365][private$selectFields]
biodb.TRACE[2024-12-07 16:03:26.366][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:26.367][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:26.368][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:26.369][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.371][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.373][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.374][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.376][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.378][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.379][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:26.380][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:26.381][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.383][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.385][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.386][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:26.388][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.392][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.397][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.403][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417118].
biodb.DEBUG[2024-12-07 16:03:26.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:26.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:26.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:26.412][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:26.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:26.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:26.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:26.417][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.422][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.427][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:26.428][private$selectFields]
biodb.TRACE[2024-12-07 16:03:26.429][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:26.431][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:26.432][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:26.433][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.434][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.437][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.438][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.439][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.442][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.443][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:26.444][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:26.445][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.447][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.449][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.450][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:26.452][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.457][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.462][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.473][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416756].
biodb.DEBUG[2024-12-07 16:03:26.474][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:26.475][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:26.478][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:26.479][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:26.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:26.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:26.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:26.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:26.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:26.497][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:26.502][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:26.503][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:26.505][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-12-07 16:03:26.562][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-12-07 16:03:26.563][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-12-07 16:03:26.565][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-12-07 16:03:26.567][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-12-07 16:03:26.859][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:26.862][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content"
biodb.TRACE[2024-12-07 16:03:26.867][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.request"
biodb.DEBUG[2024-12-07 16:03:26.870][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:26.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:26.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:26.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:26.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:26.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:26.883][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:26.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:26.886][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.891][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.896][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:26.897][private$selectFields]
biodb.TRACE[2024-12-07 16:03:26.898][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:26.899][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:26.900][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:26.902][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.903][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.905][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.907][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.908][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.910][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.911][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:26.913][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:26.914][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.915][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.918][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.919][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:26.920][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.925][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.930][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.936][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172419784].
biodb.DEBUG[2024-12-07 16:03:26.937][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:26.938][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:26.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:26.945][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:26.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:26.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:26.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:26.951][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.956][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.961][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:26.962][private$selectFields]
biodb.TRACE[2024-12-07 16:03:26.963][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:26.964][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:26.965][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:26.967][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.968][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.970][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.972][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.973][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.975][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.976][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:26.978][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:26.979][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.980][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.983][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.984][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:26.985][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.990][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:26.995][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:26.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:26.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.000][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416823].
biodb.DEBUG[2024-12-07 16:03:27.002][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:27.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:27.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:27.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:27.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:27.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:27.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:27.015][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.020][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.025][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:27.026][private$selectFields]
biodb.TRACE[2024-12-07 16:03:27.027][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:27.028][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:27.030][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:27.031][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.032][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.034][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.036][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.037][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.039][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.041][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:27.042][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:27.043][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.044][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.047][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.048][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:27.049][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.054][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.059][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.065][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416819].
biodb.DEBUG[2024-12-07 16:03:27.066][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:27.067][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:27.093][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:27.094][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:27.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:27.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:27.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:27.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:27.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:27.113][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:27.118][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:27.119][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-12-07 16:03:27.121][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:27.122][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-12-07 16:03:27.125][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:27.127][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:27.128][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:27.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:27.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:27.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:27.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:27.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:27.140][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.145][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.150][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:27.151][private$selectFields]
biodb.TRACE[2024-12-07 16:03:27.152][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:27.153][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:27.155][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:27.156][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.157][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.160][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.161][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.162][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.165][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.166][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:27.167][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:27.168][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.170][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.172][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.173][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:27.175][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.180][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.186][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.191][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417118].
biodb.DEBUG[2024-12-07 16:03:27.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:27.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:27.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:27.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:27.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:27.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:27.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:27.206][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.211][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.216][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:27.217][private$selectFields]
biodb.TRACE[2024-12-07 16:03:27.218][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:27.219][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:27.220][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:27.222][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.223][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.226][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.227][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.228][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.231][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.232][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:27.233][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:27.234][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.236][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.238][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.239][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:27.241][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.254][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.259][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.265][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172414340].
biodb.DEBUG[2024-12-07 16:03:27.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:27.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:27.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:27.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:27.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:27.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:27.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:27.279][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.284][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.289][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:27.290][private$selectFields]
biodb.TRACE[2024-12-07 16:03:27.292][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:27.293][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:27.294][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:27.295][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.297][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.299][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.300][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.302][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.304][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.305][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:27.307][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:27.308][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.309][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.311][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.313][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:27.314][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.319][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.324][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.329][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172414267].
biodb.DEBUG[2024-12-07 16:03:27.330][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:27.332][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:27.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:27.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:27.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:27.342][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:27.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:27.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:27.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:27.354][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:27.358][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:27.360][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-12-07 16:03:27.361][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:27.363][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-12-07 16:03:27.365][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:27.367][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:27.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:27.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:27.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:27.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:27.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:27.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:27.381][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.386][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.391][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:27.392][private$selectFields]
biodb.TRACE[2024-12-07 16:03:27.393][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:27.394][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:27.395][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:27.397][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.398][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.400][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.402][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.403][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.405][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.407][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:27.408][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:27.409][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.410][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.413][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.414][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:27.415][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.420][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.425][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.430][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172419784].
biodb.DEBUG[2024-12-07 16:03:27.432][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:27.433][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:27.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:27.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:27.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:27.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:27.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:27.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.450][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.455][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:27.456][private$selectFields]
biodb.TRACE[2024-12-07 16:03:27.457][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:27.458][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:27.459][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:27.461][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.462][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.464][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.465][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.467][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.469][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.470][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:27.471][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:27.473][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.474][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.476][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.477][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:27.479][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.483][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.488][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.494][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416823].
biodb.DEBUG[2024-12-07 16:03:27.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:27.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:27.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:27.503][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:27.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:27.505][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:27.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:27.508][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.513][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.517][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:27.519][private$selectFields]
biodb.TRACE[2024-12-07 16:03:27.520][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:27.521][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:27.522][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:27.523][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.525][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.527][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.528][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.529][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.532][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.533][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:27.534][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:27.535][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.537][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.539][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.540][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:27.541][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.551][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:27.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:27.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:27.557][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416819].
biodb.DEBUG[2024-12-07 16:03:27.558][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:27.559][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:27.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:27.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:27.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:27.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:27.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:27.597][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:27.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:27.606][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:27.610][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:27.612][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:27.614][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-12-07 16:03:27.672][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-12-07 16:03:27.673][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-12-07 16:03:27.675][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-12-07 16:03:27.677][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-12-07 16:03:27.974][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:27.976][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content"
biodb.TRACE[2024-12-07 16:03:27.981][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.request"
biodb.DEBUG[2024-12-07 16:03:27.984][private$loadEntries] Creating entries from ids [2]: "172429452, 172429246".
biodb.DEBUG[2024-12-07 16:03:27.985][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-12-07 16:03:27.987][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172429452, 172429246".
biodb.TRACE[2024-12-07 16:03:27.989][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-12-07 16:03:27.990][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:27.991][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:27.993][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-07 16:03:27.994][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:27.995][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-12-07 16:03:27.996][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-12-07 16:03:27.999][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172429452,172429246/XML".
biodb.DEBUG[2024-12-07 16:03:28.002][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:28.003][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:28.004][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172429452,172429246/XML".
biodb.TRACE[2024-12-07 16:03:28.137][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172429452,172429246/XML).
biodb.TRACE[2024-12-07 16:03:28.304][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172429452.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172429246.xml"
biodb.DEBUG[2024-12-07 16:03:28.307][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:28.308][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-12-07 16:03:28.310][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-12-07 16:03:28.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:28.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:28.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:28.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:28.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:28.333][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:28.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:28.338][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:28.339][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:28.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.341][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:28.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:28.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.348][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:28.349][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:28.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.351][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.353][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:28.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:28.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.358][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:28.359][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:28.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.361][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.363][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:28.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:28.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.368][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:28.369][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:28.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.372][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.373][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:28.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:28.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.378][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:28.380][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:28.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.382][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.384][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:28.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:28.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.389][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:28.390][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:28.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.392][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.394][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:28.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:28.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.399][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:28.400][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:28.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.402][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.404][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:28.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:28.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.409][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:28.410][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:28.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.412][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.414][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:28.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:28.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.419][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:28.420][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:28.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.423][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.424][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:28.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:28.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.429][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:28.430][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:28.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.433][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.434][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:28.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:28.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.439][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:28.440][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:28.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.443][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.444][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:28.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:28.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.449][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:28.451][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:28.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.453][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:28.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:28.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.459][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:28.461][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:28.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.463][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.465][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:28.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:28.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.470][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:28.471][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:28.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.473][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.475][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:28.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:28.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.480][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-07 16:03:28.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:28.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.485][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:28.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:28.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.490][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:28.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:28.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.494][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-07 16:03:28.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:28.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.499][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:28.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:28.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.504][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:28.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:28.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.509][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-07 16:03:28.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:28.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:28.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:28.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:28.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:28.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.523][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-07 16:03:28.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:28.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:28.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:28.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:28.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:28.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.538][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-07 16:03:28.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:28.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:28.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:28.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:28.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:28.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.553][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:28.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:28.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.558][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:28.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:28.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.562][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:28.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:28.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:28.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:28.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.572][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:28.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:28.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:28.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:28.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:28.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:28.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:28.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:28.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:28.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:28.593][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:28.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:28.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:28.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:28.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:28.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:28.606][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:28.608][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:28.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.610][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:28.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:28.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.617][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:28.618][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:28.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.620][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.622][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:28.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:28.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.627][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:28.628][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:28.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.630][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:28.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:28.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.637][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:28.638][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:28.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.641][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.642][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:28.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:28.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.647][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:28.648][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:28.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.651][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.652][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:28.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:28.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.657][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:28.659][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:28.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.661][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.663][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:28.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:28.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.667][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:28.669][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:28.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.671][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.673][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:28.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:28.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.678][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:28.679][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:28.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.681][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.683][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:28.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:28.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.688][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:28.689][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:28.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.692][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.693][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:28.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:28.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.698][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:28.699][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:28.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.702][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.703][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:28.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:28.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.708][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:28.710][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:28.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.712][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.714][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:28.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:28.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.719][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:28.720][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:28.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.722][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.724][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:28.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:28.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.729][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:28.730][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:28.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.732][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.734][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:28.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:28.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.739][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:28.747][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:28.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.750][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.752][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:28.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:28.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.757][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-07 16:03:28.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:28.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.762][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:28.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:28.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.767][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:28.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:28.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.772][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-07 16:03:28.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:28.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.777][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:28.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:28.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.782][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:28.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:28.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.787][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-07 16:03:28.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:28.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.792][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:28.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:28.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.797][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:28.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:28.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.802][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-07 16:03:28.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:28.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.807][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:28.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:28.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.811][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:28.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:28.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.816][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-07 16:03:28.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:28.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.821][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:28.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:28.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.826][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:28.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:28.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.831][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:28.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:28.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.836][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:28.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:28.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.841][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:28.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:28.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:28.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:28.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.850][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:28.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:28.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:28.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:28.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:28.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:28.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:28.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:28.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:28.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:28.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:28.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:28.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:28.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:28.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:28.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:28.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:28.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:28.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:28.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:28.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:28.899][self$createEntryFromContent] Accession numbers: 172429452, 172429246.
biodb.DEBUG[2024-12-07 16:03:28.900][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:28.902][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:28.903][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:28.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:28.910][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:28.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:28.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:28.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:28.915][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:28.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:28.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.920][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:28.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:28.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.925][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:28.926][private$selectFields]
biodb.TRACE[2024-12-07 16:03:28.927][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:28.928][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:28.929][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:28.930][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:28.932][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:28.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.934][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.935][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:28.937][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:28.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.939][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.940][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:28.941][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:28.942][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:28.944][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:28.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.946][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.947][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:28.948][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:28.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:28.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.953][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:28.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:28.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.958][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:28.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:28.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.963][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172431267].
biodb.DEBUG[2024-12-07 16:03:28.965][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:28.966][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:28.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:28.973][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:28.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:28.975][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:28.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:28.978][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:28.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:28.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.982][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:28.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:28.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.987][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:28.988][private$selectFields]
biodb.TRACE[2024-12-07 16:03:28.989][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:28.991][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:28.992][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:28.993][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:28.994][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:28.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:28.997][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:28.998][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:28.999][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:29.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.001][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.003][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:29.004][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:29.005][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:29.006][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:29.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.008][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.010][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:29.011][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:29.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:29.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.016][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:29.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:29.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.021][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:29.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:29.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.026][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172429452].
biodb.DEBUG[2024-12-07 16:03:29.027][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:29.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:29.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:29.035][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:29.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:29.038][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:29.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:29.040][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:29.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:29.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.045][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:29.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:29.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.050][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:29.051][private$selectFields]
biodb.TRACE[2024-12-07 16:03:29.052][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:29.053][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:29.055][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:29.056][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:29.057][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:29.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.059][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.061][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:29.062][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:29.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.064][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.066][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:29.067][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:29.068][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:29.069][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:29.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.072][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.073][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:29.074][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:29.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:29.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.079][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:29.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:29.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.084][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:29.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:29.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.089][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172429246].
biodb.DEBUG[2024-12-07 16:03:29.090][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:29.091][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:29.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:29.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:29.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:29.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:29.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:29.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:29.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:29.113][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:29.118][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:29.119][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:29.121][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-12-07 16:03:29.179][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-12-07 16:03:29.180][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-12-07 16:03:29.182][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-12-07 16:03:29.184][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-12-07 16:03:29.459][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:29.461][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content"
biodb.TRACE[2024-12-07 16:03:29.466][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.request"
biodb.DEBUG[2024-12-07 16:03:29.470][private$loadEntries] Creating entries from ids [1]: "172417275".
biodb.DEBUG[2024-12-07 16:03:29.471][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:03:29.473][cch$loadFileContent] Trying to load 1 files from cache: [1]: "172417275".
biodb.TRACE[2024-12-07 16:03:29.474][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:03:29.476][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:29.477][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:29.478][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-07 16:03:29.480][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:29.481][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-12-07 16:03:29.482][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-12-07 16:03:29.484][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172417275/XML".
biodb.DEBUG[2024-12-07 16:03:29.494][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:29.496][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:29.498][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172417275/XML".
biodb.TRACE[2024-12-07 16:03:29.596][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172417275/XML).
biodb.TRACE[2024-12-07 16:03:29.690][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172417275.xml"
biodb.DEBUG[2024-12-07 16:03:29.692][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:29.693][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:03:29.695][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-12-07 16:03:29.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:29.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:29.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:29.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:29.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:29.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:29.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:29.712][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:29.713][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:29.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.716][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:29.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:29.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.722][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:29.724][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:29.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.726][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.728][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:29.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:29.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.733][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:29.734][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:29.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.737][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.738][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:29.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:29.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.744][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:29.745][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:29.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.747][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.749][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:29.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:29.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.754][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:29.756][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:29.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.758][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:29.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:29.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.765][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:29.766][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:29.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.768][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.770][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:29.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:29.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.775][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:29.776][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:29.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.779][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.780][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:29.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:29.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.785][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:29.787][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:29.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.789][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.791][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:29.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:29.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.796][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:29.797][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:29.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.799][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.801][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:29.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:29.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.806][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:29.807][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:29.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.810][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.811][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:29.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:29.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.816][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:29.818][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:29.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.820][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.822][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:29.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:29.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.827][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:29.828][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:29.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.831][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:29.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:29.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.837][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:29.839][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:29.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.841][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.843][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:29.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:29.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.848][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:29.849][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:29.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.851][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.853][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:29.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:29.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.858][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-07 16:03:29.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:29.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.863][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:29.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:29.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.868][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:29.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:29.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.873][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-07 16:03:29.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:29.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.878][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:29.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:29.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.883][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:29.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:29.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.888][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-07 16:03:29.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:29.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.893][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:29.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:29.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:29.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:29.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.903][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-07 16:03:29.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:29.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:29.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:29.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.913][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:29.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:29.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.919][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-07 16:03:29.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:29.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.924][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:29.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:29.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:29.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:29.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.934][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:29.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:29.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.939][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:29.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:29.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.945][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:29.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:29.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:29.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:29.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.955][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:29.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:29.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:29.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:29.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:29.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:29.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:29.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:29.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:29.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:29.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:29.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:29.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:29.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:29.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:29.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:29.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:29.990][self$createEntryFromContent] Accession numbers: 172417275.
biodb.DEBUG[2024-12-07 16:03:29.992][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:29.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:29.995][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:29.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:30.002][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:30.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:30.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:30.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:30.006][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.011][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.016][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.017][private$selectFields]
biodb.TRACE[2024-12-07 16:03:30.018][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:30.020][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:30.021][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.022][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.023][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.026][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.027][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.028][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.031][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.032][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.033][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.034][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.036][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.038][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.039][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:30.040][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.045][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.050][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.056][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172419784].
biodb.DEBUG[2024-12-07 16:03:30.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:30.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:30.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:30.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:30.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:30.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:30.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:30.070][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.075][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.080][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.081][private$selectFields]
biodb.TRACE[2024-12-07 16:03:30.082][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:30.084][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:30.085][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.086][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.087][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.090][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.091][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.092][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.094][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.096][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.097][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.107][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.108][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.111][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.113][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:30.114][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.119][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.124][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.129][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417275].
biodb.DEBUG[2024-12-07 16:03:30.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:30.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:30.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:30.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:30.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:30.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:30.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:30.144][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.149][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.154][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.155][private$selectFields]
biodb.TRACE[2024-12-07 16:03:30.156][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:30.157][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:30.159][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.160][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.161][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.164][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.165][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.166][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.169][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.170][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.171][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.172][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.174][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.176][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.177][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:30.179][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.184][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.189][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.194][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416872].
biodb.DEBUG[2024-12-07 16:03:30.195][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:30.197][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:30.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:30.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:30.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:30.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:30.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:30.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:30.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:30.243][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:30.248][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:30.249][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9701d2e1a6b096cdfd56943877648611".
biodb.TRACE[2024-12-07 16:03:30.251][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:30.253][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content".
biodb.DEBUG[2024-12-07 16:03:30.255][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:30.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:30.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:30.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:30.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:30.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:30.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:30.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:30.271][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.276][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.281][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.282][private$selectFields]
biodb.TRACE[2024-12-07 16:03:30.283][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:30.285][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:30.286][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.287][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.288][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.291][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.292][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.293][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.296][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.297][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.298][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.299][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.301][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.303][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.305][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:30.306][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.311][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.316][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.322][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417154].
biodb.DEBUG[2024-12-07 16:03:30.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:30.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:30.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:30.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:30.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:30.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:30.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:30.337][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.342][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.348][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.349][private$selectFields]
biodb.TRACE[2024-12-07 16:03:30.350][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:30.351][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:30.352][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.354][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.355][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.358][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.359][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.360][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.363][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.364][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.365][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.366][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.368][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.370][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.371][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:30.373][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.377][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.382][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.388][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417118].
biodb.DEBUG[2024-12-07 16:03:30.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:30.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:30.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:30.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:30.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:30.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:30.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:30.402][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.407][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.412][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.413][private$selectFields]
biodb.TRACE[2024-12-07 16:03:30.414][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:30.415][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:30.416][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.418][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.419][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.421][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.422][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.424][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.426][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.427][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.428][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.430][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.431][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.433][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.434][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:30.436][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.440][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.450][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416756].
biodb.DEBUG[2024-12-07 16:03:30.452][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:30.453][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:30.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:30.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:30.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:30.463][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:30.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:30.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:30.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:30.475][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:30.479][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:30.480][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ce15c6e17e9ed97ba06e918ccdf7a5ba".
biodb.TRACE[2024-12-07 16:03:30.482][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:30.483][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content".
biodb.DEBUG[2024-12-07 16:03:30.485][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:30.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:30.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:30.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:30.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:30.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:30.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:30.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:30.500][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.505][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.510][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.511][private$selectFields]
biodb.TRACE[2024-12-07 16:03:30.512][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:30.513][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:30.515][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.516][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.517][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.519][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.521][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.522][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.524][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.526][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.527][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.528][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.535][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.538][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.540][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:30.541][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.551][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.557][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172419784].
biodb.DEBUG[2024-12-07 16:03:30.558][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:30.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:30.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:30.567][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:30.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:30.569][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:30.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:30.572][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.581][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.583][private$selectFields]
biodb.TRACE[2024-12-07 16:03:30.584][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:30.585][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:30.586][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.587][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.589][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.591][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.592][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.594][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.596][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.597][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.598][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.600][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.601][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.603][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.604][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:30.606][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.611][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.616][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.621][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416823].
biodb.DEBUG[2024-12-07 16:03:30.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:30.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:30.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:30.631][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:30.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:30.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:30.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:30.636][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.640][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.645][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.646][private$selectFields]
biodb.TRACE[2024-12-07 16:03:30.648][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:30.649][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:30.650][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.651][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.652][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.655][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.656][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.657][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.659][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.661][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.662][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.663][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.664][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.667][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.668][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:30.669][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.674][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.679][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.684][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416819].
biodb.DEBUG[2024-12-07 16:03:30.685][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:30.686][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:30.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:30.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:30.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:30.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:30.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:30.722][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:30.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:30.731][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:30.735][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:30.737][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-12-07 16:03:30.738][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:30.740][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-12-07 16:03:30.742][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:30.744][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:30.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:30.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:30.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:30.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:30.754][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:30.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:30.757][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.762][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.767][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.768][private$selectFields]
biodb.TRACE[2024-12-07 16:03:30.769][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:30.770][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:30.771][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.772][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.774][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.776][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.777][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.779][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.781][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.782][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.783][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.784][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.786][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.788][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.789][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:30.790][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.795][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.800][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.805][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417118].
biodb.DEBUG[2024-12-07 16:03:30.807][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:30.808][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:30.809][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:30.815][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:30.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:30.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:30.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:30.820][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.825][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.829][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.831][private$selectFields]
biodb.TRACE[2024-12-07 16:03:30.832][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:30.833][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:30.834][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.835][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.837][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.839][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.840][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.841][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.844][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.845][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.846][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.847][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.849][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.851][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.852][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:30.853][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.858][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.863][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.868][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172414340].
biodb.DEBUG[2024-12-07 16:03:30.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:30.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:30.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:30.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:30.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:30.880][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:30.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:30.882][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.887][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.892][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.893][private$selectFields]
biodb.TRACE[2024-12-07 16:03:30.894][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:30.895][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:30.896][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.898][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.899][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.901][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.902][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.904][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.906][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.907][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.908][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.910][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.911][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.913][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.914][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:30.916][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.921][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.925][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.931][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172414267].
biodb.DEBUG[2024-12-07 16:03:30.932][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:30.933][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:30.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:30.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:30.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:30.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:30.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:30.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:30.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:30.962][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:30.966][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:30.968][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-12-07 16:03:30.969][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:30.971][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-12-07 16:03:30.973][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:30.975][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:30.976][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:30.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:30.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:30.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:30.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:30.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:30.988][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.993][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:30.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:30.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:30.998][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:30.999][private$selectFields]
biodb.TRACE[2024-12-07 16:03:31.000][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:31.001][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:31.002][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:31.003][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.005][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.007][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.008][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.010][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.012][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.013][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:31.014][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:31.016][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.017][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.019][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.020][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:31.022][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.027][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.031][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.037][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172419784].
biodb.DEBUG[2024-12-07 16:03:31.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:31.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:31.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:31.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:31.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:31.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:31.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:31.051][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.055][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.060][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:31.061][private$selectFields]
biodb.TRACE[2024-12-07 16:03:31.063][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:31.064][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:31.065][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:31.066][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.067][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.070][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.071][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.072][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.074][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.076][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:31.077][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:31.078][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.079][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.082][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.083][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:31.084][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.089][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.094][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.099][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416823].
biodb.DEBUG[2024-12-07 16:03:31.100][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:31.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:31.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:31.109][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:31.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:31.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:31.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:31.113][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.118][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.123][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:31.124][private$selectFields]
biodb.TRACE[2024-12-07 16:03:31.125][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:31.126][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:31.128][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:31.129][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.130][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.132][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.134][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.135][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.137][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.139][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:31.140][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:31.141][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.142][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.144][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.146][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:31.147][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.152][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.157][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.162][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416819].
biodb.DEBUG[2024-12-07 16:03:31.163][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:31.164][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:31.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:31.190][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:31.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:31.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:31.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:31.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:31.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:31.209][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:31.213][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:31.215][cch$loadFileContent] Trying to load 1 files from cache: [1]: "897c6c1cf86bb233833a030ee6928dbf".
biodb.TRACE[2024-12-07 16:03:31.216][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:31.218][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content".
biodb.DEBUG[2024-12-07 16:03:31.220][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:31.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:31.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:31.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:31.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:31.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:31.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:31.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:31.235][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.240][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.245][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:31.246][private$selectFields]
biodb.TRACE[2024-12-07 16:03:31.247][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:31.248][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:31.249][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:31.251][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.252][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.254][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.255][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.257][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.259][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.260][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:31.261][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:31.263][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.264][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.267][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.268][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:31.269][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.274][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.280][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.285][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172431267].
biodb.DEBUG[2024-12-07 16:03:31.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:31.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:31.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:31.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:31.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:31.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:31.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:31.299][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.304][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.309][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:31.310][private$selectFields]
biodb.TRACE[2024-12-07 16:03:31.312][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:31.313][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:31.314][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:31.315][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.316][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.319][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.320][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.321][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.324][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.325][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:31.326][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:31.327][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.328][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.331][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.332][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:31.333][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.338][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.343][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.348][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172429452].
biodb.DEBUG[2024-12-07 16:03:31.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:31.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:31.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:31.358][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:31.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:31.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:31.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:31.362][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.373][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.379][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:31.380][private$selectFields]
biodb.TRACE[2024-12-07 16:03:31.381][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:31.382][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:31.384][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:31.385][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.386][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.388][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.390][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.391][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.393][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.395][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:31.396][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:31.397][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.398][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.401][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.402][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:31.403][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.408][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.413][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.418][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172429246].
biodb.DEBUG[2024-12-07 16:03:31.419][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:31.421][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:31.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:31.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:31.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:31.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:31.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:31.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:31.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:31.444][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:31.448][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:31.450][cch$loadFileContent] Trying to load 1 files from cache: [1]: "56a93d3214bbb5417ad13002a40518e8".
biodb.TRACE[2024-12-07 16:03:31.451][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:31.453][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content".
biodb.DEBUG[2024-12-07 16:03:31.455][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:31.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:31.458][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:31.459][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:31.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:31.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:31.468][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:31.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:31.470][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.475][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.480][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:31.481][private$selectFields]
biodb.TRACE[2024-12-07 16:03:31.482][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:31.483][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:31.485][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:31.486][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.487][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.489][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.491][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.492][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.494][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.496][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:31.497][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:31.498][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.499][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.502][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.503][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:31.504][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.509][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.514][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.519][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172419784].
biodb.DEBUG[2024-12-07 16:03:31.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:31.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:31.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:31.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:31.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:31.531][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:31.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:31.534][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.539][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.544][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:31.545][private$selectFields]
biodb.TRACE[2024-12-07 16:03:31.546][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:31.547][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:31.549][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:31.550][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.551][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.553][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.555][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.556][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.558][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.560][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:31.561][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:31.562][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.563][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.566][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.567][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:31.568][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.573][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.578][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.583][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417275].
biodb.DEBUG[2024-12-07 16:03:31.585][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:31.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:31.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:31.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:31.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:31.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:31.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:31.598][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.603][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.608][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:31.609][private$selectFields]
biodb.TRACE[2024-12-07 16:03:31.610][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:31.611][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:31.613][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:31.614][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.615][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.617][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.619][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.620][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.622][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.624][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:31.625][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:31.626][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.627][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.630][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.631][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:31.632][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.637][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.642][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:31.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.648][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416872].
biodb.DEBUG[2024-12-07 16:03:31.649][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:31.650][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-07 16:03:31.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:31.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:31.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:31.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:31.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.685][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:31.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:31.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:31.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:31.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:31.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:31.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:31.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:31.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:31.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:31.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:31.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:31.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:31.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:31.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:31.717][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:31.719][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:31.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:31.726][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:31.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:31.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:31.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:31.738][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:31.743][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:31.744][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:31.746][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-12-07 16:03:31.806][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-12-07 16:03:31.807][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-12-07 16:03:31.809][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-12-07 16:03:31.811][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-12-07 16:03:31.882][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:31.884][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content"
biodb.TRACE[2024-12-07 16:03:31.889][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.request"
biodb.DEBUG[2024-12-07 16:03:31.892][private$loadEntries] Creating entries from ids [1]: "172417354".
biodb.DEBUG[2024-12-07 16:03:31.893][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:03:31.895][cch$loadFileContent] Trying to load 1 files from cache: [1]: "172417354".
biodb.TRACE[2024-12-07 16:03:31.897][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:03:31.898][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:31.899][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:31.900][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-07 16:03:31.902][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:31.903][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-12-07 16:03:31.904][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-12-07 16:03:31.906][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172417354/XML".
biodb.DEBUG[2024-12-07 16:03:31.909][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:31.911][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:31.912][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172417354/XML".
biodb.TRACE[2024-12-07 16:03:32.005][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172417354/XML).
biodb.TRACE[2024-12-07 16:03:32.118][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172417354.xml"
biodb.DEBUG[2024-12-07 16:03:32.121][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:32.132][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:03:32.134][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-12-07 16:03:32.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:32.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:32.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:32.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:32.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:32.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:32.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:32.152][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:32.153][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:32.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.156][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:32.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:32.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.163][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:32.164][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:32.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.166][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.168][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:32.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:32.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.173][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:32.174][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:32.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.177][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.178][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:32.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:32.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.184][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:32.185][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:32.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.187][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.189][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:32.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:32.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.194][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:32.195][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:32.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.198][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:32.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:32.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.205][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:32.206][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:32.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.208][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.210][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:32.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:32.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.215][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:32.216][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:32.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.219][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.220][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:32.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:32.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.226][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:32.227][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:32.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.229][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.231][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:32.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:32.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.236][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:32.237][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:32.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.240][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.241][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:32.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:32.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.246][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:32.248][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:32.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.250][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.252][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:32.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:32.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.257][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:32.258][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:32.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.260][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.262][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:32.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:32.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.267][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:32.268][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:32.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.271][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.272][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:32.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:32.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.277][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:32.279][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:32.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.281][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.283][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:32.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:32.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.288][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:32.289][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:32.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.291][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.293][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:32.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:32.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.298][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-07 16:03:32.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:32.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.303][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:32.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:32.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:32.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:32.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.313][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-07 16:03:32.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:32.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.318][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:32.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:32.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.323][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:32.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:32.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.328][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-07 16:03:32.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:32.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.333][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:32.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:32.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.338][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:32.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:32.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.343][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-07 16:03:32.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:32.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.348][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:32.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:32.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.353][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:32.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:32.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.358][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-07 16:03:32.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:32.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.363][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:32.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:32.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.368][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:32.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:32.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.373][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:32.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:32.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.378][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.383][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:32.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:32.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.393][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:32.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:32.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:32.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:32.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:32.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:32.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:32.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:32.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:32.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:32.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:32.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:32.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:32.428][self$createEntryFromContent] Accession numbers: 172417354.
biodb.DEBUG[2024-12-07 16:03:32.430][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:32.432][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:32.433][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:32.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:32.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:32.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:32.443][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:32.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:32.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.450][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.455][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:32.457][private$selectFields]
biodb.TRACE[2024-12-07 16:03:32.458][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:32.459][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:32.460][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:32.462][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.463][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.465][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.466][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.468][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.470][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.471][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:32.473][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:32.474][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.475][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.478][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.479][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:32.480][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.485][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.491][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.496][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172431267].
biodb.DEBUG[2024-12-07 16:03:32.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:32.499][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:32.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:32.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:32.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:32.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:32.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:32.511][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.516][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.521][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:32.522][private$selectFields]
biodb.TRACE[2024-12-07 16:03:32.523][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:32.525][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:32.526][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:32.527][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.528][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.531][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.532][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.533][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.536][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.537][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:32.538][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:32.539][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.541][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.543][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.544][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:32.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.557][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.563][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.568][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417440].
biodb.DEBUG[2024-12-07 16:03:32.570][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:32.571][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:32.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:32.578][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:32.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:32.581][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:32.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:32.583][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.588][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.593][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:32.595][private$selectFields]
biodb.TRACE[2024-12-07 16:03:32.596][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:32.597][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:32.598][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:32.599][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.601][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.603][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.604][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.606][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.608][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.610][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:32.611][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:32.612][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.613][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.616][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.617][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:32.618][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.623][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.628][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:32.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:32.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:32.634][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417354].
biodb.DEBUG[2024-12-07 16:03:32.635][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:32.636][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:32.639][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:32.640][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:32.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:32.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:32.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:32.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:32.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:32.659][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:32.664][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:32.665][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:32.668][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-12-07 16:03:32.725][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-12-07 16:03:32.726][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-12-07 16:03:32.728][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-12-07 16:03:32.730][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-12-07 16:03:32.901][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:32.904][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content"
biodb.TRACE[2024-12-07 16:03:32.909][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.request"
biodb.DEBUG[2024-12-07 16:03:32.911][private$loadEntries] Creating entries from ids [1]: "172417240".
biodb.DEBUG[2024-12-07 16:03:32.913][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:03:32.915][cch$loadFileContent] Trying to load 1 files from cache: [1]: "172417240".
biodb.TRACE[2024-12-07 16:03:32.916][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:03:32.918][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:03:32.919][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:32.920][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-07 16:03:32.921][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:03:32.923][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-12-07 16:03:32.924][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-12-07 16:03:32.926][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172417240/XML".
biodb.DEBUG[2024-12-07 16:03:32.929][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:32.930][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:32.932][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172417240/XML".
biodb.TRACE[2024-12-07 16:03:33.028][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172417240/XML).
biodb.TRACE[2024-12-07 16:03:33.156][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172417240.xml"
biodb.DEBUG[2024-12-07 16:03:33.158][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:03:33.160][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:03:33.162][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-12-07 16:03:33.164][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:33.165][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:33.166][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:33.173][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:33.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:33.175][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:33.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:33.179][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:33.181][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:33.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.183][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:33.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:33.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.190][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:33.191][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:33.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.194][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.195][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:33.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:33.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.200][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:33.202][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:33.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.204][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:33.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:33.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.211][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:33.212][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:33.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.215][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.216][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:33.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:33.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.222][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:33.223][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:33.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.225][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.227][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:33.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:33.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.232][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:33.233][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:33.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.236][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.237][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:33.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:33.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.242][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:33.244][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:33.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.246][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.248][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-12-07 16:03:33.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:33.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.253][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:33.254][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:33.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.257][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.258][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:33.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:33.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.263][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:33.265][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:33.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.267][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.269][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:33.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:33.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.274][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:33.275][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:33.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.277][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.279][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:33.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:33.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.284][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:33.286][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:33.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.288][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.290][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:33.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:33.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.295][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:33.296][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:33.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.299][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-12-07 16:03:33.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:33.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.306][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:33.307][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:33.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.309][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.311][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:33.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:33.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.316][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:33.317][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:33.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.320][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.321][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:33.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:33.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.327][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-12-07 16:03:33.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:33.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.332][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:33.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:33.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.337][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:33.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:33.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.342][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-12-07 16:03:33.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:33.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.347][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:33.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:33.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.352][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:33.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:33.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.357][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-12-07 16:03:33.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:33.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.362][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:33.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:33.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.367][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:33.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:33.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.372][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-12-07 16:03:33.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:33.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.378][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:33.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:33.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:33.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:33.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.388][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-12-07 16:03:33.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:33.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:33.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:33.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.398][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:33.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:33.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.403][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:33.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:33.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.408][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.414][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:33.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:33.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.424][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:33.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:33.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:33.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:33.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:33.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:33.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:33.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:33.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:33.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:33.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:33.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:33.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:33.471][self$createEntryFromContent] Accession numbers: 172417240.
biodb.DEBUG[2024-12-07 16:03:33.472][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:33.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:33.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:33.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:33.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:33.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:33.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:33.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:33.488][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.493][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.498][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:33.499][private$selectFields]
biodb.TRACE[2024-12-07 16:03:33.500][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:33.501][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:33.502][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:33.504][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.505][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.507][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.509][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.510][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.512][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.514][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:33.515][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:33.516][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.517][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.520][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.521][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:33.522][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.527][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.532][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.538][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172420161].
biodb.DEBUG[2024-12-07 16:03:33.539][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:33.540][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:33.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:33.547][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:33.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:33.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:33.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:33.552][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.557][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.562][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:33.564][private$selectFields]
biodb.TRACE[2024-12-07 16:03:33.565][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:33.566][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:33.567][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:33.568][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.570][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.572][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.573][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.575][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.577][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.578][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:33.580][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:33.581][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.582][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.584][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.586][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:33.587][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.592][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.597][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.602][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417240].
biodb.DEBUG[2024-12-07 16:03:33.604][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:33.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:33.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:33.612][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:33.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:33.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:33.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:33.617][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.622][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.627][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:33.628][private$selectFields]
biodb.TRACE[2024-12-07 16:03:33.630][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:33.631][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:33.632][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:33.633][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.635][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.637][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.638][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.639][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.642][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.643][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:33.644][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:33.646][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.647][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.649][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.650][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:33.652][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.657][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.662][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.668][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416872].
biodb.DEBUG[2024-12-07 16:03:33.669][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:33.670][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:33.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:33.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:33.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:33.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:33.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:33.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:33.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:33.717][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:33.721][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:33.723][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-12-07 16:03:33.724][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:33.726][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-12-07 16:03:33.728][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:33.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:33.731][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:33.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:33.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:33.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:33.741][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:33.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:33.744][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.749][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.754][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:33.755][private$selectFields]
biodb.TRACE[2024-12-07 16:03:33.756][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:33.757][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:33.758][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:33.759][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.761][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.763][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.764][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.766][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.768][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.769][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:33.771][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:33.772][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.773][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.776][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.777][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:33.778][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.783][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.788][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.793][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172431267].
biodb.DEBUG[2024-12-07 16:03:33.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:33.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:33.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:33.803][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:33.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:33.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:33.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:33.808][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.813][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.818][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:33.819][private$selectFields]
biodb.TRACE[2024-12-07 16:03:33.820][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:33.821][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:33.822][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:33.824][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.825][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.827][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.829][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.830][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.832][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.834][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:33.835][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:33.836][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.837][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.840][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.841][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:33.842][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.847][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.852][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.864][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417440].
biodb.DEBUG[2024-12-07 16:03:33.865][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:33.867][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:33.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:33.874][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:33.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:33.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:33.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:33.879][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.884][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.889][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:33.890][private$selectFields]
biodb.TRACE[2024-12-07 16:03:33.892][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:33.893][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:33.894][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:33.895][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.897][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.899][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.900][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.902][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.904][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.905][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:33.906][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:33.908][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.909][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.911][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.913][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:33.914][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.919][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.924][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.930][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172414169].
biodb.DEBUG[2024-12-07 16:03:33.931][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:33.932][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:33.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:33.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:33.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:33.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:33.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:33.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:33.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:33.955][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:33.959][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:33.961][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-12-07 16:03:33.962][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:33.964][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-12-07 16:03:33.966][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:33.968][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:33.969][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:33.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:33.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:33.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:33.979][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:33.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:33.982][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.987][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:33.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:33.992][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:33.993][private$selectFields]
biodb.TRACE[2024-12-07 16:03:33.994][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:33.996][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:33.997][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:33.998][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:33.999][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.002][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.003][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.004][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.007][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.008][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:34.009][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:34.011][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.012][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.014][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.016][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:34.017][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.022][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.027][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.032][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172420161].
biodb.DEBUG[2024-12-07 16:03:34.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:34.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:34.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:34.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:34.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:34.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:34.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:34.047][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.052][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.057][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:34.058][private$selectFields]
biodb.TRACE[2024-12-07 16:03:34.060][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:34.061][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:34.062][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:34.063][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.065][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.067][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.068][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.070][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.072][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.073][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:34.074][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:34.076][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.077][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.079][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.081][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:34.082][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.087][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.092][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.098][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416872].
biodb.DEBUG[2024-12-07 16:03:34.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:34.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:34.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:34.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:34.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:34.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:34.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:34.113][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.118][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.123][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:34.124][private$selectFields]
biodb.TRACE[2024-12-07 16:03:34.125][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:34.126][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:34.127][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:34.129][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.130][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.132][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.133][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.135][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.137][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.138][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:34.140][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:34.141][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.142][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.145][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.146][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:34.147][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.152][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.157][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.162][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416854].
biodb.DEBUG[2024-12-07 16:03:34.164][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:34.165][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:34.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:34.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:34.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:34.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:34.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:34.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:34.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:34.212][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:34.216][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:34.218][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:34.220][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-12-07 16:03:34.280][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-12-07 16:03:34.281][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-12-07 16:03:34.283][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-12-07 16:03:34.285][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-12-07 16:03:34.355][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:34.358][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content"
biodb.TRACE[2024-12-07 16:03:34.363][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.request"
biodb.DEBUG[2024-12-07 16:03:34.365][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:34.367][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:34.369][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:34.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:34.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:34.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:34.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:34.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:34.381][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.386][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.391][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:34.392][private$selectFields]
biodb.TRACE[2024-12-07 16:03:34.393][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:34.394][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:34.396][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:34.397][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.398][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.401][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.402][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.403][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.406][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.407][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:34.408][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:34.410][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.411][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.413][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.421][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:34.424][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.430][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.435][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.441][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172431267].
biodb.DEBUG[2024-12-07 16:03:34.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:34.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:34.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:34.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:34.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:34.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:34.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:34.456][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.461][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.466][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:34.467][private$selectFields]
biodb.TRACE[2024-12-07 16:03:34.468][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:34.469][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:34.470][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:34.472][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.473][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.475][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.477][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.478][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.481][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.482][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:34.483][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:34.484][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.486][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.488][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.489][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:34.491][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.496][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.501][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.507][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172429452].
biodb.DEBUG[2024-12-07 16:03:34.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:34.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:34.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:34.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:34.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:34.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:34.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:34.522][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.528][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.533][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:34.534][private$selectFields]
biodb.TRACE[2024-12-07 16:03:34.535][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:34.536][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:34.537][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:34.539][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.540][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.543][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.544][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.545][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.548][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.549][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:34.550][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:34.551][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.553][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.555][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.556][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:34.558][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.563][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.568][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.573][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172429246].
biodb.DEBUG[2024-12-07 16:03:34.574][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:34.576][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:34.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:34.579][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:34.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:34.587][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:34.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:34.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:34.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:34.599][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:34.604][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:03:34.605][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:03:34.608][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-12-07 16:03:34.667][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-12-07 16:03:34.669][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-12-07 16:03:34.671][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-12-07 16:03:34.672][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-12-07 16:03:34.898][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:03:34.901][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content"
biodb.TRACE[2024-12-07 16:03:34.906][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.request"
biodb.DEBUG[2024-12-07 16:03:34.908][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:34.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:34.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:34.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:34.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:34.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:34.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:34.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:34.923][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.928][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.933][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:34.934][private$selectFields]
biodb.TRACE[2024-12-07 16:03:34.935][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:34.937][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:34.938][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:34.939][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.940][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.943][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.944][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.945][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.948][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.949][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:34.950][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:34.951][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.952][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.955][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.956][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:34.957][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.962][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.967][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.972][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172420161].
biodb.DEBUG[2024-12-07 16:03:34.974][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:34.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:34.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:34.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:34.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:34.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:34.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:34.987][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.992][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:34.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:34.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:34.997][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:34.998][private$selectFields]
biodb.TRACE[2024-12-07 16:03:34.999][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:35.000][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:35.002][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.003][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.004][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.006][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.008][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.009][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.011][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.013][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.014][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.015][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.016][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.019][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.020][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:35.021][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.026][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.031][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.037][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172419784].
biodb.DEBUG[2024-12-07 16:03:35.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:35.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:35.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:35.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:35.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:35.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:35.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:35.051][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.056][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.061][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.062][private$selectFields]
biodb.TRACE[2024-12-07 16:03:35.063][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:35.064][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:35.066][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.067][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.068][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.070][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.072][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.073][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.075][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.077][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.078][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.079][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.080][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.083][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.084][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:35.085][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.090][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.095][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.100][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417275].
biodb.DEBUG[2024-12-07 16:03:35.101][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:35.103][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:35.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:35.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:35.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:35.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:35.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:35.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:35.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:35.158][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:35.162][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:35.164][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8ad32143f99567438eba281a371befbc".
biodb.TRACE[2024-12-07 16:03:35.165][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:35.167][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content".
biodb.DEBUG[2024-12-07 16:03:35.169][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:35.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:35.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:35.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:35.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:35.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:35.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:35.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:35.184][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.189][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.194][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.195][private$selectFields]
biodb.TRACE[2024-12-07 16:03:35.196][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:35.198][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:35.199][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.200][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.201][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.204][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.205][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.206][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.209][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.210][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.211][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.213][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.214][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.216][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.217][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:35.219][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.224][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.229][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.234][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172431267].
biodb.DEBUG[2024-12-07 16:03:35.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:35.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:35.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:35.244][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:35.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:35.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:35.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:35.249][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.254][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.259][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.260][private$selectFields]
biodb.TRACE[2024-12-07 16:03:35.261][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:35.262][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:35.263][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.265][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.266][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.269][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.270][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.271][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.273][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.275][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.276][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.277][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.279][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.281][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.282][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:35.284][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.289][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.294][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.299][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417440].
biodb.DEBUG[2024-12-07 16:03:35.300][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:35.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:35.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:35.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:35.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:35.311][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:35.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:35.314][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.319][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.324][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.325][private$selectFields]
biodb.TRACE[2024-12-07 16:03:35.326][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:35.327][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:35.329][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.330][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.331][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.333][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.335][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.336][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.338][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.340][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.341][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.342][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.343][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.346][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.347][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:35.348][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.353][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.358][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.364][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417354].
biodb.DEBUG[2024-12-07 16:03:35.365][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:35.366][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:35.368][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:35.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:35.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:35.377][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:35.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:35.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:35.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:35.389][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:35.393][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:35.395][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ead2a4c6d4c972bfbf7c3e8a0e8299c8".
biodb.TRACE[2024-12-07 16:03:35.396][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:35.398][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content".
biodb.DEBUG[2024-12-07 16:03:35.400][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:35.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:35.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:35.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:35.411][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:35.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:35.413][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:35.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:35.416][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.421][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.426][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.427][private$selectFields]
biodb.TRACE[2024-12-07 16:03:35.428][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:35.429][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:35.431][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.432][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.433][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.436][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.437][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.438][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.441][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.442][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.443][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.445][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.446][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.449][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.450][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:35.451][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.457][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.462][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.468][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172420161].
biodb.DEBUG[2024-12-07 16:03:35.469][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:35.470][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:35.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:35.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:35.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:35.480][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:35.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:35.483][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.488][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.493][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.494][private$selectFields]
biodb.TRACE[2024-12-07 16:03:35.495][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:35.496][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:35.498][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.499][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.500][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.502][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.504][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.505][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.507][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.509][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.510][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.511][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.512][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.515][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.516][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:35.517][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.522][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.528][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.533][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417240].
biodb.DEBUG[2024-12-07 16:03:35.534][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:35.535][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:35.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:35.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:35.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:35.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:35.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:35.547][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.552][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.568][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.570][private$selectFields]
biodb.TRACE[2024-12-07 16:03:35.571][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:35.573][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:35.574][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.575][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.577][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.579][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.580][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.582][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.584][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.585][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.587][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.588][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.589][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.591][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.593][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:35.594][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.599][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.604][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.609][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416872].
biodb.DEBUG[2024-12-07 16:03:35.610][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:35.611][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:35.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:35.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:35.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:35.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:35.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:35.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:35.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:35.657][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:35.661][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:35.663][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-12-07 16:03:35.664][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:35.666][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-12-07 16:03:35.668][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:35.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:35.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:35.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:35.678][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:35.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:35.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:35.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:35.683][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.688][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.693][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.694][private$selectFields]
biodb.TRACE[2024-12-07 16:03:35.696][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:35.697][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:35.698][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.699][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.701][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.703][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.704][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.706][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.708][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.709][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.710][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.712][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.713][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.715][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.717][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:35.718][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.723][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.728][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.733][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172431267].
biodb.DEBUG[2024-12-07 16:03:35.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:35.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:35.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:35.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:35.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:35.745][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:35.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:35.748][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.753][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.758][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.759][private$selectFields]
biodb.TRACE[2024-12-07 16:03:35.760][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:35.762][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:35.763][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.764][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.765][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.768][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.769][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.770][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.773][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.774][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.775][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.776][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.778][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.780][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.781][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:35.783][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.788][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.793][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.798][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417440].
biodb.DEBUG[2024-12-07 16:03:35.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:35.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:35.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:35.808][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:35.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:35.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:35.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:35.813][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.818][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.823][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.824][private$selectFields]
biodb.TRACE[2024-12-07 16:03:35.825][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:35.826][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:35.828][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.829][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.830][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.833][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.834][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.835][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.838][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.839][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.840][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.841][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.843][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.845][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.846][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:35.848][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.852][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.857][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.863][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172414169].
biodb.DEBUG[2024-12-07 16:03:35.864][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:35.865][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:35.868][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:35.869][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:35.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:35.876][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:35.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:35.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:35.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:35.888][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:35.892][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:35.894][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-12-07 16:03:35.895][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:35.897][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-12-07 16:03:35.899][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:35.901][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:35.902][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:35.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:35.910][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:35.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:35.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:35.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:35.915][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.920][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.925][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.926][private$selectFields]
biodb.TRACE[2024-12-07 16:03:35.927][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:35.928][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:35.930][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.931][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.932][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.935][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.936][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.938][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.940][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.941][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.942][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.944][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.945][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.947][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.948][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:35.950][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.955][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.960][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.966][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172420161].
biodb.DEBUG[2024-12-07 16:03:35.967][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:35.968][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:35.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:35.975][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:35.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:35.977][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:35.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:35.980][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.985][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:35.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:35.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:35.990][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:35.997][private$selectFields]
biodb.TRACE[2024-12-07 16:03:35.999][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:36.000][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:36.002][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:36.003][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.005][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.007][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.009][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.010][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.012][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.014][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:36.015][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:36.016][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.018][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.020][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.021][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:36.022][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.027][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.032][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.038][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416872].
biodb.DEBUG[2024-12-07 16:03:36.039][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:36.040][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:36.041][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:36.048][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:36.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:36.050][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:36.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:36.053][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.058][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.063][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:36.064][private$selectFields]
biodb.TRACE[2024-12-07 16:03:36.065][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:36.066][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:36.067][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:36.069][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.070][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.072][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.074][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.075][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.077][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.079][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:36.080][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:36.081][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.082][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.085][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.086][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:36.087][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.092][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.097][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.103][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416854].
biodb.DEBUG[2024-12-07 16:03:36.104][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:36.105][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:36.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:36.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:36.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:36.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:36.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:36.142][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:36.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:36.151][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:36.155][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:36.157][cch$loadFileContent] Trying to load 1 files from cache: [1]: "93b38cb571769a97b3321f7f5a86241a".
biodb.TRACE[2024-12-07 16:03:36.159][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:36.160][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content".
biodb.DEBUG[2024-12-07 16:03:36.162][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:36.164][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:36.165][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:36.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:36.173][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:36.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:36.175][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:36.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:36.178][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.183][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.188][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:36.189][private$selectFields]
biodb.TRACE[2024-12-07 16:03:36.190][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:36.191][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:36.192][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:36.194][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.195][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.197][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.199][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.200][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.202][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.204][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:36.205][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:36.206][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.207][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.210][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.211][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:36.212][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.217][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.222][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.228][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172431267].
biodb.DEBUG[2024-12-07 16:03:36.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:36.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:36.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:36.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:36.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:36.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:36.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:36.243][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.248][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.253][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:36.254][private$selectFields]
biodb.TRACE[2024-12-07 16:03:36.255][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:36.256][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:36.258][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:36.259][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.260][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.263][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.264][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.265][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.267][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.269][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:36.270][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:36.271][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.273][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.275][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.276][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:36.277][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.282][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.287][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.293][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172429452].
biodb.DEBUG[2024-12-07 16:03:36.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:36.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:36.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:36.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:36.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:36.305][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:36.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:36.307][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.312][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.317][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:36.319][private$selectFields]
biodb.TRACE[2024-12-07 16:03:36.320][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:36.321][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:36.322][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:36.323][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.325][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.327][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.328][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.330][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.332][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.333][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:36.334][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:36.336][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.337][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.339][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.341][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:36.342][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.347][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.352][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.357][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172429246].
biodb.DEBUG[2024-12-07 16:03:36.358][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:36.360][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:36.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:36.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:36.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:36.371][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:36.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:36.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:36.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:36.383][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:36.387][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:36.388][cch$loadFileContent] Trying to load 1 files from cache: [1]: "405cf707472983a89dc9e0092ca888ad".
biodb.TRACE[2024-12-07 16:03:36.390][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:36.392][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content".
biodb.DEBUG[2024-12-07 16:03:36.394][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:36.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:36.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:36.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:36.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:36.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:36.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:36.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:36.409][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.414][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.419][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:36.421][private$selectFields]
biodb.TRACE[2024-12-07 16:03:36.422][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:36.429][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:36.430][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:36.432][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.433][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.436][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.438][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.439][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.441][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.443][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:36.444][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:36.445][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.446][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.449][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.450][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:36.451][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.456][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.461][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.467][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172420161].
biodb.DEBUG[2024-12-07 16:03:36.468][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:36.469][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:36.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:36.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:36.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:36.479][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:36.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:36.482][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.487][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.492][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:36.493][private$selectFields]
biodb.TRACE[2024-12-07 16:03:36.494][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:36.495][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:36.497][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:36.498][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.499][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.502][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.503][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.504][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.507][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.508][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:36.509][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:36.511][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.512][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.514][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.516][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:36.517][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.522][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.527][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.532][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172419784].
biodb.DEBUG[2024-12-07 16:03:36.534][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:36.535][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:36.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:36.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:36.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:36.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:36.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:36.547][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.552][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.557][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:36.558][private$selectFields]
biodb.TRACE[2024-12-07 16:03:36.559][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:36.561][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:36.562][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:36.563][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.564][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.567][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.568][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.569][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.572][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.573][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:36.574][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-12-07 16:03:36.575][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.577][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.579][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.580][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-12-07 16:03:36.582][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.587][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.592][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.597][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417275].
biodb.DEBUG[2024-12-07 16:03:36.598][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:36.599][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-07 16:03:36.622][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:36.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:36.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.627][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:36.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:36.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-07 16:03:36.637][biodb::testThat]
biodb.INFO [2024-12-07 16:03:36.638][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2024-12-07 16:03:36.639][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:03:36.640][biodb::testThat]
biodb.TRACE[2024-12-07 16:03:36.644][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:03:36.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:03:36.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.649][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:03:36.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:03:36.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:36.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:36.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:36.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:36.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:36.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:36.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:36.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:36.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:36.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:36.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:36.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:36.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:36.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:36.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:36.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:36.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:36.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:36.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:36.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:36.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:36.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:36.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:36.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:36.716][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:36.720][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:36.722][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-12-07 16:03:36.724][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:36.725][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-12-07 16:03:36.727][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:36.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:36.731][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:36.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:36.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:36.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:36.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:36.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:36.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:36.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:36.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:36.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:36.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.752][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:36.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:36.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.757][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:36.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:36.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.762][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:36.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:36.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.767][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:36.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:36.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.772][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:36.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:36.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.777][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:36.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:36.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.782][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:36.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:36.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.787][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:36.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:36.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.792][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:36.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:36.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.797][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:36.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:36.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.802][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:36.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:36.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.807][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:36.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:36.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.812][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:36.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:36.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.817][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:36.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:36.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.822][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:36.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:36.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:36.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:36.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.832][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:36.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:36.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.837][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:36.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:36.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:36.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:36.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:36.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:36.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:36.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:36.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:36.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:36.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.869][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:36.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:36.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.874][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:36.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:36.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.879][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.884][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.889][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:36.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:36.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.894][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:36.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:36.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.899][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:36.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:36.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.904][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:36.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:36.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.909][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:36.910][private$selectFields]
biodb.TRACE[2024-12-07 16:03:36.912][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:36.913][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:36.914][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:36.915][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:36.917][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:36.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.919][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.920][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:36.922][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:36.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.924][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.925][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:36.927][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:36.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.929][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.930][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:36.932][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:36.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.934][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.935][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:36.937][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:36.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.939][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.940][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:36.942][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:36.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.944][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.945][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:36.947][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:36.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.949][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.950][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:36.952][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:36.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.954][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.955][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:36.956][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:36.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.959][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.960][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:36.961][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:36.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.964][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.965][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:36.967][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:36.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.969][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.970][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:36.972][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:36.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.974][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.975][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:36.977][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:36.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.979][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.980][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.982][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:36.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.984][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.985][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:36.987][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:36.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.989][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.990][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:36.992][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:36.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.994][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:36.995][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:36.997][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:36.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:36.999][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.000][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:37.002][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:37.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.004][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.005][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:37.007][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:37.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.009][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.010][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:37.012][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:37.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.014][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.015][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:37.017][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:37.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.019][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.020][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:37.022][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:37.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.024][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.025][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:37.027][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:37.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.029][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.030][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:37.031][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:37.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.034][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.035][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:37.036][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:37.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.039][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.040][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:37.041][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:37.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.044][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.045][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:37.046][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:37.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.049][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.050][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:37.051][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:37.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.054][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.055][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:37.056][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:37.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.059][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.060][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:37.061][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:37.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.064][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.065][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:37.066][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:37.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.069][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.070][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:37.071][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:37.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.074][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.075][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:37.076][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:37.078][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:37.079][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:37.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.081][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.082][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:37.084][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:37.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.086][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.087][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:37.089][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:37.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.091][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.092][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:37.094][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:37.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.096][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.097][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:37.099][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:37.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.101][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.102][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:37.104][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:37.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.106][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.107][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:37.108][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:37.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.111][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.112][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:37.113][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:37.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.116][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.117][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:37.118][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:37.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.121][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.122][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:37.123][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:37.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.126][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.127][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:37.128][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:37.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.130][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.132][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:37.133][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:37.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.135][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.137][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:37.138][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:37.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.140][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.142][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:37.143][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:37.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.145][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.147][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:37.148][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:37.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.150][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.151][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:37.153][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:37.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.155][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.156][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-07 16:03:37.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:37.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:37.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:37.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:37.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:37.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:37.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.173][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:37.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:37.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.178][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:37.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:37.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:37.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:37.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.188][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:37.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:37.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:37.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:37.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.198][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:37.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:37.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.203][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:37.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:37.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.208][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:37.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:37.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.213][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:37.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:37.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.219][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:37.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:37.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.224][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:37.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:37.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.229][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:37.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:37.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.234][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:37.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:37.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.239][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:37.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:37.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.244][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:37.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:37.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.249][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:37.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:37.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.254][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:37.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:37.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.259][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:37.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:37.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.264][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:37.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:37.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.276][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:37.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:37.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.282][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:37.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:37.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.288][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:37.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:37.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.294][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:37.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:37.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.300][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:37.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:37.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.305][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:37.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:37.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.310][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:37.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:37.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.315][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:37.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:37.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:37.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:37.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:37.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:37.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:37.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:37.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:37.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:37.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:37.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:37.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:37.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:37.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.353][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:37.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:37.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.358][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:37.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:37.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.363][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:37.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:37.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.369][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:37.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:37.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.374][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:37.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:37.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.379][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:37.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:37.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.384][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:37.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:37.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.389][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:37.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:37.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.395][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:37.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:37.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.401][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:37.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:37.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.406][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:37.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:37.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.451][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:37.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:37.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.474][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172417118, 2-(2-pyrazol-1-ylethoxy)pyridin-3-amine, 2-[2-(1-pyrazolyl)ethoxy]-3-pyridinamine, 2-(2-pyrazol-1-ylethoxy)pyridin-3-amine, 2-(2-pyrazol-1-ylethoxy)pyridin-3-amine, ...].
biodb.DEBUG[2024-12-07 16:03:37.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:37.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:37.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:37.488][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:37.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:37.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:37.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:37.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:37.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:37.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:37.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:37.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.503][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:37.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:37.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:37.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:37.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:37.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:37.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:37.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:37.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.524][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:37.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:37.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.529][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:37.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:37.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.534][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:37.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:37.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.539][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:37.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:37.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.544][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:37.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:37.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.549][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:37.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:37.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.554][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:37.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:37.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.559][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:37.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:37.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.564][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:37.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:37.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.569][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:37.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:37.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.574][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:37.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:37.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.579][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:37.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:37.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.585][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:37.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:37.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.590][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:37.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:37.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:37.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:37.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:37.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:37.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:37.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:37.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:37.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:37.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.615][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:37.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:37.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.620][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:37.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:37.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.625][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:37.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:37.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.631][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:37.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:37.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.636][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:37.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:37.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.641][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:37.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:37.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.646][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:37.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:37.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.652][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:37.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:37.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.657][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:37.658][private$selectFields]
biodb.TRACE[2024-12-07 16:03:37.660][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:37.661][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:37.662][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:37.663][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:37.665][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:37.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.667][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.669][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:37.670][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:37.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.672][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.674][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:37.675][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:37.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.678][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.679][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:37.680][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:37.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.683][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.684][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:37.685][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:37.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.688][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.689][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:37.690][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:37.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.693][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.694][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:37.695][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:37.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.698][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.699][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:37.700][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:37.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.702][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.704][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:37.705][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:37.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.708][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.709][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:37.710][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:37.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.713][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.714][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:37.715][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:37.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.718][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.719][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:37.720][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:37.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.723][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.724][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:37.726][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:37.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.728][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.730][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:37.731][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:37.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.733][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.735][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:37.736][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:37.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.739][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.740][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:37.741][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:37.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.744][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.745][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:37.747][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:37.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.750][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.758][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:37.760][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:37.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.762][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.764][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:37.766][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:37.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.769][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.770][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:37.772][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:37.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.774][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.775][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:37.777][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:37.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.779][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.781][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:37.782][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:37.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.784][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.786][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:37.787][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:37.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.790][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.791][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:37.792][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:37.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.795][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.796][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:37.797][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:37.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.800][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.801][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:37.803][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:37.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.805][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.806][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:37.808][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:37.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.810][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.812][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:37.813][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:37.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.816][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.817][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:37.818][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:37.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.821][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.822][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:37.823][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:37.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.826][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.827][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:37.829][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:37.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.831][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.832][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:37.834][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:37.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.836][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.837][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:37.838][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:37.840][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:37.841][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:37.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.843][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.845][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:37.846][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:37.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.849][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.850][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:37.851][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:37.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.854][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.855][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:37.856][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:37.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.858][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.860][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:37.861][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:37.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.863][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.865][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:37.866][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:37.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.868][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.870][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:37.871][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:37.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.873][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.875][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:37.876][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:37.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.878][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.879][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:37.881][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:37.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.883][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.884][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:37.886][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:37.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.888][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.889][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:37.891][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:37.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.893][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.894][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:37.896][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:37.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.898][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.899][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:37.901][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:37.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.903][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.904][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:37.906][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:37.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.908][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.909][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:37.911][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:37.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.913][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.914][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:37.916][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:37.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.918][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.919][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-07 16:03:37.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:37.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:37.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:37.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:37.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:37.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:37.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.936][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:37.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:37.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.941][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:37.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:37.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.946][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:37.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:37.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.951][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:37.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:37.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.956][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:37.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:37.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.962][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:37.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:37.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.967][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:37.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:37.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:37.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:37.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.977][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:37.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:37.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.982][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:37.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:37.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:37.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:37.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.992][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:37.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:37.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:37.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:37.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:37.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:38.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.003][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:38.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:38.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.008][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:38.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:38.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.013][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:38.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:38.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.018][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:38.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:38.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.023][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:38.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:38.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.028][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:38.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:38.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.033][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:38.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:38.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.038][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:38.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:38.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.044][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:38.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:38.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.049][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:38.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:38.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.054][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:38.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:38.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.059][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:38.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:38.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.064][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:38.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:38.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.069][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:38.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:38.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:38.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:38.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:38.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:38.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:38.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:38.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:38.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:38.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:38.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:38.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:38.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:38.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.105][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:38.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:38.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.110][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:38.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:38.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.116][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:38.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:38.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.121][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:38.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:38.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.126][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:38.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:38.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.131][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:38.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:38.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.137][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:38.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:38.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.142][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:38.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:38.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.148][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:38.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:38.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.153][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:38.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:38.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.158][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:38.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:38.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.163][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:38.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:38.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.186][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172414340, N-ethyl-3-methyl-imidazo[4,5-b]pyridine-2-carboxamide, N-ethyl-3-methyl-2-imidazo[4,5-b]pyridinecarboxamide, N-ethyl-3-methylimidazo[4,5-b]pyridine-2-carboxamide, N-ethyl-3-methyl-imidazo[4,5-b]pyridine-2-carboxamide, ...].
biodb.DEBUG[2024-12-07 16:03:38.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:38.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:38.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:38.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:38.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:38.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:38.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:38.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:38.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:38.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:38.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:38.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:38.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:38.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.217][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:38.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:38.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:38.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:38.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.227][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:38.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:38.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.232][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:38.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:38.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.237][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:38.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:38.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.242][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:38.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:38.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.248][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:38.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:38.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:38.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:38.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.258][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:38.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:38.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.263][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:38.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:38.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.268][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:38.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:38.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.273][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:38.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:38.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.278][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:38.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:38.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.283][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:38.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:38.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.288][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:38.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:38.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.293][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:38.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:38.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.298][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:38.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:38.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:38.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:38.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.308][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:38.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:38.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:38.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:38.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:38.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:38.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.323][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:38.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:38.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.328][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:38.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:38.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.334][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:38.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:38.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.339][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:38.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:38.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.344][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:38.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:38.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.349][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:38.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:38.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.354][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:38.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:38.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.359][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:38.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:38.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.364][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:38.365][private$selectFields]
biodb.TRACE[2024-12-07 16:03:38.366][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:38.367][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:38.369][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:38.370][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:38.371][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:38.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.374][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.375][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:38.376][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:38.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.379][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.380][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:38.381][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:38.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.384][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.385][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:38.386][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:38.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.388][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.390][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:38.391][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:38.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.393][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.395][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:38.396][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:38.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.398][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.400][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:38.401][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:38.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.403][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.404][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:38.406][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:38.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.408][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.409][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:38.411][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:38.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.413][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.414][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:38.416][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:38.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.418][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.419][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:38.421][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:38.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.423][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.424][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:38.426][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:38.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.428][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.429][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:38.430][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:38.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.433][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.434][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:38.435][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:38.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.438][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.439][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:38.440][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:38.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.443][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.444][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:38.445][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:38.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.448][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.449][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:38.450][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:38.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.453][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.454][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:38.455][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:38.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.457][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.459][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:38.460][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:38.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.462][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.464][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:38.465][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:38.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.467][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.469][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:38.470][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:38.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.472][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.473][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:38.475][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:38.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.477][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.478][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:38.480][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:38.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.482][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.483][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:38.485][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:38.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.487][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.488][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:38.490][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:38.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.492][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.493][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:38.495][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:38.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.497][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.498][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:38.499][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:38.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.502][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.503][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:38.504][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:38.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.507][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.508][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:38.509][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:38.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.511][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.513][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:38.514][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:38.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.516][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.517][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:38.519][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:38.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.521][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.522][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:38.524][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:38.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.526][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.527][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:38.528][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:38.530][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:38.531][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:38.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.533][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.534][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:38.536][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:38.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.538][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.539][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:38.540][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:38.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.543][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.544][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:38.545][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:38.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.547][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.549][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:38.550][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:38.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.552][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.553][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:38.555][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:38.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.557][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.558][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:38.559][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:38.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.562][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.563][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:38.564][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:38.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.567][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.568][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:38.569][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:38.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.571][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.573][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:38.574][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:38.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.576][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.577][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:38.579][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:38.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.581][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.582][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:38.583][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:38.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.586][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.587][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:38.588][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:38.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.596][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.598][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:38.599][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:38.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.602][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.604][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:38.605][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:38.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.607][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.609][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:38.610][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:38.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.612][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.614][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-07 16:03:38.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:38.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:38.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:38.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:38.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:38.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:38.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:38.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:38.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:38.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:38.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.640][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:38.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:38.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.645][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:38.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:38.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.650][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:38.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:38.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.655][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:38.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:38.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.660][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:38.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:38.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.665][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:38.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:38.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.669][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:38.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:38.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.675][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:38.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:38.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.679][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:38.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:38.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.685][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:38.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:38.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:38.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:38.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.695][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:38.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:38.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:38.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:38.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.705][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:38.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:38.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.710][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:38.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:38.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.715][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:38.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:38.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.720][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:38.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:38.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.726][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:38.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:38.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.730][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:38.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:38.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.736][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:38.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:38.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.741][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:38.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:38.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.746][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:38.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:38.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.751][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:38.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:38.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.756][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:38.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:38.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.761][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:38.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:38.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:38.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:38.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:38.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:38.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:38.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:38.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:38.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:38.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.786][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:38.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:38.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:38.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:38.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.796][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:38.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:38.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.801][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:38.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:38.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.806][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:38.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:38.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.812][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:38.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:38.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:38.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:38.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.821][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:38.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:38.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.827][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:38.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:38.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.832][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:38.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:38.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.837][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:38.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:38.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.842][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:38.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:38.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.847][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:38.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:38.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.852][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:38.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:38.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.868][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172414267, 6-amino-1-isopropyl-pyrido[2,3-d]pyrimidin-4-one, 6-amino-1-propan-2-yl-4-pyrido[2,3-d]pyrimidinone, 6-amino-1-propan-2-ylpyrido[2,3-d]pyrimidin-4-one, 6-azanyl-1-propan-2-yl-pyrido[2,3-d]pyrimidin-4-one, ...].
biodb.DEBUG[2024-12-07 16:03:38.870][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:38.871][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:38.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:38.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:38.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:38.884][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:38.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:38.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:38.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:38.895][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:38.899][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:38.901][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-12-07 16:03:38.903][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:38.904][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-12-07 16:03:38.906][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:38.908][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:38.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:38.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:38.917][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:38.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:38.919][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:38.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:38.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:38.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:38.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:38.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:38.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.932][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:38.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:38.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.937][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:38.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:38.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.942][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:38.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:38.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.947][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:38.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:38.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.952][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:38.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:38.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.956][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:38.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:38.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.961][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:38.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:38.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.966][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:38.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:38.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.971][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:38.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:38.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.976][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:38.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:38.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.981][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:38.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:38.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.986][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:38.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:38.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.991][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:38.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:38.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:38.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:38.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:38.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:38.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.002][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:39.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:39.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.013][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:39.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:39.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.019][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:39.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:39.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.024][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:39.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:39.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:39.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:39.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.034][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:39.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:39.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.049][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:39.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:39.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.054][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:39.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:39.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.059][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:39.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:39.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.064][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:39.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:39.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.069][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:39.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:39.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.074][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:39.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:39.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.079][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:39.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:39.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.084][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:39.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:39.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.089][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:39.090][private$selectFields]
biodb.TRACE[2024-12-07 16:03:39.091][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:39.093][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:39.094][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:39.095][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:39.096][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:39.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.099][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.100][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:39.101][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:39.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.104][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.105][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:39.106][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:39.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.109][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.110][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:39.111][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:39.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.113][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.115][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:39.116][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:39.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.118][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.120][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:39.121][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:39.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.123][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.124][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:39.126][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:39.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.128][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.129][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:39.131][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:39.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.133][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.134][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:39.136][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:39.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.138][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.139][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:39.141][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:39.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.143][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.144][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:39.146][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:39.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.148][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.149][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.151][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.153][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.154][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:39.156][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:39.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.158][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.159][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:39.160][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:39.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.163][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.164][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:39.165][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:39.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.168][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.169][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:39.170][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:39.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.173][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.174][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:39.175][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:39.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.178][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.179][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:39.180][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:39.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.183][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.184][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:39.185][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:39.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.188][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.189][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:39.190][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:39.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.193][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.194][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:39.195][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:39.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.197][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.199][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:39.200][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:39.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.202][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.204][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:39.205][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:39.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.207][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.208][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:39.210][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:39.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.212][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.213][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:39.215][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:39.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.217][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.218][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:39.220][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:39.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.222][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.223][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:39.224][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:39.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.227][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.228][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.229][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.232][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.233][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:39.234][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:39.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.236][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.238][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:39.239][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:39.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.241][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.242][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:39.244][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:39.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.246][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.247][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:39.249][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:39.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.251][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.252][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-12-07 16:03:39.254][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-12-07 16:03:39.255][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:39.256][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:39.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.258][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.260][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:39.261][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:39.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.263][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.264][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:39.266][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:39.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.268][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.269][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:39.271][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:39.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.273][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.274][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:39.275][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:39.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.278][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.279][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:39.280][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:39.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.283][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.284][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:39.285][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:39.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.288][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.289][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:39.290][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:39.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.292][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.294][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:39.295][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:39.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.297][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.298][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:39.300][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:39.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.302][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.303][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.304][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.307][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.308][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:39.309][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:39.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.312][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.313][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:39.314][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:39.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.317][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.318][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:39.319][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:39.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.321][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.323][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:39.324][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:39.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.326][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.328][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-07 16:03:39.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:39.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:39.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:39.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:39.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:39.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:39.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.344][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:39.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:39.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.349][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:39.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:39.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.354][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:39.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:39.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:39.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:39.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.364][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:39.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:39.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:39.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:39.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.374][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:39.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:39.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.379][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:39.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:39.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.384][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:39.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:39.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.389][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:39.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:39.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.394][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:39.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:39.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.399][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:39.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:39.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.404][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:39.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:39.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:39.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:39.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.414][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:39.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:39.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.425][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:39.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:39.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.431][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:39.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:39.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.436][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:39.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:39.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.441][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:39.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:39.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.446][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:39.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:39.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:39.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:39.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.456][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:39.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:39.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:39.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:39.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.466][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:39.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:39.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:39.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:39.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:39.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:39.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:39.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:39.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.487][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.502][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:39.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:39.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.507][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:39.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:39.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.512][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:39.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:39.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.517][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:39.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:39.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.522][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:39.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:39.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.527][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:39.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:39.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.532][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:39.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:39.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.537][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:39.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:39.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.542][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:39.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:39.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.547][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:39.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:39.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.552][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:39.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:39.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.557][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:39.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:39.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.573][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172419784, dimethyl-[(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)methyl]-vinyl-silane, ethenyl-dimethyl-[(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)methyl]silane, ethenyl-dimethyl-[(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)methyl]silane, ethenyl-dimethyl-[(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)methyl]silane, ...].
biodb.DEBUG[2024-12-07 16:03:39.574][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:39.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:39.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:39.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:39.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:39.585][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:39.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:39.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:39.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:39.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:39.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:39.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:39.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:39.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.602][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:39.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:39.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:39.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:39.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:39.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:39.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:39.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:39.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.622][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:39.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:39.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.627][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:39.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:39.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:39.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:39.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.637][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:39.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:39.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.642][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:39.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:39.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.647][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:39.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:39.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.652][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:39.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:39.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.657][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:39.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:39.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.661][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:39.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:39.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.666][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:39.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:39.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.671][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:39.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:39.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.676][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:39.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:39.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.681][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:39.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:39.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:39.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:39.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:39.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:39.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.706][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:39.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:39.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.711][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:39.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:39.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.715][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:39.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:39.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.720][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:39.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:39.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.725][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:39.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:39.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.730][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:39.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:39.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.735][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:39.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:39.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.740][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:39.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:39.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.745][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:39.746][private$selectFields]
biodb.TRACE[2024-12-07 16:03:39.747][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:39.748][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:39.750][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:39.751][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:39.752][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:39.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.755][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.756][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:39.757][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:39.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.759][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.761][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:39.762][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:39.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.764][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.765][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:39.767][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:39.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.769][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.770][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:39.772][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:39.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.774][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.775][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:39.776][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:39.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.779][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.780][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:39.781][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:39.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.784][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.785][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:39.786][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:39.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.788][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.790][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:39.791][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:39.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.793][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.795][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:39.796][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:39.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.798][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.799][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:39.801][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:39.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.803][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.804][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.806][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.808][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.809][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:39.810][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:39.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.813][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.814][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:39.815][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:39.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.818][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.819][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:39.820][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:39.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.823][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.824][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:39.825][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:39.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.833][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.835][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:39.836][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:39.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.839][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.841][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:39.842][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:39.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.845][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.846][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:39.847][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:39.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.850][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.851][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:39.852][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:39.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.855][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.856][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:39.857][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:39.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.860][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.861][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:39.862][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:39.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.864][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.866][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:39.867][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:39.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.869][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.870][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:39.872][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:39.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.874][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.875][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:39.877][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:39.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.879][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.880][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:39.882][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:39.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.884][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.885][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:39.887][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:39.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.889][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.890][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.892][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.894][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.895][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:39.897][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:39.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.899][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.900][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:39.902][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:39.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.904][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.905][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:39.907][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:39.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.909][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.910][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:39.912][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:39.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.914][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.915][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:39.917][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:39.918][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:39.919][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:39.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.922][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.923][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:39.924][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:39.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.927][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.928][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:39.929][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:39.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.931][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.933][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:39.934][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:39.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.936][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.938][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:39.939][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:39.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.941][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.943][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:39.944][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:39.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.946][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.948][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:39.949][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:39.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.951][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.953][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:39.954][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:39.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.956][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.957][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:39.959][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:39.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.961][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.962][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:39.964][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:39.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.966][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.967][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:39.969][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:39.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.971][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.972][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.974][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:39.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.976][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.977][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:39.979][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:39.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.981][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.982][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:39.983][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:39.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.986][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.987][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:39.988][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:39.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.991][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.992][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:39.993][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:39.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:39.996][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:39.997][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-07 16:03:39.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:40.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:40.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:40.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:40.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:40.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:40.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.013][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:40.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:40.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.018][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:40.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:40.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.023][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:40.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:40.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.029][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:40.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:40.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.034][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:40.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:40.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.039][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:40.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:40.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.044][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:40.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:40.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:40.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:40.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:40.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:40.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.059][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:40.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:40.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:40.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:40.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.069][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:40.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:40.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.074][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:40.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:40.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.079][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:40.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:40.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.084][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:40.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:40.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.089][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:40.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:40.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.094][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:40.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:40.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.099][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:40.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:40.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.104][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:40.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:40.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.109][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:40.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:40.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.114][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:40.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:40.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.119][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:40.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:40.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.124][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:40.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:40.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.129][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:40.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:40.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.134][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:40.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:40.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.139][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:40.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:40.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.145][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:40.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:40.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:40.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:40.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:40.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:40.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:40.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:40.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:40.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:40.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:40.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:40.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:40.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:40.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.180][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:40.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:40.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.185][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:40.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:40.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.190][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:40.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:40.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.195][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:40.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:40.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.200][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:40.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:40.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.205][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:40.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:40.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.210][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:40.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:40.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.215][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:40.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:40.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.220][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:40.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:40.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.225][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:40.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:40.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.230][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:40.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:40.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.235][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:40.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:40.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.259][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172416823, 2-[3-(4-fluorophenyl)oxetan-3-yl]oxyacetic acid, 2-[[3-(4-fluorophenyl)-3-oxetanyl]oxy]acetic acid, 2-[3-(4-fluorophenyl)oxetan-3-yl]oxyacetic acid, 2-[3-(4-fluorophenyl)oxetan-3-yl]oxyethanoic acid, ...].
biodb.DEBUG[2024-12-07 16:03:40.260][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:40.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:40.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:40.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:40.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:40.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:40.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:40.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:40.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:40.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:40.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:40.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.284][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:40.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:40.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.289][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:40.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:40.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.294][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:40.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:40.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.299][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:40.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:40.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.304][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:40.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:40.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.309][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:40.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:40.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.314][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:40.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:40.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.318][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:40.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:40.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.323][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:40.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:40.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.328][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:40.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:40.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.333][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:40.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:40.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.338][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:40.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:40.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.342][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:40.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:40.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.347][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:40.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:40.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.352][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:40.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:40.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.357][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:40.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:40.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.362][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:40.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:40.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.367][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:40.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:40.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:40.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:40.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:40.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:40.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.382][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:40.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:40.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:40.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:40.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.392][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:40.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:40.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.397][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:40.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:40.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.402][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:40.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:40.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.407][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:40.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:40.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.411][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:40.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:40.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.416][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:40.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:40.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.421][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:40.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:40.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.426][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:40.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:40.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.431][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:40.432][private$selectFields]
biodb.TRACE[2024-12-07 16:03:40.433][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:40.435][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:40.436][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:40.437][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:40.438][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:40.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.441][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.442][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:40.443][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:40.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.446][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.447][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:40.448][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:40.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.450][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.452][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:40.453][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:40.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.455][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.457][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:40.458][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:40.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.460][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.461][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:40.463][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:40.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.465][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.466][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:40.468][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:40.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.470][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.471][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:40.472][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:40.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.475][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.476][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:40.477][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:40.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.480][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.481][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:40.482][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:40.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.485][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.486][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:40.487][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:40.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.489][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.491][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:40.492][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:40.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.494][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.495][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:40.497][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:40.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.499][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.500][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:40.502][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:40.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.504][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.505][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:40.506][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:40.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.509][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.510][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:40.511][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:40.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.514][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.515][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:40.516][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:40.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.518][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.520][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:40.521][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:40.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.523][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.525][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:40.526][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:40.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.528][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.529][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:40.531][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:40.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.533][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.534][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:40.536][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:40.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.538][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.539][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:40.540][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:40.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.543][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.544][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:40.545][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:40.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.548][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.549][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:40.550][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:40.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.552][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.554][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:40.555][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:40.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.557][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.558][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:40.560][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:40.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.562][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.563][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:40.565][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:40.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.567][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.568][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:40.569][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:40.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.572][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.573][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:40.574][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:40.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.577][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.578][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:40.579][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:40.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.581][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.583][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:40.584][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:40.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.586][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.588][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:40.589][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:40.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.591][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.592][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:40.594][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:40.595][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:40.596][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:40.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.599][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.600][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:40.601][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:40.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.603][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.605][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:40.606][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:40.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.608][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.609][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:40.611][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:40.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.613][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.614][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:40.616][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:40.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.618][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.619][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:40.621][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:40.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.623][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.624][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:40.625][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:40.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.628][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.629][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:40.630][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:40.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.633][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.634][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:40.635][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:40.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.638][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.639][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:40.640][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:40.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.642][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.644][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:40.645][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:40.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.648][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.655][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:40.657][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:40.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.659][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.661][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:40.662][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:40.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.665][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.666][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:40.667][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:40.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.670][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.671][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:40.672][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:40.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.675][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.676][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:40.677][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:40.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.680][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.681][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-07 16:03:40.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:40.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:40.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:40.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:40.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:40.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:40.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.698][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:40.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:40.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.703][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:40.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:40.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.708][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:40.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:40.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:40.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:40.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.719][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:40.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:40.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:40.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:40.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:40.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:40.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.735][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:40.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:40.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.740][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:40.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:40.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.745][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:40.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:40.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.750][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:40.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:40.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.755][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:40.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:40.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:40.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:40.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.765][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:40.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:40.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.769][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:40.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:40.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.775][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:40.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:40.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.780][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:40.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:40.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.784][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:40.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:40.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.790][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:40.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:40.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.795][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:40.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:40.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.799][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:40.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:40.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:40.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:40.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.810][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:40.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:40.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.814][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:40.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:40.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.820][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:40.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:40.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.824][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:40.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:40.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.829][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:40.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:40.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:40.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:40.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:40.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:40.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.844][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:40.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:40.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:40.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:40.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.854][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:40.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:40.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:40.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:40.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.864][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:40.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:40.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.869][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:40.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:40.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.874][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:40.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:40.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.879][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:40.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:40.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.884][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:40.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:40.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.889][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:40.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:40.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.894][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:40.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:40.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.899][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:40.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:40.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.904][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:40.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:40.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.909][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:40.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:40.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.914][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:40.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:40.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.919][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:40.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:40.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:40.936][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172416819, 2-[3-(3-fluorophenyl)oxetan-3-yl]oxyacetic acid, 2-[[3-(3-fluorophenyl)-3-oxetanyl]oxy]acetic acid, 2-[3-(3-fluorophenyl)oxetan-3-yl]oxyacetic acid, 2-[3-(3-fluorophenyl)oxetan-3-yl]oxyethanoic acid, ...].
biodb.DEBUG[2024-12-07 16:03:40.937][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:40.938][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:40.949][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:40.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:40.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:40.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:40.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:40.960][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:40.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:40.970][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:40.974][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:40.975][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-12-07 16:03:40.977][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:40.978][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-12-07 16:03:40.981][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:40.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:40.984][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:40.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:40.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:40.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:40.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:40.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:40.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:40.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:40.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:40.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:41.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:41.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.005][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:41.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:41.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.010][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:41.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:41.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.015][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:41.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:41.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:41.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:41.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.025][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:41.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:41.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.030][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:41.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:41.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.035][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:41.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:41.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.040][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:41.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:41.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.045][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:41.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:41.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.050][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:41.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:41.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.055][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:41.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:41.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.060][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:41.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:41.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.071][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:41.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:41.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.077][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:41.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:41.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.082][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:41.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:41.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.087][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:41.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:41.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.092][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:41.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:41.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.097][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:41.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:41.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:41.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:41.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:41.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:41.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:41.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:41.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:41.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:41.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.122][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:41.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:41.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.127][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:41.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:41.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.132][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:41.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:41.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.137][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:41.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:41.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.142][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:41.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:41.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.147][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:41.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:41.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.152][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:41.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:41.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.157][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:41.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:41.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.162][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:41.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:41.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.167][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:41.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:41.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.172][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:41.174][private$selectFields]
biodb.TRACE[2024-12-07 16:03:41.175][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:41.176][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:41.177][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:41.178][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:41.180][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:41.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.182][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.183][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:41.185][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:41.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.187][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.188][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:41.190][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:41.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.192][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.193][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:41.195][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:41.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.197][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.198][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:41.200][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:41.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.202][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.203][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:41.205][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:41.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.207][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.208][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:41.209][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:41.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.212][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.213][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:41.214][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:41.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.217][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.218][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:41.219][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:41.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.222][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.223][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:41.224][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:41.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.226][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.228][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:41.229][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:41.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.231][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.232][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:41.234][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:41.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.236][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.237][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:41.239][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:41.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.241][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.242][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:41.243][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:41.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.246][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.247][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:41.248][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:41.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.251][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.252][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:41.253][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:41.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.256][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.257][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:41.258][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:41.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.260][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.262][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:41.263][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:41.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.265][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.266][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:41.268][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:41.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.270][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.271][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:41.273][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:41.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.275][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.276][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:41.277][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:41.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.280][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.281][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:41.282][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:41.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.285][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.286][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:41.287][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:41.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.289][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.291][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:41.292][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:41.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.294][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.295][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:41.297][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:41.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.299][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.300][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:41.302][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:41.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.304][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.305][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:41.307][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:41.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.309][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.310][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:41.311][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:41.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.314][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.315][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:41.316][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:41.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.319][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.320][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:41.321][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:41.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.323][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.325][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:41.326][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:41.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.328][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.329][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:41.331][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:41.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.333][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.334][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:41.336][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:41.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.338][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.339][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:41.340][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:41.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.343][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.344][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:41.345][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:41.346][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:41.348][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:41.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.350][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.351][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:41.353][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:41.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.355][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.356][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:41.357][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:41.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.360][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.361][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:41.362][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:41.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.364][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.366][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:41.367][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:41.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.369][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.370][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:41.372][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:41.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.374][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.375][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:41.377][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:41.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.379][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.380][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:41.381][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:41.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.384][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.385][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:41.386][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:41.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.389][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.390][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:41.391][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:41.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.393][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.395][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:41.396][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:41.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.398][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.399][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:41.401][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:41.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.403][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.404][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:41.406][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:41.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.408][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.409][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:41.410][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:41.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.413][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.414][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:41.415][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:41.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.417][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.419][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:41.420][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:41.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.422][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.424][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-07 16:03:41.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:41.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:41.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:41.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:41.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:41.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:41.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:41.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:41.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.445][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:41.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:41.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:41.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:41.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:41.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:41.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.460][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:41.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:41.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:41.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:41.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.470][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:41.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:41.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.481][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:41.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:41.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.487][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:41.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:41.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:41.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:41.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.497][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:41.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:41.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.502][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:41.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:41.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.507][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:41.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:41.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.512][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:41.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:41.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:41.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:41.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.522][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:41.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:41.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.527][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:41.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:41.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.532][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:41.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:41.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.537][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:41.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:41.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.542][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:41.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:41.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.547][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:41.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:41.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.552][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:41.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:41.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.557][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:41.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:41.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.562][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:41.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:41.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.567][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:41.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:41.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.572][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:41.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:41.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.577][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:41.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:41.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.582][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:41.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:41.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.587][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:41.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:41.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:41.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:41.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:41.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:41.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:41.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:41.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:41.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:41.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.612][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:41.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:41.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.617][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:41.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:41.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.622][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:41.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:41.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.627][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:41.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:41.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.632][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:41.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:41.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.637][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:41.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:41.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.642][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:41.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:41.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.647][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:41.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:41.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.652][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:41.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:41.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.657][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:41.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:41.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.662][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:41.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:41.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.667][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:41.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:41.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.683][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172417118, 2-(2-pyrazol-1-ylethoxy)pyridin-3-amine, 2-[2-(1-pyrazolyl)ethoxy]-3-pyridinamine, 2-(2-pyrazol-1-ylethoxy)pyridin-3-amine, 2-(2-pyrazol-1-ylethoxy)pyridin-3-amine, ...].
biodb.DEBUG[2024-12-07 16:03:41.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:41.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:41.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:41.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:41.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:41.695][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:41.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:41.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:41.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:41.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:41.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:41.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.707][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:41.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:41.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.712][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:41.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:41.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:41.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:41.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.722][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:41.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:41.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.727][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:41.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:41.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.732][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:41.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:41.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.737][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:41.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:41.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.742][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:41.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:41.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.746][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:41.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:41.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.751][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:41.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:41.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.756][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:41.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:41.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.761][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:41.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:41.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.766][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:41.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:41.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.771][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:41.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:41.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.776][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:41.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:41.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:41.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:41.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.786][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:41.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:41.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.791][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:41.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:41.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:41.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:41.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:41.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:41.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:41.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:41.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:41.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:41.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.815][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:41.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:41.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.820][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:41.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:41.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.825][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:41.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:41.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.830][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:41.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:41.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.835][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:41.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:41.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.840][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:41.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:41.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.845][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:41.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:41.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.850][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:41.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:41.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.855][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:41.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:41.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.860][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:41.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:41.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.865][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:41.866][private$selectFields]
biodb.TRACE[2024-12-07 16:03:41.867][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:41.869][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:41.870][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:41.871][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:41.872][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:41.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.875][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.876][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:41.877][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:41.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.886][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.887][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:41.889][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:41.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.892][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.893][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:41.895][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:41.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.897][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.898][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:41.900][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:41.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.902][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.903][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:41.905][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:41.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.907][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.908][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:41.910][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:41.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.912][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.913][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:41.915][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:41.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.917][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.918][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:41.920][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:41.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.922][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.923][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:41.924][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:41.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.927][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.928][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:41.929][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:41.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.932][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.933][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:41.934][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:41.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.936][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.938][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:41.939][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:41.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.941][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.943][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:41.944][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:41.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.946][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.948][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:41.949][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:41.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.951][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.952][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:41.954][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:41.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.956][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.957][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:41.959][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:41.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.961][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.962][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:41.964][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:41.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.966][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.967][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:41.968][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:41.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.971][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.972][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:41.973][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:41.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.976][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.977][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:41.978][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:41.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.980][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.982][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:41.983][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:41.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.985][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.987][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:41.988][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:41.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.990][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.991][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:41.993][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:41.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:41.995][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:41.996][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:41.997][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:41.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.000][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.001][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:42.002][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:42.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.005][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.006][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:42.007][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:42.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.010][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.011][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:42.012][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:42.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.015][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.016][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.017][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.020][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.021][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:42.022][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:42.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.025][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.026][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:42.027][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:42.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.029][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.031][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:42.032][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:42.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.034][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.035][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:42.037][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:42.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.039][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.040][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:42.042][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:42.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.044][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.045][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:42.046][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:42.048][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:42.049][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:42.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.051][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.052][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:42.054][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:42.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.056][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.057][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:42.059][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:42.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.061][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.062][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:42.063][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:42.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.066][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.067][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:42.068][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:42.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.070][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.072][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:42.073][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:42.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.075][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.076][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:42.078][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:42.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.080][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.081][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:42.083][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:42.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.085][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.086][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:42.087][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:42.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.090][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.091][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:42.092][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:42.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.095][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.096][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:42.097][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:42.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.099][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.101][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.102][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.104][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.105][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:42.107][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:42.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.109][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.110][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:42.112][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:42.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.114][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.115][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:42.116][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:42.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.119][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.120][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:42.121][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:42.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.124][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.125][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-07 16:03:42.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:42.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:42.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:42.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:42.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:42.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:42.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.141][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:42.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:42.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:42.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:42.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:42.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:42.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.156][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:42.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:42.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.161][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:42.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:42.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.166][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:42.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:42.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:42.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:42.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.176][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:42.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:42.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.181][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:42.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:42.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.186][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:42.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:42.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.191][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:42.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:42.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.196][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:42.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:42.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.201][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:42.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:42.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:42.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:42.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:42.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:42.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.216][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:42.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:42.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.221][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:42.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:42.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.226][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:42.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:42.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:42.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:42.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.236][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:42.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:42.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.241][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:42.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:42.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.246][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:42.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:42.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.251][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:42.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:42.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.256][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:42.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:42.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.261][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:42.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:42.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.266][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:42.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:42.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.271][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:42.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:42.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.276][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:42.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:42.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.281][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:42.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:42.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.286][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:42.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:42.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.314][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:42.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:42.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.319][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:42.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:42.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.324][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:42.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:42.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.329][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:42.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:42.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.334][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:42.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:42.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.339][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:42.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:42.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.345][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:42.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:42.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.350][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:42.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:42.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.355][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:42.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:42.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.361][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:42.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:42.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.366][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:42.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:42.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.371][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:42.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:42.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.388][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172414340, N-ethyl-3-methyl-imidazo[4,5-b]pyridine-2-carboxamide, N-ethyl-3-methyl-2-imidazo[4,5-b]pyridinecarboxamide, N-ethyl-3-methylimidazo[4,5-b]pyridine-2-carboxamide, N-ethyl-3-methyl-imidazo[4,5-b]pyridine-2-carboxamide, ...].
biodb.DEBUG[2024-12-07 16:03:42.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:42.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:42.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:42.398][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:42.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:42.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:42.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:42.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:42.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:42.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:42.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:42.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:42.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:42.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.418][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:42.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:42.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.422][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:42.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:42.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:42.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:42.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.432][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:42.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:42.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.437][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:42.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:42.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.442][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:42.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:42.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:42.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:42.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.452][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:42.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:42.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.457][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:42.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:42.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.462][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:42.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:42.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.467][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:42.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:42.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.472][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:42.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:42.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.477][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:42.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:42.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.482][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:42.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:42.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:42.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:42.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.492][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:42.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:42.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.497][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:42.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:42.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:42.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:42.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:42.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:42.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.511][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.521][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:42.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:42.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.526][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:42.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:42.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.531][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:42.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:42.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.536][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:42.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:42.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.541][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:42.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:42.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.546][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:42.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:42.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.550][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:42.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:42.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.555][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:42.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:42.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.560][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:42.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:42.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.565][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:42.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:42.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.570][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:42.571][private$selectFields]
biodb.TRACE[2024-12-07 16:03:42.572][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:42.573][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:42.575][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:42.576][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:42.577][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:42.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.579][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.581][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:42.582][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:42.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.584][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.586][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:42.587][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:42.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.589][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.590][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:42.592][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:42.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.594][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.595][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:42.596][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:42.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.599][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.600][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:42.601][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:42.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.604][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.605][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:42.606][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:42.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.608][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.610][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:42.611][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:42.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.613][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.614][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:42.616][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:42.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.618][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.619][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:42.620][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:42.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.623][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.624][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:42.625][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:42.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.628][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.629][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.630][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.632][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.633][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:42.635][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:42.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.637][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.638][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:42.640][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:42.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.642][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.643][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:42.644][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:42.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.647][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.648][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:42.649][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:42.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.652][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.653][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:42.654][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:42.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.656][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.658][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:42.659][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:42.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.661][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.662][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:42.664][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:42.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.666][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.667][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:42.669][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:42.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.671][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.672][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:42.673][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:42.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.676][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.677][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:42.678][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:42.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.681][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.682][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:42.683][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:42.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.685][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.687][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:42.688][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:42.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.690][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.691][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:42.693][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:42.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.701][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.702][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:42.704][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:42.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.707][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.708][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:42.709][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:42.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.712][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.713][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:42.714][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:42.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.717][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.718][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.719][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.722][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.723][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:42.724][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:42.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.726][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.728][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:42.729][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:42.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.731][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.732][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:42.734][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:42.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.736][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.737][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:42.739][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:42.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.741][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.742][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:42.743][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:42.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.746][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.747][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:42.748][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:42.749][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:42.751][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:42.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.753][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.754][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:42.756][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:42.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.758][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.759][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:42.761][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:42.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.763][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.764][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:42.766][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:42.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.768][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.769][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:42.771][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:42.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.773][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.774][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:42.776][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:42.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.778][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.779][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:42.781][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:42.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.783][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.784][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:42.786][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:42.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.788][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.789][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:42.791][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:42.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.793][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.794][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:42.796][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:42.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.798][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.799][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:42.801][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:42.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.803][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.804][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.806][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:42.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.808][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.809][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:42.810][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:42.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.813][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.814][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:42.815][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:42.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.818][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.819][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:42.820][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:42.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.823][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.824][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:42.825][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:42.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.828][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.829][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-07 16:03:42.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:42.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:42.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:42.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:42.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:42.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:42.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.846][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:42.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:42.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:42.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:42.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.857][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:42.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:42.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:42.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:42.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:42.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:42.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:42.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:42.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.878][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:42.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:42.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.883][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:42.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:42.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:42.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:42.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.893][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:42.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:42.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:42.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:42.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.903][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:42.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:42.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:42.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:42.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.914][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:42.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:42.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:42.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:42.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.925][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:42.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:42.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.930][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:42.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:42.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.935][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:42.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:42.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.940][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:42.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:42.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:42.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:42.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.950][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:42.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:42.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:42.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:42.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.960][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:42.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:42.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.965][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:42.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:42.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.971][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:42.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:42.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.976][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:42.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:42.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.981][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:42.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:42.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:42.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:42.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:42.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:42.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:42.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:42.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:42.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:42.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:43.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:43.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:43.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:43.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:43.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:43.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.017][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:43.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:43.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.022][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:43.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:43.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.027][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:43.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:43.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.032][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:43.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:43.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.037][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:43.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:43.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.042][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:43.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:43.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.048][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:43.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:43.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.053][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:43.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:43.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.058][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:43.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:43.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.063][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:43.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:43.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.068][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:43.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:43.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.073][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:43.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:43.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.089][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172414267, 6-amino-1-isopropyl-pyrido[2,3-d]pyrimidin-4-one, 6-amino-1-propan-2-yl-4-pyrido[2,3-d]pyrimidinone, 6-amino-1-propan-2-ylpyrido[2,3-d]pyrimidin-4-one, 6-azanyl-1-propan-2-yl-pyrido[2,3-d]pyrimidin-4-one, ...].
biodb.DEBUG[2024-12-07 16:03:43.091][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:43.092][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:43.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:43.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:43.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:43.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:43.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:43.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:43.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:43.124][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:43.128][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:43.130][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-12-07 16:03:43.131][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:43.133][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-12-07 16:03:43.135][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:43.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:43.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:43.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:43.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:43.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:43.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:43.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:43.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:43.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:43.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:43.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:43.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.161][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:43.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:43.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.166][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:43.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:43.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:43.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:43.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.176][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:43.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:43.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.181][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:43.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:43.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.186][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:43.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:43.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.191][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:43.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:43.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.196][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:43.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:43.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.201][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:43.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:43.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:43.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:43.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.211][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:43.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:43.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.216][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:43.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:43.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.221][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:43.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:43.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.226][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:43.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:43.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:43.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:43.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.236][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:43.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:43.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.241][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:43.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:43.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.246][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:43.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:43.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.251][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:43.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:43.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:43.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:43.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:43.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:43.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:43.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:43.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.272][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:43.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:43.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.277][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:43.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:43.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.283][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:43.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:43.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.288][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:43.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:43.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.293][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:43.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:43.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.298][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:43.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:43.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.303][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:43.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:43.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.308][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:43.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:43.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.313][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:43.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:43.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.318][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:43.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:43.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.323][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:43.325][private$selectFields]
biodb.TRACE[2024-12-07 16:03:43.326][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:43.327][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:43.328][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:43.330][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:43.331][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:43.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.333][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.334][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:43.336][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:43.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.338][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.339][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:43.341][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:43.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.343][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.344][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:43.346][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:43.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.348][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.349][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:43.351][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:43.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.353][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.354][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:43.356][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:43.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.358][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.359][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:43.361][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:43.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.363][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.365][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:43.366][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:43.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.368][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.370][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:43.371][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:43.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.373][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.375][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:43.376][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:43.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.378][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.380][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:43.381][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:43.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.383][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.384][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:43.386][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:43.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.388][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.389][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:43.391][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:43.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.393][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.394][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:43.396][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:43.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.398][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.399][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:43.401][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:43.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.403][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.404][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:43.406][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:43.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.408][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.409][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:43.411][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:43.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.413][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.414][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:43.415][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:43.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.418][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.419][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:43.420][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:43.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.423][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.424][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:43.425][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:43.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.428][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.429][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:43.430][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:43.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.432][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.434][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:43.435][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:43.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.437][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.439][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:43.440][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:43.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.442][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.443][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:43.445][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:43.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.447][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.448][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:43.450][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:43.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.452][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.453][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:43.454][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:43.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.457][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.458][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:43.459][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:43.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.462][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.463][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:43.464][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:43.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.467][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.468][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:43.469][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:43.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.471][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.473][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:43.474][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:43.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.476][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.477][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:43.479][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:43.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.481][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.482][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:43.484][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:43.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.486][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.487][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:43.488][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:43.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.491][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.492][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:43.493][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:43.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.496][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.497][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-12-07 16:03:43.498][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-12-07 16:03:43.499][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:43.501][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:43.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.503][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.504][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:43.505][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:43.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.508][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.509][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:43.510][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:43.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.513][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.514][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:43.515][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:43.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.518][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.519][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:43.520][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:43.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.522][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.524][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:43.525][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:43.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.534][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.535][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:43.537][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:43.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.539][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.541][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:43.542][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:43.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.545][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.546][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:43.547][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:43.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.550][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.551][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:43.552][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:43.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.555][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.556][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:43.557][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:43.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.560][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.561][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:43.562][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:43.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.564][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.566][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:43.567][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:43.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.569][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.570][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:43.572][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:43.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.574][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.575][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:43.577][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:43.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.579][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.580][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-07 16:03:43.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:43.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:43.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:43.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:43.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:43.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:43.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:43.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:43.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.602][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:43.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:43.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:43.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:43.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:43.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:43.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:43.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:43.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.622][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:43.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:43.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.627][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:43.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:43.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:43.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:43.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.637][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:43.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:43.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.643][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:43.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:43.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.648][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:43.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:43.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.653][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:43.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:43.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:43.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:43.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.663][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:43.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:43.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.668][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:43.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:43.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.673][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:43.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:43.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.678][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:43.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:43.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.683][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:43.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:43.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.689][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:43.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:43.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.694][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:43.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:43.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.699][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:43.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:43.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.704][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:43.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:43.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.709][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:43.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:43.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.714][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:43.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:43.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:43.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:43.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.724][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:43.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:43.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:43.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:43.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:43.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:43.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:43.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:43.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:43.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:43.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.750][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:43.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:43.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.755][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:43.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:43.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.760][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:43.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:43.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.765][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:43.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:43.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.770][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:43.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:43.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.776][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:43.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:43.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.781][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:43.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:43.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.786][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:43.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:43.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.791][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:43.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:43.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.796][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:43.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:43.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.801][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:43.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:43.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.806][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:43.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:43.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.822][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172419784, dimethyl-[(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)methyl]-vinyl-silane, ethenyl-dimethyl-[(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)methyl]silane, ethenyl-dimethyl-[(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)methyl]silane, ethenyl-dimethyl-[(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)methyl]silane, ...].
biodb.DEBUG[2024-12-07 16:03:43.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:43.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:43.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:43.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:43.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:43.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:43.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:43.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:43.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:43.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:43.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:43.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.847][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:43.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:43.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:43.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:43.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.857][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:43.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:43.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:43.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:43.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:43.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:43.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:43.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:43.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:43.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:43.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.883][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:43.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:43.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:43.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:43.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.893][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:43.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:43.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.898][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:43.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:43.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.903][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:43.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:43.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.908][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:43.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:43.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.913][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:43.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:43.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.918][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:43.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:43.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.923][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:43.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:43.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.928][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:43.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:43.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.933][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:43.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:43.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.938][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:43.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:43.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:43.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:43.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:43.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:43.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:43.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:43.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.966][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:43.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:43.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.971][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:43.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:43.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.976][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:43.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:43.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.981][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:43.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:43.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.986][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:43.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:43.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.991][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:43.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:43.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:43.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:43.997][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:43.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:43.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.002][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:44.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:44.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.007][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:44.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:44.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.012][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:44.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:44.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.017][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:44.018][private$selectFields]
biodb.TRACE[2024-12-07 16:03:44.020][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:44.021][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:44.022][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:44.023][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:44.025][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:44.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.027][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.028][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:44.030][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:44.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.032][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.033][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:44.035][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:44.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.037][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.038][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:44.040][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:44.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.042][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.043][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:44.045][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:44.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.047][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.048][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:44.050][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:44.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.052][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.053][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:44.054][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:44.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.057][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.058][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:44.059][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:44.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.062][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.063][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:44.064][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:44.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.067][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.068][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:44.069][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:44.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.072][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.073][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:44.074][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:44.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.076][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.078][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:44.079][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:44.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.081][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.083][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:44.084][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:44.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.086][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.088][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:44.089][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:44.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.091][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.093][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:44.094][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:44.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.096][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.097][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:44.099][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:44.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.101][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.102][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:44.104][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:44.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.106][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.107][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:44.109][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:44.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.111][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.112][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:44.114][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:44.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.116][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.117][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:44.119][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:44.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.121][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.122][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:44.124][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:44.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.126][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.127][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:44.129][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:44.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.131][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.132][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:44.133][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:44.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.136][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.137][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:44.138][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:44.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.141][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.142][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:44.143][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:44.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.146][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.147][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:44.148][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:44.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.151][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.152][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:44.153][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:44.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.155][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.157][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:44.158][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:44.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.160][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.162][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:44.163][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:44.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.165][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.167][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:44.168][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:44.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.170][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.171][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:44.173][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:44.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.175][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.176][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:44.178][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:44.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.180][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.181][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:44.183][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:44.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.185][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.186][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:44.188][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:44.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.190][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.191][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:44.192][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:44.194][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:44.195][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:44.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.198][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.199][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:44.200][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:44.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.203][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.204][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:44.205][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:44.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.207][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.209][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:44.210][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:44.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.212][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.213][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:44.215][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:44.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.217][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.218][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:44.220][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:44.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.222][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.223][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:44.224][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:44.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.227][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.228][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:44.229][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:44.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.232][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.233][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:44.234][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:44.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.236][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.238][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:44.239][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:44.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.241][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.242][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:44.244][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:44.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.246][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.247][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:44.249][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:44.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.251][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.252][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:44.253][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:44.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.256][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.257][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:44.258][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:44.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.261][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.262][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:44.263][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:44.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.265][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.267][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:44.268][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:44.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.270][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.272][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-07 16:03:44.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:44.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:44.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:44.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:44.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:44.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:44.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:44.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:44.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.293][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:44.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:44.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.298][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:44.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:44.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.303][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:44.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:44.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:44.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:44.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.313][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:44.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:44.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.318][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:44.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:44.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.323][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:44.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:44.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.327][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:44.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:44.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.332][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:44.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:44.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.337][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:44.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:44.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.342][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:44.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:44.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.347][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:44.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:44.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.381][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:44.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:44.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.387][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:44.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:44.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.392][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:44.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:44.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.397][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:44.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:44.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.402][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:44.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:44.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:44.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:44.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.412][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:44.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:44.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.417][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:44.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:44.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.422][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:44.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:44.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.427][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:44.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:44.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:44.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:44.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.438][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:44.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:44.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.443][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:44.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:44.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.448][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:44.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:44.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.453][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:44.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:44.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:44.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:44.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.463][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:44.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:44.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:44.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:44.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:44.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:44.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:44.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:44.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.483][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:44.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:44.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.488][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:44.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:44.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.493][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:44.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:44.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.498][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:44.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:44.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.503][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:44.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:44.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.508][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:44.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:44.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.513][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:44.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:44.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.518][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:44.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:44.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.523][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:44.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:44.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.528][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:44.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:44.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.533][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:44.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:44.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.538][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:44.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:44.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.554][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172416823, 2-[3-(4-fluorophenyl)oxetan-3-yl]oxyacetic acid, 2-[[3-(4-fluorophenyl)-3-oxetanyl]oxy]acetic acid, 2-[3-(4-fluorophenyl)oxetan-3-yl]oxyacetic acid, 2-[3-(4-fluorophenyl)oxetan-3-yl]oxyethanoic acid, ...].
biodb.DEBUG[2024-12-07 16:03:44.556][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:44.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:44.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:44.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:44.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:44.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:44.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:44.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:44.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:44.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:44.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:44.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.580][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:44.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:44.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.586][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:44.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:44.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.592][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:44.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:44.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:44.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:44.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:44.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:44.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.610][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:44.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:44.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:44.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:44.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:44.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:44.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.625][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:44.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:44.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:44.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:44.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.635][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:44.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:44.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.640][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:44.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:44.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.645][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:44.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:44.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.650][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:44.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:44.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.655][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:44.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:44.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:44.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:44.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.665][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:44.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:44.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.670][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:44.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:44.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:44.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:44.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:44.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:44.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.685][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:44.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:44.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:44.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:44.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.696][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:44.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:44.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.702][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:44.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:44.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.708][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:44.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:44.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:44.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:44.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.718][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:44.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:44.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.723][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:44.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:44.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.729][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:44.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:44.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.734][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:44.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:44.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.739][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:44.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:44.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.744][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:44.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:44.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.749][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:44.750][private$selectFields]
biodb.TRACE[2024-12-07 16:03:44.752][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:44.753][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:44.754][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:44.755][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:44.757][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:44.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.759][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.760][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:44.762][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:44.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.764][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.765][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:44.767][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:44.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.769][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.770][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:44.772][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:44.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.774][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.775][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:44.777][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:44.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.779][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.780][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:44.782][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:44.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.784][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.786][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:44.787][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:44.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.789][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.791][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:44.793][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:44.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.796][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.797][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:44.799][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:44.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.802][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.810][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:44.812][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:44.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.815][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.816][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:44.818][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:44.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.820][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.821][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:44.823][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:44.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.825][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.826][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:44.827][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:44.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.830][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.831][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:44.832][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:44.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.835][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.836][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:44.837][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:44.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.840][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.841][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:44.842][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:44.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.845][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.846][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:44.847][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:44.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.850][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.851][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:44.852][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:44.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.855][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.856][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:44.857][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:44.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.860][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.861][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:44.862][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:44.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.865][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.866][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:44.867][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:44.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.870][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.871][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:44.872][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:44.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.875][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.876][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:44.877][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:44.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.880][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.881][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:44.882][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:44.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.885][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.886][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:44.887][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:44.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.890][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.891][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:44.892][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:44.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.895][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.896][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:44.897][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:44.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.900][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.901][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:44.902][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:44.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.905][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.906][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:44.907][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:44.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.909][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.911][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:44.912][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:44.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.914][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.916][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:44.917][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:44.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.919][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.921][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:44.922][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:44.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.924][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.926][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:44.927][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:44.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.929][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.931][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:44.932][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:44.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.934][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.936][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:44.937][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:44.938][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:44.939][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:44.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.942][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.943][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:44.944][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:44.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.947][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.948][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:44.949][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:44.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.952][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.953][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:44.954][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:44.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.956][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.958][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:44.959][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:44.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.961][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.963][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:44.964][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:44.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.966][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.967][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:44.969][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:44.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.971][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.972][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:44.974][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:44.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.976][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.977][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:44.979][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:44.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.981][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.982][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:44.983][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:44.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.986][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.987][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:44.988][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:44.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.991][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.992][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:44.993][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:44.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:44.995][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:44.997][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:44.998][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:44.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.000][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.002][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:45.003][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:45.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.005][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.006][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:45.008][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:45.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.010][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.011][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:45.013][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:45.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.015][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.016][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-07 16:03:45.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:45.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:45.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:45.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:45.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:45.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:45.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.033][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:45.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:45.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.038][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:45.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:45.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.043][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:45.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:45.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.048][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:45.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:45.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.053][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:45.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:45.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.058][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:45.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:45.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.063][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:45.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:45.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.068][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:45.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:45.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.073][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:45.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:45.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:45.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:45.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.083][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:45.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:45.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.088][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:45.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:45.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.093][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:45.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:45.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.098][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:45.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:45.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.103][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:45.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:45.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.108][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:45.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:45.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.113][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:45.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:45.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.118][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:45.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:45.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.123][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:45.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:45.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.128][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:45.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:45.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.133][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:45.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:45.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.139][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:45.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:45.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.144][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:45.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:45.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.148][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:45.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:45.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.154][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:45.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:45.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.159][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:45.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:45.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.164][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:45.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:45.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:45.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:45.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:45.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:45.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:45.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:45.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:45.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:45.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:45.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:45.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:45.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:45.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.199][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:45.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:45.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.204][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:45.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:45.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.209][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:45.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:45.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.214][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:45.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:45.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.226][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:45.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:45.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.232][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:45.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:45.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.237][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:45.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:45.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.242][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:45.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:45.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.247][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:45.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:45.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.253][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:45.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:45.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.258][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:45.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:45.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.263][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:45.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:45.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.280][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172416819, 2-[3-(3-fluorophenyl)oxetan-3-yl]oxyacetic acid, 2-[[3-(3-fluorophenyl)-3-oxetanyl]oxy]acetic acid, 2-[3-(3-fluorophenyl)oxetan-3-yl]oxyacetic acid, 2-[3-(3-fluorophenyl)oxetan-3-yl]oxyethanoic acid, ...].
biodb.DEBUG[2024-12-07 16:03:45.282][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:45.283][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-07 16:03:45.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:45.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:45.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:45.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:45.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:45.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:45.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.307][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:45.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:45.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:45.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:45.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:45.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:45.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.322][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:45.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:45.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:45.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:45.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:45.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:45.337][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:45.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:45.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:45.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:45.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:45.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:45.356][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:45.360][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:45.362][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-12-07 16:03:45.363][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:45.365][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-12-07 16:03:45.367][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:45.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:45.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:45.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:45.377][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:45.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:45.380][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:45.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:45.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:45.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:45.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:45.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:45.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.392][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:45.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:45.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:45.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:45.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.402][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:45.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:45.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.407][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:45.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:45.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.412][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:45.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:45.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.417][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:45.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:45.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.422][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:45.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:45.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:45.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:45.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.432][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:45.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:45.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.437][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:45.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:45.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.442][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:45.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:45.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.447][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:45.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:45.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.452][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:45.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:45.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:45.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:45.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.462][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:45.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:45.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.467][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:45.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:45.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.472][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:45.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:45.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.477][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:45.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:45.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:45.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:45.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:45.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:45.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.491][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:45.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:45.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.496][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:45.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:45.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.501][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:45.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:45.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.506][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:45.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:45.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.511][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:45.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:45.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.516][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:45.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:45.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.521][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:45.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:45.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.526][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:45.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:45.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.531][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:45.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:45.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.536][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:45.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:45.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.540][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:45.542][private$selectFields]
biodb.TRACE[2024-12-07 16:03:45.543][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:45.544][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:45.545][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:45.546][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:45.548][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:45.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.550][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.551][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:45.553][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:45.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.555][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.556][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:45.558][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:45.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.560][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.562][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:45.563][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:45.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.566][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.567][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:45.568][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:45.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.571][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.572][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:45.573][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:45.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.576][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.577][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:45.578][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:45.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.581][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.582][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:45.583][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:45.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.586][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.587][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:45.589][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:45.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.591][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.592][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:45.594][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:45.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.596][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.597][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:45.599][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:45.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.601][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.602][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:45.603][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:45.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.606][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.607][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:45.608][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:45.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.611][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.612][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:45.613][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:45.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.616][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.617][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:45.618][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:45.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.621][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.622][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:45.623][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:45.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.626][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.627][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:45.628][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:45.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.631][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.632][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:45.633][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:45.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.642][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.644][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:45.645][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:45.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.648][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.649][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:45.651][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:45.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.653][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.654][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:45.656][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:45.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.658][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.659][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:45.661][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:45.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.663][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.664][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:45.666][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:45.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.668][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.669][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:45.671][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:45.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.673][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.674][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:45.676][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:45.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.678][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.679][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:45.681][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:45.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.683][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.684][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:45.686][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:45.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.688][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.689][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:45.691][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:45.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.693][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.694][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:45.696][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:45.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.698][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.699][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:45.701][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:45.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.703][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.704][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:45.706][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:45.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.708][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.709][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:45.710][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:45.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.713][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.714][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:45.715][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:45.717][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:45.718][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:45.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.720][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.722][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:45.723][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:45.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.725][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.727][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:45.728][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:45.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.730][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.732][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:45.733][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:45.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.735][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.737][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:45.738][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:45.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.740][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.741][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:45.743][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:45.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.745][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.746][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:45.748][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:45.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.750][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.751][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:45.753][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:45.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.755][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.756][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:45.758][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:45.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.760][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.761][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:45.763][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:45.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.765][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.766][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:45.768][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:45.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.770][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.771][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:45.772][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:45.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.775][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.776][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:45.777][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:45.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.780][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.781][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:45.782][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:45.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.785][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.786][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:45.787][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:45.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.790][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.791][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:45.792][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:45.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.795][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.796][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-07 16:03:45.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:45.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:45.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:45.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:45.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:45.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:45.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:45.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:45.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.818][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:45.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:45.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.823][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:45.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:45.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:45.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:45.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.833][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:45.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:45.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:45.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:45.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.843][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:45.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:45.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:45.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:45.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.853][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:45.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:45.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:45.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:45.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.863][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:45.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:45.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.868][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:45.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:45.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.873][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:45.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:45.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.878][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:45.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:45.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.883][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:45.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:45.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.888][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:45.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:45.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.893][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:45.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:45.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.898][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:45.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:45.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.904][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:45.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:45.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.909][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:45.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:45.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.914][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:45.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:45.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.919][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:45.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:45.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.924][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:45.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:45.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.929][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:45.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:45.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.934][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:45.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:45.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.939][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:45.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:45.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.944][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:45.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:45.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:45.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:45.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:45.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:45.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:45.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:45.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:45.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:45.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.969][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:45.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:45.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:45.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:45.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.980][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:45.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:45.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.985][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:45.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:45.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.990][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:45.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:45.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:45.995][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:45.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:45.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:45.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.000][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:46.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:46.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.005][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:46.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:46.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.010][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:46.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:46.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.015][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:46.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:46.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.020][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:46.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:46.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.025][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:46.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:46.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.030][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:46.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:46.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.035][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:46.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:46.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.058][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172431267, octyl methylsulfanylformate, (methylthio)formic acid octyl ester, octyl methylsulfanylformate, octyl methylsulfanylmethanoate, ...].
biodb.DEBUG[2024-12-07 16:03:46.060][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:46.061][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:46.062][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:46.069][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:46.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:46.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:46.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:46.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:46.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:46.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:46.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:46.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.084][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:46.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:46.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.089][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:46.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:46.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.094][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:46.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:46.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.099][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:46.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:46.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.104][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:46.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:46.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:46.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:46.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:46.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:46.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.119][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:46.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:46.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.124][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:46.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:46.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.129][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:46.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:46.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.134][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:46.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:46.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.139][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:46.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:46.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.144][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:46.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:46.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.149][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:46.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:46.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.153][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:46.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:46.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.158][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:46.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:46.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.163][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:46.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:46.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.168][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:46.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:46.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:46.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:46.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.178][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:46.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:46.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:46.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:46.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:46.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:46.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.194][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:46.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:46.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.199][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:46.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:46.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.204][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:46.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:46.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.209][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:46.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:46.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.214][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:46.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:46.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.219][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:46.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:46.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.224][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:46.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:46.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.229][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:46.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:46.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.234][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:46.235][private$selectFields]
biodb.TRACE[2024-12-07 16:03:46.237][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:46.238][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:46.239][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:46.240][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:46.242][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:46.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.244][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.245][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:46.246][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:46.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.249][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.250][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:46.251][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:46.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.253][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.255][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:46.256][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:46.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.258][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.259][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:46.261][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:46.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.263][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.264][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:46.266][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:46.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.268][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.269][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:46.270][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:46.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.273][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.274][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:46.275][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:46.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.278][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.279][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:46.280][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:46.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.282][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.284][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:46.285][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:46.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.287][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.289][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:46.290][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:46.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.292][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.293][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:46.295][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:46.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.297][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.298][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:46.299][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:46.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.302][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.303][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:46.304][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:46.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.306][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.308][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:46.309][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:46.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.311][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.312][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:46.314][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:46.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.316][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.317][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:46.318][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:46.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.321][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.322][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:46.323][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:46.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.326][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.327][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:46.328][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:46.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.331][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.332][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:46.333][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:46.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.335][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.337][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:46.338][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:46.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.340][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.342][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:46.343][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:46.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.345][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.347][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:46.348][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:46.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.350][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.351][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:46.353][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:46.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.355][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.356][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:46.358][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:46.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.360][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.361][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:46.362][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:46.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.365][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.366][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:46.367][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:46.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.370][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.371][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:46.372][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:46.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.375][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.376][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:46.377][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:46.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.380][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.381][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:46.382][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:46.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.385][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.386][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:46.387][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:46.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.390][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.391][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:46.392][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:46.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.395][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.396][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:46.397][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:46.399][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:46.400][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:46.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.402][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.404][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:46.405][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:46.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.407][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.409][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:46.410][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:46.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.412][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.414][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:46.415][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:46.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.417][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.419][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:46.420][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:46.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.422][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.423][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:46.425][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:46.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.427][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.428][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:46.430][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:46.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.432][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.433][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:46.435][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:46.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.437][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.438][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:46.440][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:46.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.442][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.443][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:46.445][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:46.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.447][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.448][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:46.450][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:46.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.452][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.453][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:46.455][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:46.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.457][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.458][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:46.460][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:46.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.469][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.471][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:46.472][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:46.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.475][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.476][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:46.478][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:46.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.480][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.481][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:46.483][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:46.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.485][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.487][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-07 16:03:46.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:46.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:46.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:46.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:46.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:46.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:46.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.504][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:46.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:46.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.509][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:46.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:46.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:46.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:46.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:46.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:46.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.524][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:46.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:46.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.529][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:46.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:46.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.534][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:46.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:46.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.539][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:46.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:46.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.544][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:46.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:46.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.549][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:46.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:46.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.554][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:46.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:46.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.559][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:46.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:46.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.565][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:46.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:46.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.570][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:46.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:46.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.575][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:46.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:46.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.580][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:46.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:46.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.585][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:46.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:46.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.591][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:46.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:46.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:46.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:46.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.601][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:46.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:46.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.606][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:46.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:46.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.611][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:46.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:46.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.617][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:46.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:46.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.622][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:46.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:46.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.627][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:46.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:46.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.632][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:46.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:46.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.638][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:46.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:46.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:46.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:46.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:46.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:46.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:46.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:46.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:46.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:46.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:46.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:46.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:46.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:46.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.674][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:46.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:46.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.679][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:46.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:46.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.684][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:46.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:46.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.690][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:46.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:46.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.695][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:46.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:46.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.700][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:46.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:46.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.705][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:46.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:46.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.710][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:46.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:46.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.715][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:46.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:46.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.720][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:46.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:46.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.725][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:46.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:46.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.730][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:46.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:46.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.747][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172417440, 2-[4-(isocyanomethyl)phenoxy]-N,N-dimethyl-ethanamine, 2-[4-(isocyanomethyl)phenoxy]-N,N-dimethylethanamine, 2-[4-(isocyanomethyl)phenoxy]-N,N-dimethylethanamine, 2-[4-(isocyanomethyl)phenoxy]-N,N-dimethyl-ethanamine, ...].
biodb.DEBUG[2024-12-07 16:03:46.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:46.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:46.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:46.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:46.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:46.759][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:46.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:46.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:46.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:46.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:46.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:46.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.772][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:46.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:46.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.777][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:46.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:46.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.782][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:46.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:46.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.787][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:46.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:46.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.792][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:46.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:46.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.797][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:46.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:46.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.802][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:46.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:46.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.807][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:46.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:46.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:46.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:46.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.817][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:46.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:46.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.822][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:46.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:46.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.827][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:46.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:46.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.832][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:46.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:46.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:46.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:46.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.842][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:46.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:46.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:46.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:46.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.852][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:46.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:46.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.857][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:46.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:46.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.862][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:46.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:46.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:46.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:46.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:46.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:46.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:46.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:46.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.889][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:46.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:46.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.895][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:46.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:46.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.900][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:46.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:46.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.905][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:46.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:46.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.911][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:46.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:46.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.916][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:46.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:46.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.921][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:46.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:46.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.926][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:46.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:46.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.931][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:46.932][private$selectFields]
biodb.TRACE[2024-12-07 16:03:46.933][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:46.935][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:46.936][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:46.937][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:46.938][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:46.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.941][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.942][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:46.943][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:46.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.946][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.947][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:46.948][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:46.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.951][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.952][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:46.953][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:46.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.956][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.957][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:46.958][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:46.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.961][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.962][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:46.963][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:46.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.966][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.967][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:46.968][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:46.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.971][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.972][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:46.973][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:46.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.976][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.977][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:46.979][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:46.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.981][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.982][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:46.984][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:46.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.986][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.987][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:46.989][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:46.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.991][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.992][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:46.993][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:46.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:46.996][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:46.997][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:46.999][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:47.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.001][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.002][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:47.003][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:47.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.006][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.007][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:47.008][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:47.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.011][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.012][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:47.013][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:47.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.016][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.017][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:47.019][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:47.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.021][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.022][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:47.023][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:47.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.026][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.027][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:47.028][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:47.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.031][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.032][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:47.033][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:47.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.036][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.037][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:47.038][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:47.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.041][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.042][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:47.043][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:47.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.046][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.047][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:47.048][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:47.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.051][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.052][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:47.053][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:47.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.056][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.057][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:47.058][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:47.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.061][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.062][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:47.063][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:47.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.066][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.067][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:47.068][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:47.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.071][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.072][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:47.073][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:47.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.076][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.077][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:47.078][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:47.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.081][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.082][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:47.084][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:47.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.086][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.087][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:47.089][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:47.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.091][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.092][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:47.094][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:47.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.096][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.097][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:47.098][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:47.100][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:47.101][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:47.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.103][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.105][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:47.106][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:47.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.108][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.110][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:47.111][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:47.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.113][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.114][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:47.116][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:47.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.118][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.119][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:47.121][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:47.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.123][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.124][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:47.126][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:47.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.128][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.129][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:47.131][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:47.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.133][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.134][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:47.136][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:47.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.138][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.139][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:47.141][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:47.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.143][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.144][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:47.146][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:47.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.148][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.149][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:47.150][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:47.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.153][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.154][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:47.156][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:47.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.158][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.159][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:47.160][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:47.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.163][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.164][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:47.165][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:47.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.168][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.169][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:47.170][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:47.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.173][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.174][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:47.175][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:47.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.177][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.179][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-07 16:03:47.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:47.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:47.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:47.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:47.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:47.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:47.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.195][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:47.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:47.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:47.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:47.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:47.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:47.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.210][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:47.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:47.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.215][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:47.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:47.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:47.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:47.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.225][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:47.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:47.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:47.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:47.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.235][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:47.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:47.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.240][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:47.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:47.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.244][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:47.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:47.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.249][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:47.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:47.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.254][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:47.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:47.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.259][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:47.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:47.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.264][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:47.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:47.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.269][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:47.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:47.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.274][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:47.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:47.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.279][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:47.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:47.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.284][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:47.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:47.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.289][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:47.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:47.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.301][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:47.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:47.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:47.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:47.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.313][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:47.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:47.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.318][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:47.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:47.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.323][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:47.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:47.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.328][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:47.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:47.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.333][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:47.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:47.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:47.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:47.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:47.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:47.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:47.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:47.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:47.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:47.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:47.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:47.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:47.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:47.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.369][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:47.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:47.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.374][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:47.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:47.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.378][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:47.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:47.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.384][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:47.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:47.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.389][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:47.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:47.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.393][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:47.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:47.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.399][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:47.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:47.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.403][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:47.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:47.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.408][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:47.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:47.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.413][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:47.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:47.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.418][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:47.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:47.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.423][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:47.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:47.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.439][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172414169, 3-(2-methoxyphenyl)-2,2-dimethyl-cyclopropanecarbaldehyde, 3-(2-methoxyphenyl)-2,2-dimethyl-1-cyclopropanecarboxaldehyde, 3-(2-methoxyphenyl)-2,2-dimethylcyclopropane-1-carbaldehyde, 3-(2-methoxyphenyl)-2,2-dimethyl-cyclopropane-1-carbaldehyde, ...].
biodb.DEBUG[2024-12-07 16:03:47.441][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:47.442][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:47.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:47.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:47.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:47.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:47.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:47.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:47.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:47.467][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:47.471][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:47.472][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-12-07 16:03:47.474][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:47.475][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-12-07 16:03:47.478][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:47.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:47.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:47.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:47.488][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:47.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:47.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:47.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:47.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:47.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:47.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:47.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:47.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.502][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:47.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:47.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.507][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:47.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:47.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.512][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:47.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:47.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:47.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:47.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:47.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:47.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:47.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:47.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:47.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:47.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.536][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:47.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:47.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.541][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:47.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:47.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.546][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:47.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:47.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.551][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:47.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:47.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.556][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:47.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:47.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.561][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:47.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:47.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:47.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:47.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.570][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:47.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:47.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:47.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:47.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.580][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:47.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:47.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.585][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:47.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:47.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:47.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:47.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:47.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:47.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.600][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:47.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:47.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:47.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:47.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.609][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:47.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:47.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.614][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:47.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:47.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.619][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:47.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:47.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.624][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:47.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:47.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.629][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:47.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:47.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.634][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:47.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:47.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.639][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:47.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:47.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.644][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:47.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:47.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.648][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:47.649][private$selectFields]
biodb.TRACE[2024-12-07 16:03:47.651][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:47.652][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:47.653][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:47.654][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:47.655][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:47.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.658][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.659][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:47.660][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:47.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.662][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.663][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:47.665][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:47.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.667][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.668][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:47.669][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:47.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.672][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.673][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:47.674][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:47.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.677][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.678][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:47.679][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:47.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.681][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.683][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:47.684][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:47.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.686][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.687][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:47.689][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:47.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.691][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.692][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:47.693][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:47.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.696][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.697][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:47.698][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:47.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.701][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.709][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:47.710][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:47.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.713][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.714][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:47.716][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:47.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.718][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.719][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:47.720][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:47.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.723][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.724][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:47.725][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:47.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.728][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.729][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:47.730][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:47.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.733][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.734][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:47.735][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:47.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.737][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.739][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:47.740][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:47.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.742][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.744][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:47.745][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:47.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.747][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.748][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:47.750][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:47.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.752][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.753][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:47.755][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:47.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.757][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.758][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:47.759][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:47.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.762][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.763][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:47.764][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:47.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.766][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.767][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:47.769][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:47.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.771][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.772][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:47.773][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:47.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.776][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.777][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:47.778][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:47.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.781][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.782][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:47.783][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:47.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.785][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.787][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:47.788][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:47.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.790][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.791][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:47.793][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:47.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.795][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.796][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:47.797][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:47.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.800][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.801][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:47.802][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:47.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.804][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.806][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:47.807][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:47.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.809][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.810][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:47.812][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:47.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.814][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.815][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:47.816][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:47.818][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:47.819][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:47.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.821][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.822][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:47.824][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:47.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.826][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.827][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:47.828][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:47.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.831][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.832][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:47.833][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:47.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.836][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.837][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:47.838][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:47.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.840][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.842][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:47.843][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:47.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.845][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.846][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:47.848][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:47.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.850][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.851][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:47.852][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:47.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.855][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.856][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:47.857][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:47.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.859][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.861][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:47.862][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:47.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.864][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.865][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:47.867][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:47.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.869][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.870][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:47.871][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:47.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.873][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.875][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:47.876][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:47.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.878][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.879][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:47.880][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:47.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.883][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.884][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:47.885][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:47.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.887][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.889][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:47.890][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:47.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.892][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.893][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-07 16:03:47.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:47.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:47.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:47.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:47.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:47.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:47.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:47.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:47.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.914][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:47.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:47.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:47.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:47.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.924][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:47.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:47.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.928][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:47.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:47.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.933][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:47.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:47.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.938][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:47.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:47.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.943][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:47.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:47.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.948][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:47.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:47.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.953][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:47.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:47.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.958][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:47.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:47.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.962][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:47.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:47.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.967][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:47.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:47.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:47.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:47.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.977][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:47.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:47.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.982][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:47.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:47.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.987][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:47.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:47.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.992][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:47.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:47.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:47.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:47.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:47.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:47.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:48.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:48.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.007][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:48.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:48.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.012][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:48.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:48.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.017][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:48.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:48.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.021][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:48.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:48.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.026][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:48.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:48.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.031][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:48.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:48.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.036][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:48.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:48.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.041][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:48.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:48.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:48.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:48.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:48.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:48.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:48.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:48.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:48.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:48.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:48.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:48.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.071][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:48.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:48.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.076][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:48.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:48.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.081][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:48.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:48.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.086][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:48.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:48.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.091][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:48.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:48.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.096][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:48.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:48.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.107][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:48.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:48.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.113][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:48.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:48.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.118][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:48.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:48.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.123][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:48.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:48.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.128][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:48.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:48.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.133][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:48.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:48.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.149][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172420161, 1-chloro-4-(pent-4-enylsulfanylmethyl)benzene, 1-chloro-4-[(pent-4-enylthio)methyl]benzene, 1-chloro-4-(pent-4-enylsulfanylmethyl)benzene, 1-chloranyl-4-(pent-4-enylsulfanylmethyl)benzene, ...].
biodb.DEBUG[2024-12-07 16:03:48.151][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:48.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:48.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:48.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:48.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:48.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:48.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:48.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:48.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:48.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:48.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:48.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.174][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:48.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:48.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:48.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:48.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.184][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:48.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:48.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.189][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:48.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:48.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.194][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:48.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:48.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:48.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:48.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:48.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:48.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.209][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:48.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:48.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.214][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:48.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:48.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.219][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:48.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:48.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.224][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:48.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:48.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.229][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:48.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:48.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:48.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:48.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.240][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:48.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:48.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.245][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:48.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:48.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.249][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:48.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:48.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.254][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:48.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:48.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.259][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:48.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:48.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:48.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:48.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:48.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:48.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:48.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:48.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:48.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:48.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.284][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:48.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:48.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.289][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:48.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:48.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.294][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:48.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:48.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.299][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:48.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:48.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.304][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:48.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:48.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.309][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:48.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:48.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.314][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:48.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:48.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.319][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:48.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:48.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.324][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:48.325][private$selectFields]
biodb.TRACE[2024-12-07 16:03:48.326][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:48.327][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:48.329][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:48.330][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:48.331][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:48.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.333][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.335][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:48.336][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:48.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.338][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.339][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:48.341][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:48.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.343][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.344][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:48.346][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:48.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.348][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.349][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:48.350][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:48.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.353][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.354][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:48.355][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:48.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.358][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.359][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:48.360][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:48.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.362][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.364][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:48.365][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:48.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.367][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.368][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:48.370][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:48.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.372][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.373][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:48.375][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:48.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.377][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.378][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:48.379][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:48.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.382][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.383][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:48.384][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:48.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.386][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.388][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:48.389][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:48.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.391][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.392][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:48.394][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:48.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.396][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.397][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:48.399][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:48.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.401][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.402][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:48.403][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:48.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.406][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.407][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:48.408][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:48.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.411][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.412][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:48.413][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:48.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.415][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.417][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:48.418][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:48.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.420][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.422][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:48.423][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:48.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.425][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.426][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:48.428][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:48.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.430][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.431][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:48.433][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:48.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.435][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.436][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:48.438][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:48.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.440][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.441][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:48.442][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:48.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.445][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.446][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:48.447][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:48.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.450][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.451][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:48.452][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:48.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.454][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.456][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:48.457][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:48.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.459][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.460][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:48.462][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:48.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.464][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.465][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:48.467][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:48.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.469][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.470][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:48.471][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:48.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.474][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.475][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:48.476][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:48.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.479][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.480][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:48.481][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:48.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.483][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.485][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:48.486][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:48.487][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:48.488][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:48.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.491][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.492][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:48.493][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:48.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.495][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.497][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:48.498][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:48.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.500][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.501][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:48.503][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:48.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.505][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.506][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:48.514][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:48.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.517][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.518][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:48.520][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:48.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.522][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.523][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:48.525][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:48.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.527][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.528][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:48.529][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:48.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.532][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.533][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:48.534][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:48.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.537][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.538][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:48.539][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:48.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.541][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.543][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:48.544][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:48.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.546][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.547][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:48.549][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:48.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.551][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.552][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:48.554][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:48.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.556][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.557][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:48.559][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:48.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.561][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.562][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:48.564][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:48.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.566][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.567][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:48.568][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:48.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.571][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.572][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-07 16:03:48.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:48.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:48.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:48.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:48.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:48.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:48.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.588][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:48.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:48.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:48.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:48.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.598][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:48.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:48.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.604][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:48.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:48.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.608][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:48.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:48.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.613][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:48.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:48.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:48.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:48.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:48.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:48.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.628][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:48.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:48.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.633][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:48.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:48.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:48.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:48.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.643][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:48.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:48.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.648][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:48.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:48.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.653][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:48.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:48.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:48.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:48.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.663][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:48.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:48.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.668][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:48.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:48.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.673][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:48.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:48.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.678][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:48.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:48.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:48.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:48.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.688][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:48.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:48.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.693][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:48.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:48.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.698][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:48.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:48.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.703][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:48.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:48.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.708][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:48.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:48.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.713][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:48.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:48.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.718][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:48.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:48.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:48.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:48.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.728][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:48.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:48.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:48.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:48.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:48.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:48.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:48.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:48.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:48.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:48.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.753][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:48.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:48.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.758][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:48.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:48.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.762][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:48.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:48.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.768][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:48.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:48.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.772][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:48.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:48.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.777][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:48.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:48.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.782][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:48.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:48.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.787][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:48.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:48.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.792][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:48.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:48.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.797][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:48.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:48.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.802][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:48.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:48.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.807][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:48.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:48.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.823][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172416872, 4-phenylthieno[2,3-b]pyridin-3-amine, 4-phenyl-3-thieno[2,3-b]pyridinamine, 4-phenylthieno[2,3-b]pyridin-3-amine, 4-phenylthieno[2,3-b]pyridin-3-amine, ...].
biodb.DEBUG[2024-12-07 16:03:48.825][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:48.826][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:48.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:48.833][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:48.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:48.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:48.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:48.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:48.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:48.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:48.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:48.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.847][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:48.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:48.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:48.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:48.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.857][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:48.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:48.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:48.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:48.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:48.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:48.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:48.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:48.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.876][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:48.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:48.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.881][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:48.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:48.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.886][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:48.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:48.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.891][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:48.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:48.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.896][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:48.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:48.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.901][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:48.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:48.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.905][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:48.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:48.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:48.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:48.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.922][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:48.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:48.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.927][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:48.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:48.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.932][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:48.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:48.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.937][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:48.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:48.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:48.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:48.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:48.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:48.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:48.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:48.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.956][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:48.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:48.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.961][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:48.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:48.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.966][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:48.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:48.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.971][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:48.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:48.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.976][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:48.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:48.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.981][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:48.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:48.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.986][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:48.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:48.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.990][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:48.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:48.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:48.995][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:48.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:48.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:48.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.000][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:49.001][private$selectFields]
biodb.TRACE[2024-12-07 16:03:49.002][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:49.004][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:49.005][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:49.006][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:49.007][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:49.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.010][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.011][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:49.012][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:49.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.014][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.016][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:49.017][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:49.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.019][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.021][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:49.022][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:49.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.024][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.025][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:49.027][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:49.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.029][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.030][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:49.032][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:49.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.034][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.035][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:49.037][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:49.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.039][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.040][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:49.041][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:49.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.044][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.045][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:49.046][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:49.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.049][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.050][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:49.051][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:49.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.054][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.055][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:49.056][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:49.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.058][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.060][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:49.061][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:49.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.063][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.064][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:49.066][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:49.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.068][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.069][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:49.071][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:49.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.073][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.074][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:49.075][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:49.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.078][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.079][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:49.080][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:49.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.083][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.084][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:49.085][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:49.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.088][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.089][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:49.090][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:49.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.092][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.094][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:49.095][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:49.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.097][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.098][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:49.100][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:49.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.102][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.103][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:49.105][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:49.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.107][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.108][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:49.109][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:49.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.112][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.113][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:49.114][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:49.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.117][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.118][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:49.119][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:49.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.122][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.123][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:49.124][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:49.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.126][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.128][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:49.129][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:49.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.131][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.133][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:49.134][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:49.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.136][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.137][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:49.139][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:49.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.141][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.142][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:49.143][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:49.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.146][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.147][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:49.148][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:49.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.151][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.152][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:49.153][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:49.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.156][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.157][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:49.158][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:49.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.160][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.162][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:49.163][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:49.164][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:49.166][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:49.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.168][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.169][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:49.171][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:49.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.173][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.174][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:49.176][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:49.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.178][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.179][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:49.180][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:49.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.183][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.184][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:49.185][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:49.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.188][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.189][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:49.190][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:49.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.192][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.194][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:49.195][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:49.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.197][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.199][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:49.200][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:49.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.202][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.203][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:49.205][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:49.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.207][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.208][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:49.209][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:49.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.212][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.213][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:49.214][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:49.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.216][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.218][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:49.219][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:49.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.221][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.222][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:49.224][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:49.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.226][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.227][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:49.228][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:49.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.231][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.232][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:49.233][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:49.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.236][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.237][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:49.238][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:49.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.240][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.242][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-07 16:03:49.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:49.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:49.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:49.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:49.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:49.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:49.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.258][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:49.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:49.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.262][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:49.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:49.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.267][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:49.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:49.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.272][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:49.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:49.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.277][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:49.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:49.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.282][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:49.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:49.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.287][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:49.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:49.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.292][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:49.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:49.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.296][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:49.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:49.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.301][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:49.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:49.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.306][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:49.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:49.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.311][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:49.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:49.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.323][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:49.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:49.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.329][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:49.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:49.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.334][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:49.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:49.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.339][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:49.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:49.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.344][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:49.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:49.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.349][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:49.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:49.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.354][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:49.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:49.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.359][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:49.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:49.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.364][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:49.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:49.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.369][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:49.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:49.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.374][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:49.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:49.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.379][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:49.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:49.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.384][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:49.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:49.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.388][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:49.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:49.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.393][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:49.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:49.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:49.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:49.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:49.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:49.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:49.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:49.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.413][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:49.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:49.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:49.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:49.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:49.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:49.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.428][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:49.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:49.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.433][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:49.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:49.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.437][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:49.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:49.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.443][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:49.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:49.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.447][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:49.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:49.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.452][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:49.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:49.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.457][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:49.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:49.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.462][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:49.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:49.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.467][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:49.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:49.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.472][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:49.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:49.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.477][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:49.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:49.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.482][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:49.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:49.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.498][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172416854, 1-chloro-1,1-difluoro-5,6-dimethyl-heptane-2,4-dione, 1-chloro-1,1-difluoro-5,6-dimethylheptane-2,4-dione, 1-chloro-1,1-difluoro-5,6-dimethylheptane-2,4-dione, 1-chloranyl-1,1-bis(fluoranyl)-5,6-dimethyl-heptane-2,4-dione, ...].
biodb.DEBUG[2024-12-07 16:03:49.499][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:49.500][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:49.512][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:49.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:49.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:49.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:49.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:49.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:49.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:49.531][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:49.536][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:49.537][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-12-07 16:03:49.539][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:49.540][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-12-07 16:03:49.542][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:49.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:49.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:49.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:49.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:49.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:49.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:49.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:49.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:49.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:49.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:49.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:49.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.567][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:49.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:49.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.572][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:49.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:49.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.577][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:49.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:49.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.582][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:49.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:49.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.587][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:49.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:49.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:49.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:49.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.596][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:49.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:49.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.601][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:49.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:49.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.606][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:49.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:49.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:49.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:49.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.616][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:49.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:49.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.620][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:49.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:49.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.625][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:49.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:49.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.630][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:49.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:49.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:49.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:49.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.640][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:49.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:49.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.644][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:49.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:49.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.649][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:49.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:49.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:49.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:49.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:49.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:49.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:49.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:49.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:49.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:49.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.673][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:49.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:49.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.678][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:49.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:49.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.683][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:49.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:49.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.688][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:49.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:49.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.693][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:49.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:49.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.697][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:49.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:49.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.702][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:49.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:49.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.707][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:49.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:49.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.712][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:49.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:49.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.723][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:49.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:49.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.729][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:49.730][private$selectFields]
biodb.TRACE[2024-12-07 16:03:49.731][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:49.732][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:49.734][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:49.735][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:49.736][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:49.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.738][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.740][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:49.741][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:49.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.743][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.744][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:49.746][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:49.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.748][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.749][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:49.751][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:49.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.753][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.754][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:49.755][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:49.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.758][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.759][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:49.760][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:49.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.763][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.764][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:49.765][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:49.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.768][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.769][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:49.770][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:49.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.772][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.774][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:49.775][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:49.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.777][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.778][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:49.780][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:49.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.782][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.783][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:49.784][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:49.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.787][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.788][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:49.789][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:49.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.791][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.793][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:49.794][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:49.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.796][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.797][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:49.799][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:49.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.801][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.802][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:49.804][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:49.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.806][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.807][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:49.808][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:49.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.811][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.812][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:49.813][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:49.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.815][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.817][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:49.818][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:49.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.820][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.821][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:49.823][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:49.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.825][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.826][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:49.827][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:49.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.830][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.831][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:49.832][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:49.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.835][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.836][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:49.837][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:49.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.839][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.840][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:49.842][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:49.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.844][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.845][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:49.847][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:49.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.849][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.850][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:49.851][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:49.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.854][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.855][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:49.856][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:49.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.858][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.860][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:49.861][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:49.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.863][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.864][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:49.866][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:49.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.868][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.869][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:49.870][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:49.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.873][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.874][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:49.875][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:49.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.877][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.879][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:49.880][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:49.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.882][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.883][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:49.885][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:49.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.887][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.888][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:49.889][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:49.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.892][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.893][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:49.894][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:49.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.897][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.898][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:49.899][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:49.900][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:49.901][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:49.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.904][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.905][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:49.906][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:49.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.909][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.910][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:49.911][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:49.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.913][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.914][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:49.916][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:49.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.918][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.919][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:49.921][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:49.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.923][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.924][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:49.925][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:49.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.928][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.929][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:49.930][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:49.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.932][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.934][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:49.935][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:49.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.937][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.938][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:49.940][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:49.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.942][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.943][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:49.944][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:49.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.947][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.948][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:49.949][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:49.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.951][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.953][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:49.954][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:49.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.956][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.957][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:49.959][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:49.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.961][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.962][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:49.963][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:49.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.966][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.967][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:49.968][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:49.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.971][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.972][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:49.973][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:49.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.975][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.977][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-07 16:03:49.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:49.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:49.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:49.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:49.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:49.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:49.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:49.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:49.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:49.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:49.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:49.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:50.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:50.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:50.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.008][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:50.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:50.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.012][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:50.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:50.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:50.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:50.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.022][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:50.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:50.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.027][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:50.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:50.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.032][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:50.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:50.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.037][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:50.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:50.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.042][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:50.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:50.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.047][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:50.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:50.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.052][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:50.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:50.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:50.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:50.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:50.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:50.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.067][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:50.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:50.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.071][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:50.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:50.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.076][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:50.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:50.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:50.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:50.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.086][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:50.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:50.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.091][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:50.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:50.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.096][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:50.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:50.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.101][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:50.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:50.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.106][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:50.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:50.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.111][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:50.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:50.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.123][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:50.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:50.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.128][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:50.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:50.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:50.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:50.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:50.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:50.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.143][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:50.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:50.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:50.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:50.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:50.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:50.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:50.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:50.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.163][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:50.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:50.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.168][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:50.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:50.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.173][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:50.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:50.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.178][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:50.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:50.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.183][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:50.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:50.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.188][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:50.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:50.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.193][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:50.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:50.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.198][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:50.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:50.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.203][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:50.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:50.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.209][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:50.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:50.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.213][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:50.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:50.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.218][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:50.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:50.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.234][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172431267, octyl methylsulfanylformate, (methylthio)formic acid octyl ester, octyl methylsulfanylformate, octyl methylsulfanylmethanoate, ...].
biodb.DEBUG[2024-12-07 16:03:50.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:50.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:50.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:50.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:50.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:50.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:50.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:50.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:50.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:50.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:50.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:50.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:50.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:50.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.264][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:50.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:50.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.269][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:50.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:50.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.274][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:50.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:50.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:50.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:50.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.284][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:50.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:50.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.289][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:50.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:50.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.294][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:50.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:50.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.299][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:50.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:50.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.304][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:50.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:50.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.309][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:50.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:50.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.314][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:50.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:50.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.319][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:50.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:50.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:50.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:50.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:50.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:50.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.334][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:50.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:50.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.339][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:50.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:50.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.344][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:50.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:50.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:50.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:50.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:50.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:50.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:50.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:50.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:50.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:50.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.370][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:50.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:50.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.375][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:50.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:50.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.380][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:50.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:50.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.385][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:50.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:50.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.390][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:50.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:50.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.395][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:50.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:50.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.400][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:50.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:50.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.405][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:50.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:50.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.410][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:50.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:50.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.414][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:50.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:50.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.419][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:50.420][private$selectFields]
biodb.TRACE[2024-12-07 16:03:50.422][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:50.423][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:50.424][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:50.425][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:50.426][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:50.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.429][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.430][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:50.431][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:50.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.434][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.435][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:50.436][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:50.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.438][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.440][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:50.441][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:50.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.443][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.444][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:50.446][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:50.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.448][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.449][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:50.451][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:50.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.453][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.454][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:50.455][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:50.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.458][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.459][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:50.460][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:50.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.462][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.464][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:50.465][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:50.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.467][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.468][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:50.470][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:50.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.472][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.473][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:50.475][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:50.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.477][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.478][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:50.479][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:50.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.482][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.483][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:50.484][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:50.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.487][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.488][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:50.489][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:50.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.491][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.493][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:50.494][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:50.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.496][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.497][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:50.499][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:50.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.501][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.502][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:50.504][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:50.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.506][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.507][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:50.508][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:50.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.511][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.512][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:50.513][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:50.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.516][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.517][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:50.518][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:50.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.520][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.528][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:50.530][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:50.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.532][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.534][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:50.535][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:50.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.538][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.539][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:50.540][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:50.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.542][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.544][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:50.545][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:50.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.547][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.548][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:50.550][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:50.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.552][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.553][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:50.555][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:50.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.557][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.558][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:50.559][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:50.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.562][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.563][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:50.564][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:50.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.567][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.568][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:50.570][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:50.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.572][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.573][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:50.575][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:50.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.577][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.578][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:50.580][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:50.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.582][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.583][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:50.585][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:50.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.587][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.588][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:50.589][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:50.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.592][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.593][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:50.594][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:50.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.597][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.598][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:50.599][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:50.601][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:50.602][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:50.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.604][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.605][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:50.607][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:50.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.609][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.610][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:50.612][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:50.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.614][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.615][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:50.617][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:50.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.619][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.620][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:50.622][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:50.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.624][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.625][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:50.627][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:50.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.629][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.630][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:50.632][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:50.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.634][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.635][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:50.637][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:50.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.639][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.640][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:50.642][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:50.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.644][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.645][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:50.647][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:50.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.649][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.650][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:50.652][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:50.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.654][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.655][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:50.657][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:50.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.659][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.660][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:50.662][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:50.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.664][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.665][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:50.667][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:50.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.669][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.670][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:50.672][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:50.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.674][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.675][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:50.677][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:50.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.679][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.681][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-07 16:03:50.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:50.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:50.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:50.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:50.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:50.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:50.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.697][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:50.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:50.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:50.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:50.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.707][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:50.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:50.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.712][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:50.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:50.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:50.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:50.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.722][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:50.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:50.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.727][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:50.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:50.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.732][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:50.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:50.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.737][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:50.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:50.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.743][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:50.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:50.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.748][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:50.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:50.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.752][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:50.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:50.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.758][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:50.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:50.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.763][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:50.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:50.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:50.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:50.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.773][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:50.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:50.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.778][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:50.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:50.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.783][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:50.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:50.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.788][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:50.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:50.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:50.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:50.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.798][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:50.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:50.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.803][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:50.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:50.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.808][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:50.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:50.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:50.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:50.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.818][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:50.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:50.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.823][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:50.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:50.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.828][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:50.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:50.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.833][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:50.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:50.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.838][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:50.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:50.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:50.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:50.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:50.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:50.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:50.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:50.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:50.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:50.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.863][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:50.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:50.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.868][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:50.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:50.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.873][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:50.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:50.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.878][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:50.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:50.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.883][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:50.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:50.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.888][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:50.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:50.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.893][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:50.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:50.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.898][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:50.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:50.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.903][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:50.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:50.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.908][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:50.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:50.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.913][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:50.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:50.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.918][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:50.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:50.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.941][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172417440, 2-[4-(isocyanomethyl)phenoxy]-N,N-dimethyl-ethanamine, 2-[4-(isocyanomethyl)phenoxy]-N,N-dimethylethanamine, 2-[4-(isocyanomethyl)phenoxy]-N,N-dimethylethanamine, 2-[4-(isocyanomethyl)phenoxy]-N,N-dimethyl-ethanamine, ...].
biodb.DEBUG[2024-12-07 16:03:50.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:50.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:50.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:50.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:50.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:50.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:50.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:50.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:50.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:50.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:50.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:50.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.966][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:50.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:50.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.971][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:50.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:50.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.976][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:50.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:50.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.981][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:50.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:50.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.986][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:50.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:50.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.991][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:50.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:50.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:50.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:50.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:50.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:50.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:51.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:51.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.006][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:51.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:51.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:51.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:51.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.016][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:51.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:51.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.021][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:51.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:51.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.026][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:51.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:51.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.031][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:51.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:51.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.036][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:51.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:51.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.041][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:51.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:51.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.046][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:51.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:51.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.051][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:51.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:51.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:51.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:51.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:51.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:51.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:51.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:51.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:51.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:51.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.076][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:51.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:51.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.080][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:51.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:51.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.085][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:51.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:51.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.090][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:51.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:51.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.095][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:51.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:51.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.100][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:51.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:51.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.105][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:51.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:51.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.110][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:51.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:51.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.115][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:51.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:51.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.120][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:51.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:51.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.125][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:51.126][private$selectFields]
biodb.TRACE[2024-12-07 16:03:51.127][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:51.129][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:51.130][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:51.131][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:51.132][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:51.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.135][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.136][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:51.137][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:51.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.140][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.141][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:51.142][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:51.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.145][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.146][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:51.147][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:51.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.150][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.151][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:51.152][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:51.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.154][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.156][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:51.157][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:51.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.159][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.161][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:51.162][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:51.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.164][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.166][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:51.167][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:51.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.169][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.171][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:51.172][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:51.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.174][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.175][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:51.177][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:51.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.179][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.180][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:51.182][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:51.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.184][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.185][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:51.187][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:51.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.189][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.190][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:51.191][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:51.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.194][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.195][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:51.196][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:51.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.199][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.200][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:51.201][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:51.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.204][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.205][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:51.206][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:51.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.208][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.210][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:51.211][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:51.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.213][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.215][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:51.216][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:51.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.218][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.219][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:51.221][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:51.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.223][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.224][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:51.226][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:51.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.228][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.229][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:51.231][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:51.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.233][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.234][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:51.236][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:51.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.238][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.239][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:51.241][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:51.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.243][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.244][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:51.245][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:51.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.248][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.249][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:51.250][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:51.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.253][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.254][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:51.256][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:51.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.258][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.259][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:51.260][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:51.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.263][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.264][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:51.265][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:51.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.267][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.269][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:51.270][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:51.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.272][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.273][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:51.275][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:51.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.277][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.278][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:51.280][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:51.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.282][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.283][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:51.284][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:51.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.287][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.288][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:51.289][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:51.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.291][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.293][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:51.294][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:51.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.296][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.297][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:51.299][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:51.301][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:51.303][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:51.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.305][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.306][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:51.308][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:51.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.310][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.311][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:51.313][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:51.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.315][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.316][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:51.317][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:51.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.320][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.321][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:51.322][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:51.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.325][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.326][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:51.327][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:51.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.330][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.331][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:51.332][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:51.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.335][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.336][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:51.337][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:51.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.346][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.348][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:51.349][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:51.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.352][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.353][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:51.355][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:51.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.357][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.358][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:51.359][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:51.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.362][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.363][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:51.364][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:51.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.367][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.368][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:51.369][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:51.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.372][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.373][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:51.374][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:51.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.377][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.378][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:51.379][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:51.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.382][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.383][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:51.384][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:51.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.387][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.388][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-07 16:03:51.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:51.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:51.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:51.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:51.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:51.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:51.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.405][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:51.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:51.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.410][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:51.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:51.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.415][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:51.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:51.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.420][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:51.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:51.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.425][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:51.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:51.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:51.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:51.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.435][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:51.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:51.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:51.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:51.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.445][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:51.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:51.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:51.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:51.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:51.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:51.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.461][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:51.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:51.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:51.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:51.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.471][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:51.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:51.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.476][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:51.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:51.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.481][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:51.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:51.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.486][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:51.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:51.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.491][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:51.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:51.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.496][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:51.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:51.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.501][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:51.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:51.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.506][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:51.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:51.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.511][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:51.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:51.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.516][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:51.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:51.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.521][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:51.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:51.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.526][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:51.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:51.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.531][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:51.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:51.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.536][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:51.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:51.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.542][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:51.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:51.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:51.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:51.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.551][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:51.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:51.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.557][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:51.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:51.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:51.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:51.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.567][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:51.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:51.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.572][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:51.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:51.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.577][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:51.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:51.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.582][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:51.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:51.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.587][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:51.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:51.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.592][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:51.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:51.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.597][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:51.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:51.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.602][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:51.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:51.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.607][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:51.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:51.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.612][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:51.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:51.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.617][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:51.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:51.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.622][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:51.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:51.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.627][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:51.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:51.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.644][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172414169, 3-(2-methoxyphenyl)-2,2-dimethyl-cyclopropanecarbaldehyde, 3-(2-methoxyphenyl)-2,2-dimethyl-1-cyclopropanecarboxaldehyde, 3-(2-methoxyphenyl)-2,2-dimethylcyclopropane-1-carbaldehyde, 3-(2-methoxyphenyl)-2,2-dimethyl-cyclopropane-1-carbaldehyde, ...].
biodb.DEBUG[2024-12-07 16:03:51.645][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:51.646][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:03:51.651][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:51.652][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:51.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:51.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:51.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:51.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:51.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:51.671][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-12-07 16:03:51.675][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:03:51.677][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-12-07 16:03:51.678][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:51.680][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-12-07 16:03:51.682][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:03:51.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:51.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:51.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:51.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:51.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:51.695][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:51.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:51.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:51.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:51.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:51.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:51.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.707][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:51.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:51.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.712][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:51.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:51.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:51.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:51.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.722][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:51.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:51.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.727][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:51.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:51.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.732][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:51.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:51.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.737][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:51.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:51.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.742][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:51.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:51.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.747][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:51.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:51.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.759][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:51.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:51.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.764][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:51.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:51.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.769][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:51.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:51.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.774][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:51.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:51.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.779][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:51.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:51.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.784][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:51.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:51.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.789][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:51.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:51.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.794][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:51.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:51.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.800][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:51.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:51.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.805][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:51.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:51.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:51.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:51.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:51.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:51.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:51.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:51.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.825][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:51.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:51.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.830][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:51.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:51.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.835][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:51.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:51.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.840][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:51.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:51.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.845][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:51.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:51.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.850][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:51.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:51.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.855][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:51.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:51.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.860][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:51.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:51.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.865][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:51.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:51.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.870][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:51.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:51.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.875][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:51.877][private$selectFields]
biodb.TRACE[2024-12-07 16:03:51.878][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:51.879][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:51.880][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:51.881][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:51.883][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:51.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.885][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.886][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:51.888][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:51.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.890][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.891][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:51.893][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:51.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.895][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.896][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:51.898][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:51.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.900][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.901][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:51.903][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:51.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.905][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.906][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:51.908][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:51.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.910][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.911][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:51.913][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:51.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.915][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.916][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:51.918][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:51.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.920][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.921][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:51.923][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:51.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.925][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.926][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:51.928][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:51.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.930][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.931][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:51.932][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:51.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.935][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.936][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:51.937][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:51.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.940][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.941][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:51.942][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:51.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.944][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.946][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:51.947][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:51.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.949][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.951][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:51.952][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:51.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.954][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.956][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:51.957][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:51.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.959][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.960][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:51.962][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:51.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.964][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.965][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:51.966][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:51.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.969][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.970][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:51.971][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:51.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.974][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.975][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:51.976][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:51.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.978][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.979][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:51.981][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:51.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.983][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.984][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:51.985][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:51.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.988][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.989][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:51.990][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:51.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.993][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.994][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:51.995][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:51.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:51.997][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:51.998][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:52.000][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:52.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.002][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.003][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:52.005][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:52.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.007][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.008][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:52.009][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:52.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.012][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.013][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:52.014][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:52.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.016][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.018][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:52.019][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:52.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.021][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.022][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:52.024][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:52.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.026][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.027][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:52.028][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:52.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.031][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.032][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:52.033][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:52.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.035][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.037][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:52.038][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:52.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.040][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.041][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:52.043][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:52.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.045][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.046][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:52.047][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:52.049][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:52.050][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:52.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.052][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.053][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:52.055][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:52.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.057][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.058][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:52.059][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:52.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.062][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.063][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:52.064][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:52.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.066][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.068][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:52.069][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:52.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.071][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.072][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:52.074][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:52.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.076][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.077][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:52.078][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:52.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.081][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.082][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:52.083][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:52.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.085][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.087][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:52.088][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:52.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.090][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.091][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:52.093][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:52.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.095][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.096][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:52.097][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:52.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.100][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.101][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:52.102][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:52.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.104][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.106][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:52.107][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:52.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.109][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.110][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:52.112][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:52.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.114][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.115][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:52.116][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:52.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.119][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.120][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:52.121][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:52.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.123][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.125][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-07 16:03:52.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:52.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:52.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:52.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:52.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:52.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:52.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:52.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:52.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.145][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:52.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:52.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.150][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:52.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:52.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:52.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:52.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.168][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:52.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:52.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.172][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:52.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:52.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.177][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:52.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:52.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.182][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:52.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:52.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.187][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:52.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:52.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.192][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:52.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:52.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.197][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:52.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:52.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:52.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:52.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.207][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:52.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:52.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:52.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:52.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.217][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:52.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:52.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.222][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:52.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:52.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.227][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:52.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:52.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.232][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:52.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:52.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.237][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:52.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:52.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.242][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:52.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:52.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.246][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:52.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:52.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.251][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:52.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:52.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.256][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:52.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:52.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.261][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:52.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:52.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.266][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:52.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:52.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.271][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:52.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:52.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.276][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:52.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:52.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.281][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:52.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:52.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.286][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:52.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:52.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:52.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:52.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:52.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:52.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.300][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:52.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:52.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:52.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:52.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.310][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:52.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:52.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.315][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:52.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:52.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.320][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:52.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:52.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.325][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:52.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:52.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.330][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:52.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:52.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.334][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:52.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:52.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.339][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:52.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:52.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.344][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:52.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:52.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.349][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:52.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:52.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.354][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:52.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:52.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.359][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:52.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:52.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.364][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:52.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:52.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.380][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172420161, 1-chloro-4-(pent-4-enylsulfanylmethyl)benzene, 1-chloro-4-[(pent-4-enylthio)methyl]benzene, 1-chloro-4-(pent-4-enylsulfanylmethyl)benzene, 1-chloranyl-4-(pent-4-enylsulfanylmethyl)benzene, ...].
biodb.DEBUG[2024-12-07 16:03:52.381][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:52.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:52.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:52.390][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:52.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:52.392][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:52.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:52.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:52.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:52.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:52.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:52.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.404][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:52.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:52.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:52.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:52.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.414][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:52.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:52.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:52.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:52.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:52.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:52.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:52.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:52.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:52.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:52.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.438][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:52.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:52.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.443][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:52.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:52.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:52.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:52.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.452][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:52.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:52.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.457][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:52.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:52.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.462][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:52.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:52.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.467][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:52.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:52.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.472][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:52.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:52.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.477][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:52.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:52.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.481][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:52.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:52.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.486][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:52.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:52.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:52.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:52.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.496][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:52.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:52.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:52.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:52.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:52.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:52.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.510][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:52.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:52.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.515][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:52.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:52.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.520][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:52.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:52.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.525][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:52.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:52.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.530][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:52.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:52.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.535][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:52.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:52.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.539][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:52.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:52.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.544][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:52.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:52.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.549][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:52.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:52.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.561][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:52.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:52.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.567][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:52.568][private$selectFields]
biodb.TRACE[2024-12-07 16:03:52.569][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:52.570][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:52.571][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:52.573][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:52.574][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:52.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.576][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.577][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:52.579][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:52.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.581][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.582][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:52.584][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:52.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.586][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.587][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:52.588][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:52.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.591][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.592][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:52.593][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:52.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.596][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.597][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:52.598][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:52.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.601][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.602][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:52.603][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:52.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.606][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.607][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:52.608][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:52.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.610][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.612][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:52.613][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:52.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.615][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.617][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:52.618][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:52.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.620][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.621][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:52.623][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:52.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.625][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.626][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:52.627][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:52.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.630][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.631][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:52.632][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:52.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.635][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.636][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:52.637][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:52.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.639][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.641][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:52.642][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:52.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.644][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.646][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:52.647][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:52.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.649][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.650][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:52.652][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:52.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.654][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.655][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:52.657][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:52.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.659][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.660][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:52.661][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:52.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.664][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.665][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:52.666][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:52.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.669][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.670][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:52.671][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:52.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.673][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.675][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:52.676][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:52.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.678][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.679][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:52.681][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:52.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.683][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.684][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:52.686][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:52.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.688][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.689][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:52.690][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:52.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.693][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.694][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:52.695][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:52.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.697][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.699][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:52.700][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:52.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.702][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.703][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:52.705][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:52.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.707][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.708][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:52.710][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:52.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.712][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.713][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:52.714][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:52.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.717][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.718][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:52.719][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:52.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.722][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.723][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:52.724][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:52.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.726][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.728][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:52.729][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:52.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.731][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.732][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:52.734][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:52.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.736][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.737][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:52.738][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:52.740][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:52.741][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:52.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.743][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.744][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:52.746][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:52.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.748][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.749][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:52.751][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:52.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.753][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.754][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:52.755][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:52.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.758][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.759][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:52.760][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:52.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.763][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.764][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:52.765][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:52.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.768][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.769][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:52.770][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:52.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.773][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.774][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:52.775][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:52.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.778][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.779][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:52.780][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:52.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.783][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.784][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:52.785][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:52.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.787][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.789][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:52.790][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:52.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.792][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.793][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:52.795][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:52.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.797][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.798][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:52.799][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:52.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.802][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.803][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:52.804][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:52.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.806][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.808][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:52.809][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:52.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.811][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.812][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:52.814][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:52.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.816][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.817][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-07 16:03:52.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:52.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:52.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:52.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:52.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:52.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:52.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.833][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:52.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:52.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:52.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:52.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.843][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:52.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:52.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:52.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:52.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.853][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:52.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:52.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:52.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:52.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.863][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:52.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:52.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.868][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:52.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:52.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.873][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:52.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:52.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.878][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:52.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:52.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.883][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:52.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:52.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.887][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:52.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:52.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.892][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:52.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:52.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.897][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:52.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:52.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.902][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:52.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:52.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.907][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:52.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:52.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.912][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:52.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:52.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.917][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:52.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:52.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.922][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:52.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:52.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.927][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:52.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:52.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.932][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:52.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:52.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.937][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:52.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:52.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:52.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:52.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.946][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:52.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:52.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.962][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:52.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:52.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.967][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:52.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:52.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.973][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:52.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:52.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:52.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:52.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:52.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:52.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:52.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:52.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:52.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:52.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:52.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:52.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:53.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:53.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:53.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:53.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.009][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:53.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:53.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.014][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:53.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:53.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.019][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:53.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:53.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.024][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:53.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:53.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.029][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:53.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:53.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.034][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:53.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:53.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.039][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:53.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:53.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.044][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:53.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:53.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.049][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:53.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:53.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.054][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:53.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:53.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.059][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:53.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:53.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.064][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:53.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:53.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.080][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172416872, 4-phenylthieno[2,3-b]pyridin-3-amine, 4-phenyl-3-thieno[2,3-b]pyridinamine, 4-phenylthieno[2,3-b]pyridin-3-amine, 4-phenylthieno[2,3-b]pyridin-3-amine, ...].
biodb.DEBUG[2024-12-07 16:03:53.081][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:53.082][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:53.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:53.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:53.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:53.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:53.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:53.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:53.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:53.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:53.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:53.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.104][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:53.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:53.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:53.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:53.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:53.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:53.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.118][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:53.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:53.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.123][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:53.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:53.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.128][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:53.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:53.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:53.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:53.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:53.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:53.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.142][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:53.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:53.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:53.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:53.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.152][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:53.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:53.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.157][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:53.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:53.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.162][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:53.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:53.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:53.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:53.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.171][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:53.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:53.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:53.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:53.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.181][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:53.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:53.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.186][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:53.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:53.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:53.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:53.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:53.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:53.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:53.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:53.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:53.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:53.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.210][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:53.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:53.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.215][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:53.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:53.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.220][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:53.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:53.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.224][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:53.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:53.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.229][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:53.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:53.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.234][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:53.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:53.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.239][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:53.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:53.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.244][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:53.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:53.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.249][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:53.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:53.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.253][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:53.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:53.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.258][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:53.259][private$selectFields]
biodb.TRACE[2024-12-07 16:03:53.260][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:03:53.262][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:03:53.263][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:53.264][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:53.265][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:53.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.268][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.269][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:53.270][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:53.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.272][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.274][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:53.275][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:53.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.277][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.278][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:53.280][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:53.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.282][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.283][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:53.284][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:53.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.287][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.288][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:53.289][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:53.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.291][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.293][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:53.294][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:53.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.296][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.297][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:53.299][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:53.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.301][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.302][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:53.303][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:53.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.306][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.307][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:53.308][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:53.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.310][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.312][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:53.313][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:53.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.315][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.316][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:53.318][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:53.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.320][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.321][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:53.322][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:53.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.325][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.326][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:53.327][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:53.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.329][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.330][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:53.332][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:53.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.334][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.335][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:53.337][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:53.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.339][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.340][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:53.341][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:53.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.344][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.345][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:53.346][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:53.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.348][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.349][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:53.351][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:53.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.353][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.360][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:53.362][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:53.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.365][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.366][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:53.368][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:53.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.370][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.371][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:53.373][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:53.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.375][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.376][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:53.377][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:53.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.380][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.381][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:53.382][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:53.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.384][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.386][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:53.387][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:53.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.389][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.390][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:53.392][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:53.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.394][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.395][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:53.396][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:53.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.399][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.400][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:53.401][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:53.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.404][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.405][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:53.406][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:53.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.408][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.410][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:53.411][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:53.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.413][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.414][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:53.416][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:53.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.418][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.419][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:53.420][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:53.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.423][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.424][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:53.425][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:53.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.428][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.429][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:03:53.430][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:03:53.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.432][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.434][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:53.435][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-12-07 16:03:53.436][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:53.437][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:53.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.440][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.441][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:53.442][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:53.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.444][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.446][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:53.447][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:53.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.449][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.450][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:53.452][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:53.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.454][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.455][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:53.457][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:53.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.459][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.460][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:53.461][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:53.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.464][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.465][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:53.466][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:53.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.468][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.470][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:53.471][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:53.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.473][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.474][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:53.476][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:53.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.478][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.479][ef$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:53.480][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:53.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.483][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.484][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:53.485][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:53.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.487][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.489][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:53.490][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:53.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.492][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.493][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:53.495][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:53.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.497][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.498][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:53.499][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:53.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.502][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.503][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:53.504][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:53.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.506][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.508][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:53.509][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:53.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.511][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.513][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-12-07 16:03:53.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:53.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:53.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:53.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:53.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:53.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:53.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.529][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:53.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:53.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:53.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:53.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.538][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:53.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-12-07 16:03:53.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:53.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:53.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:53.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:53.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.553][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:53.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-12-07 16:03:53.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.558][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:53.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:53.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.563][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:53.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:53.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.568][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:53.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-12-07 16:03:53.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.573][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:53.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:53.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.577][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:53.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:53.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.582][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:53.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-12-07 16:03:53.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.587][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:53.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:53.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.592][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:53.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:53.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:53.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-12-07 16:03:53.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.602][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:53.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:53.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.607][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:53.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:53.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.612][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:03:53.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:03:53.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.617][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:53.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:53.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.621][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:53.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:53.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.626][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:03:53.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:03:53.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.631][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:53.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:53.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:53.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:53.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.641][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:03:53.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:03:53.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.646][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:53.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:53.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.651][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:53.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:53.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.656][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-12-07 16:03:53.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-12-07 16:03:53.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:53.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:53.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:53.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:53.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.671][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:53.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:03:53.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:53.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:53.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:53.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:53.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.685][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:53.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:03:53.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.690][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:53.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:53.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.694][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:53.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:53.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.699][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:03:53.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:03:53.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.703][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:53.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:53.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.708][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:53.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:53.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.712][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:53.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:53.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.717][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:53.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:53.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.722][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:53.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:53.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.727][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:53.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-12-07 16:03:53.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.732][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:53.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:53.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.736][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:53.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:53.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.741][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:53.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-12-07 16:03:53.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.765][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172416854, 1-chloro-1,1-difluoro-5,6-dimethyl-heptane-2,4-dione, 1-chloro-1,1-difluoro-5,6-dimethylheptane-2,4-dione, 1-chloro-1,1-difluoro-5,6-dimethylheptane-2,4-dione, 1-chloranyl-1,1-bis(fluoranyl)-5,6-dimethyl-heptane-2,4-dione, ...].
biodb.DEBUG[2024-12-07 16:03:53.766][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:03:53.767][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-07 16:03:53.775][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:53.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:53.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:53.780][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:53.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:03:53.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:53.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-07 16:03:53.789][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-12-07 16:03:53.790][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.comp from the request scheduler
biodb.INFO [2024-12-07 16:03:53.791][self$deleteConn] Connector "ncbi.pubchem.comp" deleted.
biodb.DEBUG[2024-12-07 16:03:53.793][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-12-07 16:03:53.794][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:53.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:53.796][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:53.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:53.798][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:53.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-12-07 16:03:53.803][biodb::testContext]
biodb.INFO [2024-12-07 16:03:53.804][biodb::testContext] ********************************************************************************
biodb.INFO [2024-12-07 16:03:53.806][biodb::testContext] Test context - Pubchem Subst long tests
biodb.INFO [2024-12-07 16:03:53.807][biodb::testContext] ********************************************************************************
biodb.INFO [2024-12-07 16:03:53.808][biodb::testContext]
biodb.INFO [2024-12-07 16:03:53.810][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-12-07 16:03:53.812][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-12-07 16:03:53.817][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-07 16:03:53.818][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-12-07 16:03:53.820][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-12-07 16:03:53.821][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:53.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:53.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:53.824][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-12-07 16:03:53.825][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-12-07 16:03:53.826][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:53.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:53.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:53.830][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-12-07 16:03:53.831][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-12-07 16:03:53.832][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:53.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:53.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:53.835][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-12-07 16:03:53.836][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-12-07 16:03:53.838][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-12-07 16:03:53.839][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:53.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:53.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:53.842][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-12-07 16:03:53.843][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-12-07 16:03:53.845][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-12-07 16:03:53.846][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:53.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:53.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:53.849][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-12-07 16:03:53.850][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-12-07 16:03:53.851][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:53.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:53.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:53.854][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-12-07 16:03:53.856][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-12-07 16:03:53.857][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-12-07 16:03:53.858][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:53.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:53.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:53.861][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-12-07 16:03:53.863][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-12-07 16:03:53.864][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:53.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:53.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:53.867][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-12-07 16:03:53.868][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-12-07 16:03:53.870][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-12-07 16:03:53.871][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:53.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:53.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:53.874][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-12-07 16:03:53.875][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-12-07 16:03:53.876][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-12-07 16:03:53.878][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-12-07 16:03:53.879][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-12-07 16:03:53.880][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-12-07 16:03:53.881][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:53.882][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:53.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:53.884][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-12-07 16:03:53.886][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-12-07 16:03:53.887][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:53.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:53.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:53.890][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-12-07 16:03:53.891][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-12-07 16:03:53.893][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:53.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:53.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:53.896][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-12-07 16:03:53.897][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-12-07 16:03:53.898][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:53.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:53.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:53.902][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-12-07 16:03:53.903][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-12-07 16:03:53.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:53.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:53.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:53.907][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-12-07 16:03:53.909][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-12-07 16:03:53.910][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:53.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:53.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:53.913][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-12-07 16:03:53.914][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-12-07 16:03:53.924][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-12-07 16:03:53.926][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:53.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:53.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:53.929][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-12-07 16:03:53.930][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-12-07 16:03:53.932][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-12-07 16:03:53.933][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:53.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:53.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:53.936][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-12-07 16:03:53.938][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-07 16:03:53.940][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-12-07 16:03:53.941][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:53.942][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:03:53.943][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:53.945][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:03:53.946][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-07 16:03:53.947][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-07 16:03:53.948][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-12-07 16:03:53.950][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:03:53.951][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:53.952][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-12-07 16:03:53.953][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:03:53.955][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:03:53.956][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:53.957][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-07 16:03:53.957][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-07 16:03:53.957][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-07 16:03:53.957][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-12-07 16:03:53.957][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-12-07 16:03:53.958][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-07 16:03:53.960][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:03:53.961][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:03:53.962][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:03:53.963][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:03:53.964][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:03:53.966][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:03:53.967][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:03:53.968][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:03:53.969][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:03:53.970][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-07 16:03:53.972][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:03:53.973][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-12-07 16:03:53.975][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-07 16:03:53.976][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-12-07 16:03:53.978][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:53.979][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:03:53.980][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:53.981][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:03:53.983][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-07 16:03:53.984][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-07 16:03:53.985][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-12-07 16:03:53.986][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:03:53.988][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:53.989][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-12-07 16:03:53.990][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:03:53.991][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:03:53.992][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:53.994][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-07 16:03:53.994][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-07 16:03:53.994][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-07 16:03:53.994][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-12-07 16:03:53.994][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-12-07 16:03:53.995][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-07 16:03:53.996][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:03:53.997][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:03:53.999][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:03:54.000][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:03:54.001][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:03:54.002][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:03:54.003][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:03:54.004][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:03:54.006][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:03:54.007][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-07 16:03:54.008][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:03:54.009][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-12-07 16:03:54.012][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:54.013][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-12-07 16:03:54.014][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:54.015][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:03:54.017][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:54.018][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:03:54.019][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-07 16:03:54.020][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-07 16:03:54.021][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-12-07 16:03:54.023][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:03:54.024][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-12-07 16:03:54.025][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-12-07 16:03:54.026][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:03:54.028][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:03:54.029][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:54.030][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:03:54.031][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-07 16:03:54.033][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:03:54.034][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:03:54.035][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:03:54.036][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:03:54.037][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:03:54.038][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:03:54.040][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:03:54.041][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:03:54.042][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:03:54.043][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-07 16:03:54.044][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:03:54.046][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-12-07 16:03:54.048][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:54.049][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-12-07 16:03:54.050][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:54.052][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:03:54.053][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:54.054][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:03:54.055][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-07 16:03:54.057][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-07 16:03:54.058][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-12-07 16:03:54.059][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:03:54.061][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-12-07 16:03:54.062][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-12-07 16:03:54.063][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:03:54.064][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:03:54.066][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:54.067][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:03:54.068][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-07 16:03:54.069][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:03:54.070][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:03:54.072][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:03:54.073][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:03:54.074][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:03:54.075][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:03:54.076][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:03:54.078][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:03:54.079][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:03:54.080][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-07 16:03:54.081][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:03:54.083][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-07 16:03:54.084][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:54.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:54.086][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:54.087][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:54.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:54.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:54.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:54.092][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:54.093][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:54.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:54.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:54.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:54.097][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:54.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:54.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:54.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:54.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:54.103][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:54.104][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:54.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:54.106][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:54.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:54.108][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:54.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:54.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:54.112][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:54.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:54.114][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:54.115][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:54.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:54.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:54.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:54.120][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:54.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:54.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:54.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:54.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:54.125][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:54.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:54.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:54.128][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:54.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:54.131][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:54.132][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:54.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:54.134][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:54.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:54.136][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:54.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:54.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:54.139][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:54.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:54.142][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:54.143][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:54.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:54.145][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:54.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:54.147][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:54.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:54.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:54.151][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:54.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:54.153][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:54.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:54.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:54.156][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:54.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:54.166][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:54.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:54.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:54.170][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:54.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:54.173][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:54.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:54.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:54.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:54.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:54.179][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:54.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:54.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:54.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:54.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:54.184][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:54.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:54.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:54.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:54.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:54.190][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-12-07 16:03:54.192][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-12-07 16:03:54.194][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-12-07 16:03:54.196][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-12-07 16:03:54.197][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-12-07 16:03:54.199][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-12-07 16:03:54.201][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-12-07 16:03:54.203][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-12-07 16:03:54.205][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-12-07 16:03:54.207][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-12-07 16:03:54.209][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-12-07 16:03:54.211][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-12-07 16:03:54.212][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-12-07 16:03:54.214][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-12-07 16:03:54.216][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-12-07 16:03:54.217][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-12-07 16:03:54.219][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-12-07 16:03:54.221][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-12-07 16:03:54.223][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-12-07 16:03:54.224][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-12-07 16:03:54.226][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-12-07 16:03:54.228][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-12-07 16:03:54.230][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-12-07 16:03:54.231][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-12-07 16:03:54.233][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-12-07 16:03:54.235][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-12-07 16:03:54.237][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-12-07 16:03:54.238][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-12-07 16:03:54.240][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-12-07 16:03:54.242][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-12-07 16:03:54.244][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-12-07 16:03:54.245][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-12-07 16:03:54.247][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-12-07 16:03:54.249][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-12-07 16:03:54.250][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-12-07 16:03:54.252][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-12-07 16:03:54.254][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-12-07 16:03:54.256][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-12-07 16:03:54.257][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-12-07 16:03:54.259][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-12-07 16:03:54.261][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-12-07 16:03:54.263][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-12-07 16:03:54.264][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-12-07 16:03:54.266][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-12-07 16:03:54.268][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-12-07 16:03:54.270][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-12-07 16:03:54.271][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-12-07 16:03:54.273][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-12-07 16:03:54.275][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-12-07 16:03:54.277][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-12-07 16:03:54.278][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-12-07 16:03:54.280][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-12-07 16:03:54.282][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-12-07 16:03:54.283][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-12-07 16:03:54.285][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-12-07 16:03:54.287][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-12-07 16:03:54.289][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-12-07 16:03:54.290][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-12-07 16:03:54.292][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-12-07 16:03:54.294][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-12-07 16:03:54.295][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-12-07 16:03:54.297][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-12-07 16:03:54.299][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-12-07 16:03:54.301][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-12-07 16:03:54.302][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-12-07 16:03:54.304][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-12-07 16:03:54.306][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-12-07 16:03:54.308][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-12-07 16:03:54.309][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-12-07 16:03:54.311][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-12-07 16:03:54.313][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-12-07 16:03:54.315][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-12-07 16:03:54.316][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-12-07 16:03:54.318][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-12-07 16:03:54.320][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-12-07 16:03:54.322][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-12-07 16:03:54.323][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-12-07 16:03:54.325][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-12-07 16:03:54.327][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-12-07 16:03:54.328][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-12-07 16:03:54.330][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-12-07 16:03:54.332][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-12-07 16:03:54.334][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-12-07 16:03:54.335][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-12-07 16:03:54.337][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2024-12-07 16:03:54.339][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-07 16:03:54.340][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:54.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:54.342][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:54.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:54.345][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:54.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:54.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:54.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:54.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:54.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:54.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:54.355][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:54.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:54.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:54.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:54.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:54.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:54.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:54.364][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:54.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:54.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:54.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:54.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:54.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:54.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:54.371][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:54.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:54.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:54.375][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:54.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:54.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:54.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:54.382][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:54.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:54.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:54.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:54.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:54.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:54.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:54.395][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:54.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:54.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:54.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:54.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:54.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:54.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:54.408][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:54.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:54.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:54.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:54.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:54.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:54.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:54.421][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:54.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:54.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:54.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:54.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:54.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:54.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:54.434][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:54.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:54.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:54.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:54.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:54.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:54.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:54.449][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:54.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:54.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:54.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:54.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:54.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:54.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:54.463][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:54.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:54.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:54.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:54.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:54.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:54.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:54.478][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:54.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:54.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:54.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:54.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:54.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:54.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:54.492][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:54.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:54.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:54.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:54.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:54.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:54.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:54.505][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:54.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:54.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:54.510][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:54.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:54.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:54.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:54.517][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:54.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:54.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:54.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:54.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:54.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:54.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:54.528][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:54.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:54.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:54.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:54.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:54.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:54.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:54.538][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:03:54.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:54.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:54.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:54.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:54.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:54.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:03:54.549][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-12-07 16:03:54.551][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-12-07 16:03:54.553][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:54.555][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-12-07 16:03:54.557][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:54.559][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:03:54.560][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:54.561][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:03:54.563][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:54.564][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-07 16:03:54.565][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-12-07 16:03:54.566][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:03:54.568][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:54.569][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-12-07 16:03:54.570][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:03:54.571][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-12-07 16:03:54.571][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-12-07 16:03:54.572][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-07 16:03:54.574][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:03:54.575][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-12-07 16:03:54.576][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:03:54.577][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:03:54.578][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:03:54.580][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:03:54.581][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:03:54.582][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:03:54.583][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-12-07 16:03:54.583][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-12-07 16:03:54.584][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:03:54.585][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:03:54.586][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:54.588][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:03:54.589][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-12-07 16:03:54.591][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:54.593][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-12-07 16:03:54.594][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:54.595][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:03:54.596][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:54.598][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:03:54.599][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:54.600][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-07 16:03:54.601][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-12-07 16:03:54.603][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:03:54.604][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:54.605][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-12-07 16:03:54.606][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:03:54.608][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-12-07 16:03:54.608][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-12-07 16:03:54.608][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-12-07 16:03:54.608][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-12-07 16:03:54.608][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-12-07 16:03:54.608][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-12-07 16:03:54.609][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-07 16:03:54.610][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-07 16:03:54.611][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-12-07 16:03:54.613][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:03:54.614][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:03:54.615][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:03:54.616][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:03:54.617][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:03:54.619][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:03:54.620][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-07 16:03:54.620][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-12-07 16:03:54.621][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:03:54.622][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:03:54.623][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:54.625][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:03:54.626][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-12-07 16:03:54.629][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-07 16:03:54.630][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-12-07 16:03:54.638][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:54.640][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:03:54.641][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:54.643][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:03:54.644][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:54.645][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-07 16:03:54.647][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-12-07 16:03:54.648][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:03:54.649][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:54.651][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-12-07 16:03:54.652][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:03:54.653][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-12-07 16:03:54.653][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:03:54.653][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:03:54.653][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:03:54.653][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:03:54.653][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:03:54.653][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:03:54.653][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:03:54.653][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:03:54.653][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:03:54.653][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-12-07 16:03:54.653][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:03:54.653][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:03:54.653][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-12-07 16:03:54.655][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-07 16:03:54.656][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-07 16:03:54.656][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-07 16:03:54.656][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-07 16:03:54.657][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-12-07 16:03:54.658][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:03:54.659][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:03:54.661][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:03:54.662][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:03:54.663][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:03:54.664][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:03:54.665][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-07 16:03:54.665][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-12-07 16:03:54.665][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-12-07 16:03:54.667][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:03:54.668][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:03:54.669][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:54.670][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-12-07 16:03:54.672][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-12-07 16:03:54.674][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:54.675][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-12-07 16:03:54.677][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:54.678][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:03:54.679][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:54.681][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:03:54.682][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:54.683][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-07 16:03:54.684][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-12-07 16:03:54.686][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:03:54.687][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:54.688][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-12-07 16:03:54.690][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:03:54.691][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-12-07 16:03:54.691][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-12-07 16:03:54.692][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-07 16:03:54.693][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:03:54.695][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-12-07 16:03:54.696][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:03:54.697][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:03:54.698][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:03:54.700][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:03:54.701][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:03:54.702][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:03:54.703][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-12-07 16:03:54.703][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-12-07 16:03:54.703][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-12-07 16:03:54.705][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:03:54.706][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:03:54.707][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-07 16:03:54.708][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-12-07 16:03:54.710][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-12-07 16:03:54.712][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-12-07 16:03:54.714][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-12-07 16:03:54.715][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-12-07 16:03:54.717][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-12-07 16:03:54.719][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-12-07 16:03:54.726][super$initialize] Initialize connector ncbi.pubchem.subst.
biodb.DEBUG[2024-12-07 16:03:54.727][super$initialize] Register connector ncbi.pubchem.subst with the request scheduler
biodb.DEBUG[2024-12-07 16:03:54.729][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.subst.
biodb.DEBUG[2024-12-07 16:03:54.731][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2024-12-07 16:03:54.732][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-12-07 16:03:54.733][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-12-07 16:03:54.735][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2024-12-07 16:03:54.737][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-12-07 16:03:54.738][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-12-07 16:03:54.739][rule$addConnector] Connector "ncbi.pubchem.subst" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-12-07 16:03:54.745][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.subst for database class ncbi.pubchem.subst .
biodb.INFO [2024-12-07 16:03:54.751][biodb::testThat]
biodb.INFO [2024-12-07 16:03:54.752][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-12-07 16:03:54.753][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:03:54.754][biodb::testThat]
biodb.TRACE[2024-12-07 16:03:54.758][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.subst-3-content.xml".
biodb.DEBUG[2024-12-07 16:03:54.759][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:03:54.763][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2024-12-07 16:03:54.765][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:54.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:54.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:54.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:54.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:54.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:54.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:54.781][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:54.782][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:54.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.784][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:54.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:54.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.791][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:54.793][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:54.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.795][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.797][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:54.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:54.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.802][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-12-07 16:03:54.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-12-07 16:03:54.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.807][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-12-07 16:03:54.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-12-07 16:03:54.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:54.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:54.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-12-07 16:03:54.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-12-07 16:03:54.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:54.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:54.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:54.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:54.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:54.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:54.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:54.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:54.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:54.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:54.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:54.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:54.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:54.852][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3.
biodb.TRACE[2024-12-07 16:03:54.854][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:03:54.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:03:54.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.859][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:03:54.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:03:54.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.864][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:03:54.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:03:54.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.869][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:03:54.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:03:54.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.874][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:03:54.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:03:54.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.879][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-07 16:03:54.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-07 16:03:54.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.884][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-07 16:03:54.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-07 16:03:54.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:54.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:54.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.900][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-12-07 16:03:54.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-12-07 16:03:54.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:54.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:54.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:54.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:54.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:54.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:54.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:54.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:54.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:54.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:54.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:54.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:54.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.942][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-12-07 16:03:54.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-12-07 16:03:54.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.947][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-12-07 16:03:54.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-12-07 16:03:54.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.952][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-12-07 16:03:54.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-12-07 16:03:54.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:54.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:54.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:54.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:54.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:54.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:54.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.980][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:54.981][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:54.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.983][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:54.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:54.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:54.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:54.999][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:55.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:55.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.004][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:55.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:55.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.009][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:55.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:55.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.014][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:55.016][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:55.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.018][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.019][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:55.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:55.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.034][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:55.035][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:55.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.038][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.044][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:55.045][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:55.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.048][ef$get] fields variable is a list.
biodb.INFO [2024-12-07 16:03:55.066][biodb::testThat]
biodb.INFO [2024-12-07 16:03:55.068][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-12-07 16:03:55.069][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:03:55.070][biodb::testThat]
biodb.DEBUG[2024-12-07 16:03:55.090][private$loadEntries] Creating entries from ids [1]: "3".
biodb.DEBUG[2024-12-07 16:03:55.092][conn$getEntryContent] Get PubChem Substance entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:03:55.095][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3".
biodb.TRACE[2024-12-07 16:03:55.097][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:03:55.099][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.subst-e80afa72f6aa7425ca0c72f99f7b9d75/3.xml".
biodb.DEBUG[2024-12-07 16:03:55.100][conn$getEntryContent] 1 PubChem Substance entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:03:55.101][self$createEntryFromContent] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:03:55.103][self$createEntryFromContent] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2024-12-07 16:03:55.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:03:55.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:55.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:55.113][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:55.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:55.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:55.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:03:55.120][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:55.121][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:55.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.123][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:55.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:55.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.130][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:55.131][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:55.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.133][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.135][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:55.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-12-07 16:03:55.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.140][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-12-07 16:03:55.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-12-07 16:03:55.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.145][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-12-07 16:03:55.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-12-07 16:03:55.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:55.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:55.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.155][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-12-07 16:03:55.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-12-07 16:03:55.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:55.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:55.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:55.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:55.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:55.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:55.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:55.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:55.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:55.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:55.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:03:55.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:03:55.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:03:55.190][self$createEntryFromContent] Accession numbers: 3.
biodb.TRACE[2024-12-07 16:03:55.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-12-07 16:03:55.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-12-07 16:03:55.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-12-07 16:03:55.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-12-07 16:03:55.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-12-07 16:03:55.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-12-07 16:03:55.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-07 16:03:55.215][biodb::testThat]
biodb.INFO [2024-12-07 16:03:55.216][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-12-07 16:03:55.217][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:03:55.218][biodb::testThat]
biodb.INFO [2024-12-07 16:03:55.226][biodb::testThat]
biodb.INFO [2024-12-07 16:03:55.227][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-12-07 16:03:55.229][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:03:55.230][biodb::testThat]
biodb.WARN [2024-12-07 16:03:55.234][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2024-12-07 16:03:55.238][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2024-12-07 16:03:55.249][biodb::testThat]
biodb.INFO [2024-12-07 16:03:55.250][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-12-07 16:03:55.251][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:03:55.252][biodb::testThat]
biodb.TRACE[2024-12-07 16:03:55.264][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:03:55.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:03:55.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.269][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:03:55.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:03:55.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.274][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:03:55.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:03:55.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.279][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:03:55.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:03:55.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.284][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:03:55.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:03:55.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.289][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-07 16:03:55.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-07 16:03:55.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.294][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-07 16:03:55.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-07 16:03:55.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.300][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:03:55.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:03:55.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.305][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-12-07 16:03:55.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-12-07 16:03:55.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.310][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:03:55.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-12-07 16:03:55.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.315][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:03:55.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:03:55.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.320][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:03:55.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:03:55.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.325][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-07 16:03:55.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-07 16:03:55.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:03:55.330][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-07 16:03:55.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-07 16:03:55.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:03:55.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-07 16:03:55.342][biodb::testThat]
biodb.INFO [2024-12-07 16:03:55.343][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-12-07 16:03:55.344][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:03:55.346][biodb::testThat]
biodb.INFO [2024-12-07 16:03:55.356][biodb::testThat]
biodb.INFO [2024-12-07 16:03:55.357][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-12-07 16:03:55.358][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:03:55.359][biodb::testThat]
biodb.INFO [2024-12-07 16:03:55.370][biodb::testThat]
biodb.INFO [2024-12-07 16:03:55.371][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-12-07 16:03:55.372][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:03:55.374][biodb::testThat]
biodb.DEBUG[2024-12-07 16:03:55.378][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/substance/3".
biodb.DEBUG[2024-12-07 16:03:55.525][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/substance/3.
biodb.INFO [2024-12-07 16:03:55.624][biodb::testThat]
biodb.INFO [2024-12-07 16:03:55.626][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-12-07 16:03:55.627][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:03:55.628][biodb::testThat]
biodb.DEBUG[2024-12-07 16:03:55.724][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?sid=3&t=l.
biodb.INFO [2024-12-07 16:03:55.871][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-12-07 16:03:55.873][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.subst from the request scheduler
biodb.INFO [2024-12-07 16:03:55.874][self$deleteConn] Connector "ncbi.pubchem.subst" deleted.
biodb.DEBUG[2024-12-07 16:03:55.875][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-12-07 16:03:55.877][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:03:55.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:03:55.879][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:03:55.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:03:55.881][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:03:55.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1028 ]

[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1028 ]
> 
> proc.time()
   user  system elapsed 
 55.673   2.191  89.643

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.10.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbNcbi/DESCRIPTION’ ... OK
* this is package ‘biodbNcbi’ version ‘1.10.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbNcbi’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.2Mb
  sub-directories of 1Mb or more:
    testref   7.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... WARNING
'library' or 'require' call not declared from: ‘biodbNci’
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/00check.log’
for details.

Installation output

biodbNcbi.Rcheck/00install.out

* installing *source* package ‘biodbNcbi’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbNcbi)