Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-08-13 17:40 -0400 (Tue, 13 Aug 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4758 |
palomino7 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4493 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4522 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4471 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1762/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
rhdf5filters 1.16.0 (landing page) Mike Smith
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
To the developers/maintainers of the rhdf5filters package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rhdf5filters.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: rhdf5filters |
Version: 1.16.0 |
Command: rm -rf rhdf5filters.buildbin-libdir && mkdir rhdf5filters.buildbin-libdir && E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL --build --library=rhdf5filters.buildbin-libdir rhdf5filters_1.16.0.tar.gz |
StartedAt: 2024-08-12 08:16:54 -0400 (Mon, 12 Aug 2024) |
EndedAt: 2024-08-12 08:19:43 -0400 (Mon, 12 Aug 2024) |
EllapsedTime: 169.2 seconds |
RetCode: 0 |
Status: OK |
PackageFile: rhdf5filters_1.16.0.zip |
PackageFileSize: 2.231 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf rhdf5filters.buildbin-libdir && mkdir rhdf5filters.buildbin-libdir && E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL --build --library=rhdf5filters.buildbin-libdir rhdf5filters_1.16.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'rhdf5filters' ... ** using staged installation ** libs using C compiler: 'gcc.exe (GCC) 13.2.0' make -C zstd make[1]: Entering directory '/e/biocbuild/bbs-3.19-bioc/tmpdir/Rtmp6Z3NZT/R.INSTALL221081e237d07/rhdf5filters/src/zstd' gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c common/debug.c -o common/debug.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c common/entropy_common.c -o common/entropy_common.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c common/error_private.c -o common/error_private.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c common/fse_decompress.c -o common/fse_decompress.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c common/pool.c -o common/pool.o -o common/pool.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c common/threading.c -o common/threading.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c common/xxhash.c -o common/xxhash.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c common/zstd_common.c -o common/zstd_common.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/fse_compress.c -o compress/fse_compress.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/hist.c -o compress/hist.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/huf_compress.c -o compress/huf_compress.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_compress.c -o compress/zstd_compress.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_compress_literals.c -o compress/zstd_compress_literals.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_compress_sequences.c -o compress/zstd_compress_sequences.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_compress_superblock.c -o compress/zstd_compress_superblock.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_double_fast.c -o compress/zstd_double_fast.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_fast.c -o compress/zstd_fast.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_lazy.c -o compress/zstd_lazy.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_ldm.c -o compress/zstd_ldm.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_opt.c -o compress/zstd_opt.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstdmt_compress.c -o compress/zstdmt_compress.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c decompress/huf_decompress.c -o decompress/huf_decompress.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c decompress/zstd_ddict.c -o decompress/zstd_ddict.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c decompress/zstd_decompress.c -o decompress/zstd_decompress.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c decompress/zstd_decompress_block.c -o decompress/zstd_decompress_block.o rm -f libzstd.a ar cq libzstd.a common/debug.o common/entropy_common.o common/error_private.o common/fse_decompress.o common/pool.o common/threading.o common/xxhash.o common/zstd_common.o compress/fse_compress.o compress/hist.o compress/huf_compress.o compress/zstd_compress.o compress/zstd_compress_literals.o compress/zstd_compress_sequences.o compress/zstd_compress_superblock.o compress/zstd_double_fast.o compress/zstd_fast.o compress/zstd_lazy.o compress/zstd_ldm.o compress/zstd_opt.o compress/zstdmt_compress.o decompress/huf_decompress.o decompress/zstd_ddict.o decompress/zstd_decompress.o decompress/zstd_decompress_block.o ranlib libzstd.a gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -shared H5Zzstd.c -lpthread -I"E:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include" \ -I. -Icommon libzstd.a -o libH5Zzstd.so make[1]: Leaving directory '/e/biocbuild/bbs-3.19-bioc/tmpdir/Rtmp6Z3NZT/R.INSTALL221081e237d07/rhdf5filters/src/zstd' make -C blosc make[1]: Entering directory '/e/biocbuild/bbs-3.19-bioc/tmpdir/Rtmp6Z3NZT/R.INSTALL221081e237d07/rhdf5filters/src/blosc' make -C lib/snappy-1.1.1 make[2]: Entering directory '/e/biocbuild/bbs-3.19-bioc/tmpdir/Rtmp6Z3NZT/R.INSTALL221081e237d07/rhdf5filters/src/blosc/lib/snappy-1.1.1' g++ -std=gnu++17 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -lpthread -I"E:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include" -c snappy.cc snappy.cc: In member function 'bool snappy::SnappyIOVecWriter::Append(const char*, size_t)': snappy.cc:1013:33: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] 1013 | if (curr_iov_index_ + 1 >= output_iov_count_) { | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ snappy.cc: In member function 'bool snappy::SnappyIOVecWriter::AppendFromSelf(size_t, size_t)': snappy.cc:1095:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] 1095 | if (curr_iov_index_ + 1 >= output_iov_count_) { | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ snappy.cc: At global scope: snappy.cc:567:13: warning: 'void snappy::ComputeTable()' defined but not used [-Wunused-function] 567 | static void ComputeTable() { | ^~~~~~~~~~~~ g++ -std=gnu++17 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -lpthread -I"E:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include" -c snappy-c.cc g++ -std=gnu++17 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -lpthread -I"E:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include" -c snappy-sinksource.cc g++ -std=gnu++17 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -lpthread -I"E:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include" -c snappy-stubs-internal.cc make[2]: Leaving directory '/e/biocbuild/bbs-3.19-bioc/tmpdir/Rtmp6Z3NZT/R.INSTALL221081e237d07/rhdf5filters/src/blosc/lib/snappy-1.1.1' make -C lib/lz4-1.9.4 make[2]: Entering directory '/e/biocbuild/bbs-3.19-bioc/tmpdir/Rtmp6Z3NZT/R.INSTALL221081e237d07/rhdf5filters/src/blosc/lib/lz4-1.9.4' gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lz4.c gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lz4hc.c make[2]: Leaving directory '/e/biocbuild/bbs-3.19-bioc/tmpdir/Rtmp6Z3NZT/R.INSTALL221081e237d07/rhdf5filters/src/blosc/lib/lz4-1.9.4' make -C lib/blosc-1.20.1 all make[2]: Entering directory '/e/biocbuild/bbs-3.19-bioc/tmpdir/Rtmp6Z3NZT/R.INSTALL221081e237d07/rhdf5filters/src/blosc/lib/blosc-1.20.1' gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -lpthread -I"E:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include" -I../lz4-1.9.4 -I../snappy-1.1.1 -I../../../zstd -c bitshuffle-generic.c bitshuffle-generic.c: In function 'blosc_internal_bshuf_trans_byte_elem_remainder': bitshuffle-generic.c:40:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes] 40 | } | ^ bitshuffle-generic.c: In function 'blosc_internal_bshuf_trans_byte_elem_scal': bitshuffle-generic.c:48:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes] 48 | } | ^ bitshuffle-generic.c: In function 'blosc_internal_bshuf_trans_bit_byte_remainder': bitshuffle-generic.c:85:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes] 85 | } | ^ bitshuffle-generic.c: In function 'blosc_internal_bshuf_trans_elem': bitshuffle-generic.c:109:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes] 109 | } | ^ bitshuffle-generic.c: In function 'blosc_internal_bshuf_trans_bitrow_eight': bitshuffle-generic.c:121:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes] 121 | } | ^ bitshuffle-generic.c: In function 'blosc_internal_bshuf_trans_bit_elem_scal': bitshuffle-generic.c:139:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes] 139 | } | ^ bitshuffle-generic.c: In function 'blosc_internal_bshuf_shuffle_bit_eightelem_scal': bitshuffle-generic.c:204:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes] 204 | } | ^ bitshuffle-generic.c: In function 'blosc_internal_bshuf_untrans_bit_elem_scal': bitshuffle-generic.c:220:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes] 220 | } | ^ gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -lpthread -I"E:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include" -I../lz4-1.9.4 -I../snappy-1.1.1 -I../../../zstd -c shuffle-generic.c shuffle-generic.c: In function 'blosc_internal_shuffle_generic': shuffle-generic.c:17:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes] 17 | } | ^ shuffle-generic.c: In function 'blosc_internal_unshuffle_generic': shuffle-generic.c:25:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes] 25 | } | ^ gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -lpthread -I"E:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include" -I../lz4-1.9.4 -I../snappy-1.1.1 -I../../../zstd -c shuffle.c shuffle.c: In function 'get_shuffle_implementation': shuffle.c:316:22: warning: unused variable 'cpu_features' [-Wunused-variable] 316 | blosc_cpu_features cpu_features = blosc_get_cpu_features(); | ^~~~~~~~~~~~ In file included from shuffle.c:12: shuffle-generic.h: At top level: shuffle-generic.h:61:13: warning: 'unshuffle_generic_inline' defined but not used [-Wunused-function] 61 | static void unshuffle_generic_inline(const size_t type_size, | ^~~~~~~~~~~~~~~~~~~~~~~~ shuffle-generic.h:32:13: warning: 'shuffle_generic_inline' defined but not used [-Wunused-function] 32 | static void shuffle_generic_inline(const size_t type_size, | ^~~~~~~~~~~~~~~~~~~~~~ shuffle.c: In function 'blosc_internal_shuffle': shuffle.c:390:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes] 390 | } | ^ shuffle.c: In function 'blosc_internal_unshuffle': shuffle.c:403:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes] 403 | } | ^ shuffle.c: In function 'blosc_internal_bitshuffle': shuffle.c:430:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes] 430 | } | ^ shuffle.c: In function 'blosc_internal_bitunshuffle': shuffle.c:457:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes] 457 | } | ^ gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -lpthread -I"E:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include" -I../lz4-1.9.4 -I../snappy-1.1.1 -I../../../zstd -c blosclz.c gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -lpthread -I"E:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include" -I../lz4-1.9.4 -I../snappy-1.1.1 -I../../../zstd -c blosc.c blosc.c:151:16: warning: 'g_atfork_registered' defined but not used [-Wunused-variable] 151 | static int32_t g_atfork_registered = 0; | ^~~~~~~~~~~~~~~~~~~ gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -lpthread -I"E:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include" -I../lz4-1.9.4 -I../snappy-1.1.1 -I../../../zstd -c fastcopy.c make[2]: Leaving directory '/e/biocbuild/bbs-3.19-bioc/tmpdir/Rtmp6Z3NZT/R.INSTALL221081e237d07/rhdf5filters/src/blosc/lib/blosc-1.20.1' rm -f libblosc.a ar cq libblosc.a lib/blosc-1.20.1/blosc.o lib/blosc-1.20.1/bitshuffle-generic.o lib/blosc-1.20.1/blosclz.o lib/blosc-1.20.1/shuffle.o lib/blosc-1.20.1/fastcopy.o lib/blosc-1.20.1/shuffle-generic.o lib/snappy-1.1.1/snappy.o lib/snappy-1.1.1/snappy-c.o lib/snappy-1.1.1/snappy-sinksource.o lib/snappy-1.1.1/snappy-stubs-internal.o lib/lz4-1.9.4/lz4.o lib/lz4-1.9.4/lz4hc.o ranlib libblosc.a g++ -std=gnu++17 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -shared -lpthread -I"E:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include" H5Zblosc.cpp \ -I./lib/blosc-1.20.1 ./libblosc.a ../zstd/libzstd.a -lz -o libH5Zblosc.so make[1]: Leaving directory '/e/biocbuild/bbs-3.19-bioc/tmpdir/Rtmp6Z3NZT/R.INSTALL221081e237d07/rhdf5filters/src/blosc' make -C bzip2 make[1]: Entering directory '/e/biocbuild/bbs-3.19-bioc/tmpdir/Rtmp6Z3NZT/R.INSTALL221081e237d07/rhdf5filters/src/bzip2' make -C bzip2-1.0.8 make[2]: Entering directory '/e/biocbuild/bbs-3.19-bioc/tmpdir/Rtmp6Z3NZT/R.INSTALL221081e237d07/rhdf5filters/src/bzip2/bzip2-1.0.8' gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -D_FILE_OFFSET_BITS=64 -c blocksort.c gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -D_FILE_OFFSET_BITS=64 -c huffman.c gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -D_FILE_OFFSET_BITS=64 -c crctable.c gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -D_FILE_OFFSET_BITS=64 -c randtable.c gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -D_FILE_OFFSET_BITS=64 -c compress.c gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -D_FILE_OFFSET_BITS=64 -c decompress.c gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -D_FILE_OFFSET_BITS=64 -c bzlib.c rm -f libbz2.a ar cq libbz2.a blocksort.o huffman.o crctable.o randtable.o compress.o decompress.o bzlib.o make[2]: Leaving directory '/e/biocbuild/bbs-3.19-bioc/tmpdir/Rtmp6Z3NZT/R.INSTALL221081e237d07/rhdf5filters/src/bzip2/bzip2-1.0.8' gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -shared H5Zbzip2.c -lpthread -I"E:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include" \ -Ibzip2-1.0.8 bzip2-1.0.8/libbz2.a -o libH5Zbz2.so make[1]: Leaving directory '/e/biocbuild/bbs-3.19-bioc/tmpdir/Rtmp6Z3NZT/R.INSTALL221081e237d07/rhdf5filters/src/bzip2' make -C lzf make[1]: Entering directory '/e/biocbuild/bbs-3.19-bioc/tmpdir/Rtmp6Z3NZT/R.INSTALL221081e237d07/rhdf5filters/src/lzf' make -C lzf make[2]: Entering directory '/e/biocbuild/bbs-3.19-bioc/tmpdir/Rtmp6Z3NZT/R.INSTALL221081e237d07/rhdf5filters/src/lzf/lzf' gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lzf_c.c gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lzf_d.c rm -f liblzf.a ar cq liblzf.a lzf_c.o lzf_d.o ranlib liblzf.a make[2]: Leaving directory '/e/biocbuild/bbs-3.19-bioc/tmpdir/Rtmp6Z3NZT/R.INSTALL221081e237d07/rhdf5filters/src/lzf/lzf' gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -shared H5Zlzf.c -lpthread -I"E:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include" \ -I./lzf/ ./lzf/liblzf.a -o libH5Zlzf.so make[1]: Leaving directory '/e/biocbuild/bbs-3.19-bioc/tmpdir/Rtmp6Z3NZT/R.INSTALL221081e237d07/rhdf5filters/src/lzf' make -C vbz make[1]: Entering directory '/e/biocbuild/bbs-3.19-bioc/tmpdir/Rtmp6Z3NZT/R.INSTALL221081e237d07/rhdf5filters/src/vbz' make -C third_party/streamvbyte make[2]: Entering directory '/e/biocbuild/bbs-3.19-bioc/tmpdir/Rtmp6Z3NZT/R.INSTALL221081e237d07/rhdf5filters/src/vbz/third_party/streamvbyte' gcc -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -Iinclude -c ./src/streamvbyte_decode.c In file included from ./src/streamvbyte_decode.c:25: ./src/streamvbyte_shuffle_tables_decode.h:22:16: warning: 'shuffleTable' defined but not used [-Wunused-variable] 22 | static uint8_t shuffleTable[256][16] = { | ^~~~~~~~~~~~ ./src/streamvbyte_shuffle_tables_decode.h:2:16: warning: 'lengthTable' defined but not used [-Wunused-variable] 2 | static uint8_t lengthTable[256] ={ | ^~~~~~~~~~~ gcc -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -Iinclude -c ./src/streamvbyte_encode.c In file included from ./src/streamvbyte_encode.c:25: ./src/streamvbyte_shuffle_tables_encode.h:93:16: warning: 'encodingShuffleTable' defined but not used [-Wunused-variable] 93 | static uint8_t encodingShuffleTable[256][16] = { | ^~~~~~~~~~~~~~~~~~~~ gcc -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -Iinclude -c ./src/streamvbytedelta_decode.c gcc -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -Iinclude -c ./src/streamvbytedelta_encode.c gcc -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -Iinclude -c ./src/streamvbyte_0124_encode.c gcc -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -Iinclude -c ./src/streamvbyte_0124_decode.c gcc -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -Iinclude -c ./src/streamvbyte_zigzag.c rm -f libstreamvbyte.a ar cq libstreamvbyte.a streamvbyte_decode.o streamvbyte_encode.o streamvbytedelta_decode.o streamvbytedelta_encode.o streamvbyte_0124_encode.o streamvbyte_0124_decode.o streamvbyte_zigzag.o ranlib libstreamvbyte.a make[2]: Leaving directory '/e/biocbuild/bbs-3.19-bioc/tmpdir/Rtmp6Z3NZT/R.INSTALL221081e237d07/rhdf5filters/src/vbz/third_party/streamvbyte' make -C vbz make[2]: Entering directory '/e/biocbuild/bbs-3.19-bioc/tmpdir/Rtmp6Z3NZT/R.INSTALL221081e237d07/rhdf5filters/src/vbz/vbz' g++ -std=gnu++17 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -lpthread -I"E:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include" -I../third_party/streamvbyte/include/ -I../third_party/ -I../../zstd/ -mssse3 -c vbz.cpp -o vbz.o g++ -std=gnu++17 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -lpthread -I"E:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include" -I../third_party/streamvbyte/include/ -I../third_party/ -I../../zstd/ -mssse3 -c v0/vbz_streamvbyte.cpp -o v0/vbz_streamvbyte.o g++ -std=gnu++17 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -lpthread -I"E:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include" -I../third_party/streamvbyte/include/ -I../third_party/ -I../../zstd/ -mssse3 -c v1/vbz_streamvbyte.cpp -o v1/vbz_streamvbyte.o make[2]: Leaving directory '/e/biocbuild/bbs-3.19-bioc/tmpdir/Rtmp6Z3NZT/R.INSTALL221081e237d07/rhdf5filters/src/vbz/vbz' rm -f libvbz.a ar cq libvbz.a vbz/vbz.o vbz/v0/vbz_streamvbyte.o vbz/v1/vbz_streamvbyte.o ranlib libvbz.a g++ -std=gnu++17 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -lpthread -I"E:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include" -shared vbz_plugin.cpp \ libvbz.a ../zstd/libzstd.a third_party/streamvbyte/libstreamvbyte.a -o libH5Zvbz.so make[1]: Leaving directory '/e/biocbuild/bbs-3.19-bioc/tmpdir/Rtmp6Z3NZT/R.INSTALL221081e237d07/rhdf5filters/src/vbz' mkdir -p "E:/biocbuild/bbs-3.19-bioc/meat/rhdf5filters.buildbin-libdir/00LOCK-rhdf5filters/00new/rhdf5filters/lib/x64/" cp blosc/libH5Zblosc.so "E:/biocbuild/bbs-3.19-bioc/meat/rhdf5filters.buildbin-libdir/00LOCK-rhdf5filters/00new/rhdf5filters/lib/x64//libH5Zblosc.dll" cp bzip2/libH5Zbz2.so "E:/biocbuild/bbs-3.19-bioc/meat/rhdf5filters.buildbin-libdir/00LOCK-rhdf5filters/00new/rhdf5filters/lib/x64//libH5Zbz2.dll" cp lzf/libH5Zlzf.so "E:/biocbuild/bbs-3.19-bioc/meat/rhdf5filters.buildbin-libdir/00LOCK-rhdf5filters/00new/rhdf5filters/lib/x64//libH5Zlzf.dll" cp vbz/libH5Zvbz.so "E:/biocbuild/bbs-3.19-bioc/meat/rhdf5filters.buildbin-libdir/00LOCK-rhdf5filters/00new/rhdf5filters/lib/x64//libH5Zvbz.dll" cp zstd/libH5Zzstd.so "E:/biocbuild/bbs-3.19-bioc/meat/rhdf5filters.buildbin-libdir/00LOCK-rhdf5filters/00new/rhdf5filters/lib/x64//libH5Zzstd.dll" gcc -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -lpthread -I"E:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include" -I'E:/biocbuild/bbs-3.19-bioc/R/library/Rhdf5lib/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rhdf5filters.c -o rhdf5filters.o gcc -shared -s -static-libgcc -o rhdf5filters.dll tmp.def rhdf5filters.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LE:/biocbuild/bbs-3.19-bioc/R/bin/x64 -lR installing to E:/biocbuild/bbs-3.19-bioc/meat/rhdf5filters.buildbin-libdir/00LOCK-rhdf5filters/00new/rhdf5filters/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'rhdf5filters' as rhdf5filters_1.16.0.zip * DONE (rhdf5filters)