Nils Hoffmann
| Snapshot Date: 2024-11-28 13:00 -0500 (Thu, 28 Nov 2024) |
| git_url: https://git.bioconductor.org/packages/rgoslin |
| git_branch: RELEASE_3_20 |
| git_last_commit: d91f79a |
| git_last_commit_date: 2024-10-29 11:09:15 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-12-02 12:04 -0500 (Mon, 02 Dec 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4739 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4482 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4510 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4462 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1736/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| rgoslin 1.10.0 (landing page) Nils Hoffmann
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the rgoslin package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rgoslin.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: rgoslin |
| Version: 1.10.0 |
| Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL rgoslin |
| StartedAt: 2024-11-28 15:59:59 -0500 (Thu, 28 Nov 2024) |
| EndedAt: 2024-11-28 16:02:42 -0500 (Thu, 28 Nov 2024) |
| EllapsedTime: 163.2 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL rgoslin ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘rgoslin’ ... ** using staged installation ** libs using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ using C++11 The name of the shared library to be created is: rgoslin.so make[1]: Entering directory '/home/biocbuild/bbs-3.20-bioc/meat/rgoslin/src/cppgoslin' rm -f "cppgoslin/parser/KnownGrammars.h" rm -f "src/domain/LipidClasses.cpp" rm -f "cppgoslin/domain/ClassesEnum.h" rm -f cppgoslin/domain/*.o rm -f cppgoslin/parser/*.o rm -f cppgoslin/tests/*.o rm -f libcppGoslin.so rm -f *Test rm -f writeGrammarsHeader rm -f writeLipidEnums rm -f libcppGoslin.a make[1]: Leaving directory '/home/biocbuild/bbs-3.20-bioc/meat/rgoslin/src/cppgoslin' make[1]: Entering directory '/home/biocbuild/bbs-3.20-bioc/meat/rgoslin/src/cppgoslin' g++ -std=gnu++11 -g -O2 -Wall -I . -o writeGrammarsHeader writeGrammarsHeader.cpp && "./writeGrammarsHeader" "cppgoslin/parser/KnownGrammars.h" g++ -std=gnu++11 -g -O2 -Wall -I . -o writeLipidEnums writeLipidEnums.cpp src/domain/StringFunctions.cpp src/parser/SumFormulaParserEventHandler.cpp src/parser/ParserClasses.cpp && "./writeLipidEnums" "src/domain/LipidClasses.cpp" g++ -std=gnu++11 -g -O2 -Wall -I. -fPIC -o src/domain/Adduct.o -c src/domain/Adduct.cpp g++ -std=gnu++11 -g -O2 -Wall -I. -fPIC -o src/domain/LipidMolecularSpecies.o -c src/domain/LipidMolecularSpecies.cpp g++ -std=gnu++11 -g -O2 -Wall -I. -fPIC -o src/domain/LipidSnPosition.o -c src/domain/LipidSnPosition.cpp g++ -std=gnu++11 -g -O2 -Wall -I. -fPIC -o src/domain/LipidStructureDefined.o -c src/domain/LipidStructureDefined.cpp g++ -std=gnu++11 -g -O2 -Wall -I. -fPIC -o src/domain/FattyAcid.o -c src/domain/FattyAcid.cpp g++ -std=gnu++11 -g -O2 -Wall -I. -fPIC -o src/domain/LipidAdduct.o -c src/domain/LipidAdduct.cpp g++ -std=gnu++11 -g -O2 -Wall -I. -fPIC -o src/domain/LipidSpecies.o -c src/domain/LipidSpecies.cpp g++ -std=gnu++11 -g -O2 -Wall -I. -fPIC -o src/domain/LipidFullStructure.o -c src/domain/LipidFullStructure.cpp g++ -std=gnu++11 -g -O2 -Wall -I. -fPIC -o src/domain/LipidCompleteStructure.o -c src/domain/LipidCompleteStructure.cpp g++ -std=gnu++11 -g -O2 -Wall -I. -fPIC -o src/domain/LipidSpeciesInfo.o -c src/domain/LipidSpeciesInfo.cpp g++ -std=gnu++11 -g -O2 -Wall -I. -fPIC -o src/domain/StringFunctions.o -c src/domain/StringFunctions.cpp g++ -std=gnu++11 -g -O2 -Wall -I. -fPIC -o src/domain/LipidClasses.o -c src/domain/LipidClasses.cpp g++ -std=gnu++11 -g -O2 -Wall -I. -fPIC -o src/domain/DoubleBonds.o -c src/domain/DoubleBonds.cpp g++ -std=gnu++11 -g -O2 -Wall -I. -fPIC -o src/domain/FunctionalGroup.o -c src/domain/FunctionalGroup.cpp g++ -std=gnu++11 -g -O2 -Wall -I. -fPIC -o src/domain/Headgroup.o -c src/domain/Headgroup.cpp g++ -std=gnu++11 -g -O2 -Wall -I. -fPIC -o src/domain/Cycle.o -c src/domain/Cycle.cpp g++ -std=gnu++11 -g -O2 -Wall -I. -fPIC -o src/domain/GenericDatastructures.o -c src/domain/GenericDatastructures.cpp g++ -std=gnu++11 -g -O2 -Wall -I. -fPIC -o src/parser/ParserClasses.o -c src/parser/ParserClasses.cpp g++ -std=gnu++11 -g -O2 -Wall -I. -fPIC -o src/parser/KnownParsers.o -c src/parser/KnownParsers.cpp g++ -std=gnu++11 -g -O2 -Wall -I. -fPIC -o src/parser/GoslinParserEventHandler.o -c src/parser/GoslinParserEventHandler.cpp g++ -std=gnu++11 -g -O2 -Wall -I. -fPIC -o src/parser/LipidMapsParserEventHandler.o -c src/parser/LipidMapsParserEventHandler.cpp g++ -std=gnu++11 -g -O2 -Wall -I. -fPIC -o src/parser/SwissLipidsParserEventHandler.o -c src/parser/SwissLipidsParserEventHandler.cpp g++ -std=gnu++11 -g -O2 -Wall -I. -fPIC -o src/parser/HmdbParserEventHandler.o -c src/parser/HmdbParserEventHandler.cpp g++ -std=gnu++11 -g -O2 -Wall -I. -fPIC -o src/parser/SumFormulaParserEventHandler.o -c src/parser/SumFormulaParserEventHandler.cpp g++ -std=gnu++11 -g -O2 -Wall -I. -fPIC -o src/parser/SumFormulaParser.o -c src/parser/SumFormulaParser.cpp g++ -std=gnu++11 -g -O2 -Wall -I. -fPIC -o src/parser/ShorthandParserEventHandler.o -c src/parser/ShorthandParserEventHandler.cpp g++ -std=gnu++11 -g -O2 -Wall -I. -fPIC -o src/parser/FattyAcidParserEventHandler.o -c src/parser/FattyAcidParserEventHandler.cpp g++ -std=gnu++11 -g -O2 -Wall -I. -fPIC -o src/parser/LipidBaseParserEventHandler.o -c src/parser/LipidBaseParserEventHandler.cpp ar rcs libcppGoslin.a src/domain/Adduct.o src/domain/LipidMolecularSpecies.o src/domain/LipidSnPosition.o src/domain/LipidStructureDefined.o src/domain/FattyAcid.o src/domain/LipidAdduct.o src/domain/LipidSpecies.o src/domain/LipidFullStructure.o src/domain/LipidCompleteStructure.o src/domain/LipidSpeciesInfo.o src/domain/StringFunctions.o src/domain/LipidClasses.o src/domain/DoubleBonds.o src/domain/FunctionalGroup.o src/domain/Headgroup.o src/domain/Cycle.o src/domain/GenericDatastructures.o src/parser/ParserClasses.o src/parser/KnownParsers.o src/parser/GoslinParserEventHandler.o src/parser/LipidMapsParserEventHandler.o src/parser/SwissLipidsParserEventHandler.o src/parser/HmdbParserEventHandler.o src/parser/SumFormulaParserEventHandler.o src/parser/SumFormulaParser.o src/parser/ShorthandParserEventHandler.o src/parser/FattyAcidParserEventHandler.o src/parser/LipidBaseParserEventHandler.o make[1]: Leaving directory '/home/biocbuild/bbs-3.20-bioc/meat/rgoslin/src/cppgoslin' g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"." -I"./cppgoslin" -I"./cppgoslin/cppgoslin" -I"./cppgoslin/cppgoslin/domain" -I"./cppgoslin/cppgoslin/parser" -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"." -I"./cppgoslin" -I"./cppgoslin/cppgoslin" -I"./cppgoslin/cppgoslin/domain" -I"./cppgoslin/cppgoslin/parser" -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -c rgoslin.cpp -o rgoslin.o g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.20-bioc/R/lib -L/usr/local/lib -o rgoslin.so RcppExports.o rgoslin.o cppgoslin/libcppGoslin.a -L/home/biocbuild/bbs-3.20-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.20-bioc/R/site-library/00LOCK-rgoslin/00new/rgoslin/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rgoslin)