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This page was generated on 2026-03-03 11:57 -0500 (Tue, 03 Mar 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4892
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1482/2361HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
nullranges 1.16.3  (landing page)
Michael Love
Snapshot Date: 2026-03-02 13:45 -0500 (Mon, 02 Mar 2026)
git_url: https://git.bioconductor.org/packages/nullranges
git_branch: RELEASE_3_22
git_last_commit: 9674b25
git_last_commit_date: 2025-12-15 12:25:58 -0500 (Mon, 15 Dec 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
See other builds for nullranges in R Universe.


CHECK results for nullranges on nebbiolo2

To the developers/maintainers of the nullranges package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/nullranges.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: nullranges
Version: 1.16.3
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:nullranges.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings nullranges_1.16.3.tar.gz
StartedAt: 2026-03-03 02:12:11 -0500 (Tue, 03 Mar 2026)
EndedAt: 2026-03-03 02:19:46 -0500 (Tue, 03 Mar 2026)
EllapsedTime: 454.8 seconds
RetCode: 0
Status:   OK  
CheckDir: nullranges.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:nullranges.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings nullranges_1.16.3.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/nullranges.Rcheck’
* using R version 4.5.2 (2025-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘nullranges/DESCRIPTION’ ... OK
* this is package ‘nullranges’ version ‘1.16.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘nullranges’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
as_MatchedGInteractions: no visible global function definition for
  ‘coerceToRanges’
as_MatchedGRanges: no visible global function definition for
  ‘coerceToRanges’
Undefined global functions or variables:
  coerceToRanges
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.22-bioc/meat/nullranges.Rcheck/00check.log’
for details.


Installation output

nullranges.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL nullranges
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’
* installing *source* package ‘nullranges’ ...
** this is package ‘nullranges’ version ‘1.16.3’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (nullranges)

Tests output

nullranges.Rcheck/tests/testthat.Rout


R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(nullranges)
> 
> test_check("nullranges")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 19 ]
> 
> proc.time()
   user  system elapsed 
 18.507   0.951  19.294 

Example timings

nullranges.Rcheck/nullranges-Ex.timings

nameusersystemelapsed
MatchedDataFrame2.7860.0842.707
MatchedGInteractions0.5700.0220.496
MatchedGRanges0.5200.0000.406
bootRanges0.2820.0010.283
combnCov0.0020.0010.003
covariates0.1540.0050.135
focal1.0690.0311.066
indices0.1500.0020.116
makeExampleMatchedDataSet0.5830.0340.507
matchRanges1.5190.0111.081
matched0.1290.0000.103
matchedClass0.1400.0000.113
matchedData0.1300.0010.099
matchitToMatched000
method0.1340.0020.113
oneRegionSegment0.4180.0070.423
overview0.1870.0090.155
plotCovariate3.6430.1203.654
plotPropensity1.7580.1351.838
plotSegment1.9130.0251.939
pool0.1470.0190.124
reduceSegment0.2310.0040.231
segmentDensity0.3810.0030.384
unmatched0.1490.0230.127
withReplacement0.1760.0030.141