Chen Meng
| Snapshot Date: 2026-01-01 13:45 -0500 (Thu, 01 Jan 2026) |
| git_url: https://git.bioconductor.org/packages/mogsa |
| git_branch: RELEASE_3_22 |
| git_last_commit: f89a88e |
| git_last_commit_date: 2025-10-29 10:25:17 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2026-01-05 11:58 -0500 (Mon, 05 Jan 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4883 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4671 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1347/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| mogsa 1.44.0 (landing page) Chen Meng
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the mogsa package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mogsa.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: mogsa |
| Version: 1.44.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data mogsa |
| StartedAt: 2026-01-02 03:37:39 -0000 (Fri, 02 Jan 2026) |
| EndedAt: 2026-01-02 03:38:45 -0000 (Fri, 02 Jan 2026) |
| EllapsedTime: 66.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data mogsa
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* checking for file ‘mogsa/DESCRIPTION’ ... OK
* preparing ‘mogsa’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘moCluster-knitr.Rnw’ using knitr
--- finished re-building ‘moCluster-knitr.Rnw’
--- re-building ‘mogsa-knitr.Rnw’ using knitr
Warning: 'mode(width)' differs between new and previous
==> NOT changing 'width'
Warning: 'mode(width)' differs between new and previous
==> NOT changing 'width'
Quitting from mogsa-knitr.Rnw:277-282 [prepGraphite]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `fetchRemote()`:
! cannot download pathway data: are you offline?
---
Backtrace:
x
1. +-mogsa::prepGraphite(...)
2. \-graphite::pathways("hsapiens", "kegg")
3. \-graphite:::loadData(paste(species, database, sep = "-"))
4. \-graphite:::withArchiveDir(...)
5. \-graphite (local) func(path)
6. \-graphite:::fetchRemote(name, path)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'mogsa-knitr.Rnw' failed with diagnostics:
cannot download pathway data: are you offline?
--- failed re-building ‘mogsa-knitr.Rnw’
SUMMARY: processing the following file failed:
‘mogsa-knitr.Rnw’
Error: Vignette re-building failed.
Execution halted