Richard Heery
| Snapshot Date: 2024-07-15 14:00 -0400 (Mon, 15 Jul 2024) |
| git_url: https://git.bioconductor.org/packages/methodical |
| git_branch: devel |
| git_last_commit: 3aab960 |
| git_last_commit_date: 2024-04-30 11:53:36 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-07-16 11:40 -0400 (Tue, 16 Jul 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4677 |
| palomino6 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4416 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4444 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4393 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4373 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1197/2243 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| methodical 1.1.0 (landing page) Richard Heery
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| palomino6 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the methodical package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/methodical.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: methodical |
| Version: 1.1.0 |
| Command: chmod a+r methodical -R && C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data methodical |
| StartedAt: 2024-07-15 19:02:03 -0400 (Mon, 15 Jul 2024) |
| EndedAt: 2024-07-15 19:03:55 -0400 (Mon, 15 Jul 2024) |
| EllapsedTime: 111.8 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r methodical -R && C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data methodical ### ############################################################################## ############################################################################## * checking for file 'methodical/DESCRIPTION' ... OK * preparing 'methodical': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'calculating_methylation_transcription_correlations.Rmd' using rmarkdown You do not have sufficient privilege to perform this operation. You do not have sufficient privilege to perform this operation. Quitting from lines 51-56 [unnamed-chunk-3] (calculating_methylation_transcription_correlations.Rmd) Error: processing vignette 'calculating_methylation_transcription_correlations.Rmd' failed with diagnostics: directory "C:\Users\biocbuild\bbs-3.20-bioc\tmpdir\Rtmp2pnJt3/mcrpc_wgbs_hg38_chr11" does not seem to contain an HDF5-based SummarizedExperiment object previously saved with saveHDF5SummarizedExperiment() --- failed re-building 'calculating_methylation_transcription_correlations.Rmd' --- re-building 'identifying_tmrs.Rmd' using rmarkdown --- finished re-building 'identifying_tmrs.Rmd' --- re-building 'working_with_meth_rses.Rmd' using rmarkdown Quitting from lines 46-48 [unnamed-chunk-2] (working_with_meth_rses.Rmd) Error: processing vignette 'working_with_meth_rses.Rmd' failed with diagnostics: C:\Users\biocbuild\bbs-3.20-bioc\tmpdir\Rtmp2pnJt3/mcrpc_wgbs_hg38_chr11 already exists but it does not contain a HDF5 SummarizedExperiment --- failed re-building 'working_with_meth_rses.Rmd' SUMMARY: processing the following files failed: 'calculating_methylation_transcription_correlations.Rmd' 'working_with_meth_rses.Rmd' Error: Vignette re-building failed. Execution halted