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This page was generated on 2024-12-02 12:03 -0500 (Mon, 02 Dec 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4739
palomino8Windows Server 2022 Datacenterx644.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" 4482
merida1macOS 12.7.5 Montereyx86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4510
kjohnson1macOS 13.6.6 Venturaarm644.4.2 (2024-10-31) -- "Pile of Leaves" 4462
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1201/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
metabolomicsWorkbenchR 1.16.0  (landing page)
Gavin Rhys Lloyd
Snapshot Date: 2024-11-28 13:00 -0500 (Thu, 28 Nov 2024)
git_url: https://git.bioconductor.org/packages/metabolomicsWorkbenchR
git_branch: RELEASE_3_20
git_last_commit: ea2d6fc
git_last_commit_date: 2024-10-29 10:49:49 -0500 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published

BUILD results for metabolomicsWorkbenchR on nebbiolo2

To the developers/maintainers of the metabolomicsWorkbenchR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/metabolomicsWorkbenchR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: metabolomicsWorkbenchR
Version: 1.16.0
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 metabolomicsWorkbenchR
StartedAt: 2024-11-28 17:55:17 -0500 (Thu, 28 Nov 2024)
EndedAt: 2024-11-28 17:56:04 -0500 (Thu, 28 Nov 2024)
EllapsedTime: 47.0 seconds
RetCode: 0
Status:   OK  
PackageFile: metabolomicsWorkbenchR_1.16.0.tar.gz
PackageFileSize: 2.397 MiB

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 metabolomicsWorkbenchR
###
##############################################################################
##############################################################################


* checking for file ‘metabolomicsWorkbenchR/DESCRIPTION’ ... OK
* preparing ‘metabolomicsWorkbenchR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* looking to see if a ‘data/datalist’ file should be added
* adding MD5 file
* building ‘metabolomicsWorkbenchR_1.16.0.tar.gz’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/compound/regno/11/’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/compound/regno/11/all.json’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/gene/gene_name/acetyl-CoA/’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/gene/gene_name/acetyl-CoA/all.json’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/study/study_id/ST000001/’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/study/study_id/ST000001/data.json’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/study/study_id/ST000001/factors.json’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/study/study_id/ST000001/summary.json’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/study/study_id/ST000009/’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/study/study_id/ST000009/data.json’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/study/study_id/ST000009/factors.json’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/study/study_id/ST000009/summary.json’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/study/study_id/ignored/’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/study/study_id/ignored/untarg_studies.json’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/study/study_title/’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/study/study_title/Diabetes/’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/study/study_title/Diabetes/summary.json’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/structToolbox_example/0/www.metabolomicsworkbench.org/rest/study/study_id/’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/structToolbox_example/0/www.metabolomicsworkbench.org/rest/study/study_id/ST000010/’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/structToolbox_example/0/www.metabolomicsworkbench.org/rest/study/study_id/ST000010/summary.json’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/structToolbox_example/0/www.metabolomicsworkbench.org/rest/study/study_id/ignored/’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘metabolomicsWorkbenchR/vignettes/structToolbox_example/0/www.metabolomicsworkbench.org/rest/study/study_id/ignored/untarg_studies.json’