Till Soerensen
| Snapshot Date: 2026-01-01 13:45 -0500 (Thu, 01 Jan 2026) |
| git_url: https://git.bioconductor.org/packages/immunoClust |
| git_branch: RELEASE_3_22 |
| git_last_commit: 3c4237c |
| git_last_commit_date: 2025-10-29 10:24:29 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2026-01-05 11:58 -0500 (Mon, 05 Jan 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4883 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4671 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1051/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| immunoClust 1.42.0 (landing page) Till Soerensen
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the immunoClust package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/immunoClust.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: immunoClust |
| Version: 1.42.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust |
| StartedAt: 2026-01-02 02:46:24 -0000 (Fri, 02 Jan 2026) |
| EndedAt: 2026-01-02 02:50:02 -0000 (Fri, 02 Jan 2026) |
| EllapsedTime: 218.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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### Running command:
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### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust
###
##############################################################################
##############################################################################
* checking for file ‘immunoClust/DESCRIPTION’ ... OK
* preparing ‘immunoClust’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immunoClust.Rnw’ using Sweave
Loading required package: flowCore
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (8), ICL=131<>26
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (8), ICL=0<>26
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 11 iterations
cluster 2(N=104) has 3 sub-cluster at 3 (6), ICL=120<>30
split 2 into 3 clusters
cluster 1(N=201) has 2 sub-cluster at 2 (9), ICL=18<>30
cluster 1(N=201) has 2 sub-cluster at 2 (9), ICL=0<>30
Model Refinement takes 0.017 mins(max 2: 0.017)
Fit Model 2 of (6/10) K=2->4 N=605
EM 4 takes 0 mins, 11 iterations
cluster 1(N=421) has 2 sub-cluster at 2 (8), ICL=68<>34
split 1 into 2 clusters
cluster 3(N=51) has 3 sub-cluster at 3 (8), ICL=27<>34
cluster 4(N=74) has 2 sub-cluster at 2 (11), ICL=14<>34
cluster 2(N=61) has 2 sub-cluster at 2 (14), ICL=14<>34
cluster 1(N=421) has 2 sub-cluster at 2 (8), ICL=0<>34
Model Refinement takes 0.05 mins(max 1: 0.017)
Fit Model 3 of (6/10) K=4->5 N=1210
EM 5 takes 0 mins, 6 iterations
cluster 4(N=107) has 2 sub-cluster at 2 (13), ICL=52<>37
split 4 into 2 clusters
cluster 3(N=117) has 2 sub-cluster at 2 (16), ICL=38<>37
split 3 into 2 clusters
cluster 2(N=29) has 2 sub-cluster at 2 (7), ICL=24<>37
cluster 5(N=143) has 6 sub-cluster at 7 (23), ICL=14<>37
cluster 2(N=29) has 2 sub-cluster at 2 (7), ICL=0<>37
Model Refinement takes 0.083 mins(max 1: 0.033)
Fit Model 4 of (6/10) K=5->7 N=2420
EM 7 takes 0.017 mins, 9 iterations
cluster 7(N=286) has 2 sub-cluster at 2 (6), ICL=24<>41
cluster 5(N=142) has 5 sub-cluster at 5 (24), ICL=24<>41
cluster 6(N=85) has 4 sub-cluster at 4 (23), ICL=22<>41
cluster 2(N=44) has 3 sub-cluster at 3 (6), ICL=21<>41
cluster 3(N=243) has 7 sub-cluster at 7 (51), ICL=17<>41
cluster 4(N=11) has 2 sub-cluster at 2 (10), ICL=6.7<>41
cluster 1(N=1623) has 2 sub-cluster at 2 (6), ICL=4.1<>41
cluster 1(N=1623) has 2 sub-cluster at 2 (6), ICL=0<>41
Model Refinement takes 0.13 mins(max 1: 0.05)
Fit Model 5 of (6/10) K=7->7 N=4841
EM 7 takes 0 mins, 9 iterations
cluster 4(N=30) has 2 sub-cluster at 2 (100), ICL=72<>45
split 4 into 2 clusters
cluster 7(N=559) has 2 sub-cluster at 2 (6), ICL=41<>45
cluster 2(N=79) has 3 sub-cluster at 3 (8), ICL=41<>45
cluster 1(N=3299) has 3 sub-cluster at 3 (8), ICL=38<>45
cluster 5(N=267) has 3 sub-cluster at 3 (7), ICL=29<>45
cluster 6(N=186) has 2 sub-cluster at 2 (17), ICL=22<>45
cluster 3(N=447) has 7 sub-cluster at 8 (40), ICL=7.6<>45
cluster 1(N=3299) has 3 sub-cluster at 3 (8), ICL=0<>45
Model Refinement takes 0.15 mins(max 1: 0.067)
Fit Model 6 of (6/10) K=7->8 N=9682
EM 8 takes 0 mins, 5 iterations
cluster 2(N=203) has 2 sub-cluster at 2 (6), ICL=118<>48
split 2 into 2 clusters
cluster 1(N=6477) has 3 sub-cluster at 3 (7), ICL=114<>48
split 1 into 3 clusters
cluster 8(N=1140) has 2 sub-cluster at 2 (9), ICL=94<>48
split 8 into 2 clusters
cluster 6(N=557) has 3 sub-cluster at 3 (7), ICL=61<>48
split 6 into 3 clusters
cluster 3(N=907) has 3 sub-cluster at 3 (10), ICL=40<>48
cluster 7(N=393) has 2 sub-cluster at 2 (15), ICL=39<>48
cluster 1(N=6477) has 3 sub-cluster at 3 (7), ICL=0<>48
Model Refinement takes 0.2 mins(max 1: 0.067)
Fit Model 7 of (6/10) K=8->14 N=9682
EM 14 takes 0.017 mins, 8 iterations
cluster 6(N=897) has 3 sub-cluster at 3 (15), ICL=42<>48
cluster 12(N=391) has 2 sub-cluster at 2 (8), ICL=37<>48
cluster 4(N=122) has 3 sub-cluster at 3 (28), ICL=26<>48
cluster 11(N=90) has 2 sub-cluster at 2 (8), ICL=17<>48
cluster 14(N=356) has 2 sub-cluster at 2 (7), ICL=16<>48
cluster 9(N=363) has 7 sub-cluster at 8 (27), ICL=13<>48
cluster 5(N=74) has 3 sub-cluster at 4 (44), ICL=13<>48
cluster 10(N=182) has 7 sub-cluster at 8 (32), ICL=10<>48
cluster 3(N=306) has 3 sub-cluster at 3 (33), ICL=8.9<>48
cluster 3(N=306) has 3 sub-cluster at 3 (33), ICL=0<>48
Model Refinement takes 0.33 mins(max 1: 0.067)
Fit Model 8 of (6/10) K=14->14 N=9682
EM 14 takes 0.017 mins, 3 iterations
Process completed at8
Major Iteration (Trans) (6/4) takes 1.1 mins
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (16), ICL=170<>22
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (16), ICL=0<>22
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 6 iterations
cluster 2(N=92) has 3 sub-cluster at 3 (7), ICL=101<>25
split 2 into 3 clusters
cluster 1(N=212) has 6 sub-cluster at 6 (22), ICL=16<>25
cluster 1(N=212) has 6 sub-cluster at 6 (22), ICL=0<>25
Model Refinement takes 0.033 mins(max 1: 0.033)
Fit Model 2 of (6/10) K=2->4 N=605
EM 4 takes 0 mins, 8 iterations
cluster 3(N=70) has 3 sub-cluster at 3 (10), ICL=35<>28
split 3 into 3 clusters
cluster 1(N=417) has 8 sub-cluster at 8 (31), ICL=19<>28
cluster 2(N=66) has 3 sub-cluster at 3 (27), ICL=17<>28
cluster 4(N=55) has 2 sub-cluster at 3 (14), ICL=6.9<>28
cluster 1(N=417) has 8 sub-cluster at 8 (31), ICL=0<>28
Model Refinement takes 0.05 mins(max 1: 0.017)
Fit Model 3 of (6/10) K=4->6 N=1210
EM 6 takes 0 mins, 12 iterations
cluster 1(N=841) has 2 sub-cluster at 2 (5), ICL=109<>31
split 1 into 2 clusters
cluster 6(N=117) has 2 sub-cluster at 2 (14), ICL=37<>31
split 6 into 2 clusters
cluster 3(N=37) has 3 sub-cluster at 3 (7), ICL=22<>31
cluster 2(N=150) has 7 sub-cluster at 7 (23), ICL=17<>31
cluster 5(N=38) has 2 sub-cluster at 2 (18), ICL=14<>31
cluster 4(N=32) has 3 sub-cluster at 3 (8), ICL=12<>31
cluster 1(N=841) has 2 sub-cluster at 2 (5), ICL=0<>31
Model Refinement takes 0.083 mins(max 1: 0.033)
Fit Model 4 of (6/10) K=6->8 N=2420
EM 8 takes 0 mins, 9 iterations
cluster 2(N=49) has 2 sub-cluster at 2 (6), ICL=37<>34
split 2 into 2 clusters
cluster 6(N=111) has 3 sub-cluster at 3 (28), ICL=28<>34
cluster 5(N=91) has 7 sub-cluster at 8 (23), ICL=21<>34
cluster 4(N=70) has 6 sub-cluster at 7 (25), ICL=20<>34
cluster 3(N=281) has 2 sub-cluster at 2 (8), ICL=15<>34
cluster 8(N=234) has 8 sub-cluster at 8 (32), ICL=13<>34
cluster 7(N=15) has 2 sub-cluster at 2 (100), ICL=3.5<>34
cluster 2(N=49) has 2 sub-cluster at 2 (6), ICL=0<>34
Model Refinement takes 0.13 mins(max 1: 0.05)
Fit Model 5 of (6/10) K=8->9 N=4841
EM 9 takes 0 mins, 10 iterations
cluster 3(N=38) has 2 sub-cluster at 2 (100), ICL=58<>37
split 3 into 2 clusters
cluster 9(N=450) has 5 sub-cluster at 5 (74), ICL=39<>37
split 9 into 5 clusters
cluster 2(N=91) has 2 sub-cluster at 2 (9), ICL=38<>37
split 2 into 2 clusters
cluster 7(N=195) has 7 sub-cluster at 7 (99), ICL=37<>37
cluster 1(N=3239) has 4 sub-cluster at 4 (7), ICL=34<>37
cluster 4(N=553) has 2 sub-cluster at 2 (7), ICL=33<>37
cluster 8(N=19) has 2 sub-cluster at 2 (100), ICL=30<>37
cluster 5(N=123) has 6 sub-cluster at 6 (15), ICL=29<>37
cluster 6(N=173) has 5 sub-cluster at 5 (20), ICL=19<>37
cluster 1(N=3239) has 4 sub-cluster at 4 (7), ICL=0<>37
Model Refinement takes 0.18 mins(max 1: 0.067)
Fit Model 6 of (6/10) K=9->15 N=9682
EM 13 takes 0.017 mins, 6 iterations
cluster 1(N=6474) has 3 sub-cluster at 3 (7), ICL=133<>40
split 1 into 3 clusters
cluster 5(N=1113) has 2 sub-cluster at 2 (10), ICL=48<>40
split 5 into 2 clusters
cluster 8(N=390) has 3 sub-cluster at 3 (34), ICL=41<>40
split 8 into 3 clusters
cluster 2(N=55) has 2 sub-cluster at 2 (9), ICL=33<>40
cluster 7(N=382) has 3 sub-cluster at 3 (20), ICL=28<>40
cluster 6(N=226) has 3 sub-cluster at 3 (22), ICL=21<>40
cluster 13(N=402) has 2 sub-cluster at 2 (9), ICL=17<>40
cluster 3(N=108) has 4 sub-cluster at 4 (14), ICL=12<>40
cluster 10(N=260) has 8 sub-cluster at 8 (34), ICL=12<>40
cluster 4(N=76) has 3 sub-cluster at 4 (12), ICL=7.4<>40
cluster 12(N=282) has 7 sub-cluster at 7 (43), ICL=4.9<>40
cluster 11(N=277) has 5 sub-cluster at 8 (30), ICL=3.6<>40
cluster 1(N=6474) has 3 sub-cluster at 3 (7), ICL=0<>40
Model Refinement takes 0.28 mins(max 1: 0.067)
Fit Model 7 of (6/10) K=13->18 N=9682
EM 18 takes 0.017 mins, 6 iterations
cluster 8(N=400) has 2 sub-cluster at 3 (62), ICL=64<>40
split 8 into 2 clusters
cluster 10(N=388) has 2 sub-cluster at 2 (8), ICL=34<>40
cluster 4(N=39) has 3 sub-cluster at 3 (12), ICL=26<>40
cluster 15(N=236) has 7 sub-cluster at 7 (67), ICL=23<>40
cluster 5(N=108) has 6 sub-cluster at 6 (23), ICL=21<>40
cluster 9(N=223) has 2 sub-cluster at 2 (8), ICL=19<>40
cluster 18(N=402) has 2 sub-cluster at 2 (15), ICL=17<>40
cluster 13(N=118) has 4 sub-cluster at 4 (17), ICL=15<>40
cluster 6(N=76) has 4 sub-cluster at 5 (15), ICL=14<>40
cluster 12(N=136) has 7 sub-cluster at 8 (31), ICL=12<>40
cluster 14(N=51) has 2 sub-cluster at 2 (12), ICL=11<>40
cluster 11(N=223) has 6 sub-cluster at 7 (27), ICL=9.5<>40
cluster 17(N=280) has 7 sub-cluster at 7 (42), ICL=8<>40
cluster 3(N=310) has 7 sub-cluster at 8 (29), ICL=5.1<>40
cluster 16(N=296) has 7 sub-cluster at 8 (31), ICL=0.47<>40
cluster 3(N=310) has 7 sub-cluster at 8 (29), ICL=0<>40
Model Refinement takes 0.42 mins(max 1: 0.067)
Fit Model 8 of (6/10) K=18->19 N=9682
EM 19 takes 0.017 mins, 8 iterations
cluster 11(N=391) has 2 sub-cluster at 2 (7), ICL=32<>40
cluster 4(N=31) has 3 sub-cluster at 3 (17), ICL=24<>40
cluster 10(N=218) has 2 sub-cluster at 2 (9), ICL=19<>40
cluster 19(N=401) has 2 sub-cluster at 2 (12), ICL=18<>40
cluster 12(N=217) has 6 sub-cluster at 7 (14), ICL=18<>40
cluster 14(N=114) has 3 sub-cluster at 3 (51), ICL=16<>40
cluster 13(N=145) has 5 sub-cluster at 6 (31), ICL=13<>40
cluster 5(N=109) has 5 sub-cluster at 5 (14), ICL=12<>40
cluster 15(N=51) has 2 sub-cluster at 2 (13), ICL=9.8<>40
cluster 18(N=284) has 3 sub-cluster at 3 (54), ICL=9.3<>40
cluster 16(N=199) has 4 sub-cluster at 4 (20), ICL=8.2<>40
cluster 8(N=13) has 2 sub-cluster at 2 (100), ICL=7.6<>40
cluster 3(N=310) has 2 sub-cluster at 2 (8), ICL=5.9<>40
cluster 9(N=418) has 3 sub-cluster at 3 (16), ICL=3<>40
cluster 17(N=323) has 7 sub-cluster at 8 (28), ICL=2.6<>40
cluster 6(N=75) has 3 sub-cluster at 4 (11), ICL=2.4<>40
cluster 3(N=310) has 2 sub-cluster at 2 (8), ICL=0<>40
Model Refinement takes 0.42 mins(max 1: 0.067)
Fit Model 9 of (6/10) K=19->19 N=9682
EM 19 takes 0.017 mins, 3 iterations
Process completed at9
Major Iteration (Trans) (6/4) takes 1.7 mins
Fit Model 1 of 10 with 8 clusters
=> results in 8 clusters
Fit Model 2 of 10 with 21 clusters
=> results in 13 clusters
Fit Model 3 of 10 with 23 clusters
=> results in 19 clusters
Fit Model 4 of 10 with 26 clusters
=> results in 21 clusters
Fit Model 5 of 10 with 25 clusters
=> results in 21 clusters
Error: processing vignette 'immunoClust.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'immunoClust.tex' failed.
LaTeX errors:
! LaTeX Error: File `inputenx.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.15 ^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘immunoClust.Rnw’
SUMMARY: processing the following file failed:
‘immunoClust.Rnw’
Error: Vignette re-building failed.
Execution halted