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This page was generated on 2025-01-16 12:09 -0500 (Thu, 16 Jan 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4746
palomino8Windows Server 2022 Datacenterx644.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" 4489
merida1macOS 12.7.5 Montereyx86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4517
kjohnson1macOS 13.6.6 Venturaarm644.4.2 (2024-10-31) -- "Pile of Leaves" 4469
taishanLinux (openEuler 24.03 LTS)aarch644.4.2 (2024-10-31) -- "Pile of Leaves" 4387
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 932/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
h5vc 2.40.0  (landing page)
Paul Theodor Pyl
Snapshot Date: 2025-01-13 13:00 -0500 (Mon, 13 Jan 2025)
git_url: https://git.bioconductor.org/packages/h5vc
git_branch: RELEASE_3_20
git_last_commit: 6e56c15
git_last_commit_date: 2024-10-29 09:49:12 -0500 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped
palomino8Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.7.5 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.6 Ventura / arm64  OK    ERROR  skippedskipped
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped

BUILD results for h5vc on kjohnson1

To the developers/maintainers of the h5vc package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/h5vc.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: h5vc
Version: 2.40.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data h5vc
StartedAt: 2025-01-14 01:11:05 -0500 (Tue, 14 Jan 2025)
EndedAt: 2025-01-14 01:11:48 -0500 (Tue, 14 Jan 2025)
EllapsedTime: 43.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data h5vc
###
##############################################################################
##############################################################################


* checking for file ‘h5vc/DESCRIPTION’ ... OK
* preparing ‘h5vc’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘h5vc.simple.genome.browser.Rmd’ using rmarkdown
[WARNING] This document format requires a nonempty <title> element.
  Defaulting to 'h5vc.simple.genome.browser.knit' as the title.
  To specify a title, use 'title' in metadata or --metadata title="...".
--- finished re-building ‘h5vc.simple.genome.browser.Rmd’

--- re-building ‘h5vc.tour.Rmd’ using rmarkdown
2025-01-14 01:11:42.264 R[50052:135869078] XType: Using static font registry.

Quitting from lines 234-254 [unnamed-chunk-1] (h5vc.tour.Rmd)
Error: processing vignette 'h5vc.tour.Rmd' failed with diagnostics:
Your query has been redirected to http://status.ensembl.org indicating this Ensembl service is currently unavailable.
Look at ?useEnsembl for details on how to try a mirror site.
--- failed re-building ‘h5vc.tour.Rmd’

SUMMARY: processing the following file failed:
  ‘h5vc.tour.Rmd’

Error: Vignette re-building failed.
Execution halted