Build/check report for BioC 3.23 - CHECK results for graper on nebbiolo1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.4 LTS)	x86_64	4.6.0 RC (2026-04-17 r89917) -- "Because it was There"	4995
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for graper on nebbiolo1

To the developers/maintainers of the graper package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: graper

Version: 1.28.0

Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings graper_1.28.0.tar.gz

StartedAt: 2026-05-20 00:44:54 -0400 (Wed, 20 May 2026)

EndedAt: 2026-05-20 00:46:26 -0400 (Wed, 20 May 2026)

EllapsedTime: 92.2 seconds

RetCode: 0

Status: OK

CheckDir: graper.Rcheck

Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings graper_1.28.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.23-bioc/meat/graper.Rcheck’
* using R version 4.6.0 RC (2026-04-17 r89917)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
* running under: Ubuntu 24.04.4 LTS
* using session charset: UTF-8
* current time: 2026-05-20 04:44:54 UTC
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.28.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... INFO
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.23-bioc/meat/graper.Rcheck/00check.log’
for details.

Installation output

graper.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL graper
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’
* installing *source* package ‘graper’ ...
** this is package ‘graper’ version ‘1.28.0’
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0’
g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c fit_graper.cpp -o fit_graper.o
g++ -std=gnu++20 -shared -L/home/biocbuild/bbs-3.23-bioc/R/lib -L/usr/local/lib -o graper.so RcppExports.o fit_graper.o -llapack -L/home/biocbuild/bbs-3.23-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.23-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.23-bioc/R/site-library/00LOCK-graper/00new/graper/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)

Tests output

graper.Rcheck/tests/testthat.Rout


R version 4.6.0 RC (2026-04-17 r89917) -- "Because it was There"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(graper)
> 
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-878.248
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-593.744
ELB improved by 284.504

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-535.834
ELB improved by 57.9097

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-493.76
ELB improved by 42.0743

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-472.229
ELB improved by 21.5313

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-463.897
ELB improved by 8.33182

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.448
ELB improved by 4.44898

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.765
ELB improved by 3.68324

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.352
ELB improved by 3.41236

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.191
ELB improved by 3.16127

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.389
ELB improved by 2.80205

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.049
ELB improved by 2.3403

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.191
ELB improved by 1.85732

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.76
ELB improved by 1.43131

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.668
ELB improved by 1.09223

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.829
ELB improved by 0.838468

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.17
ELB improved by 0.65966

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.63
ELB improved by 0.540146

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.167
ELB improved by 0.462406

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.755
ELB improved by 0.412127

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.375
ELB improved by 0.379526

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.017
ELB improved by 0.358135

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.674
ELB improved by 0.343462

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.342
ELB improved by 0.332222

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.02
ELB improved by 0.321972

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.709
ELB improved by 0.310991

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.41
ELB improved by 0.298287

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.127
ELB improved by 0.283593

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.86
ELB improved by 0.267213

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.61
ELB improved by 0.249747

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.378
ELB improved by 0.231865

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.164
ELB improved by 0.214174

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.967
ELB improved by 0.197171

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.785
ELB improved by 0.181227

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.619
ELB improved by 0.166579

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.465
ELB improved by 0.153353

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.324
ELB improved by 0.141587

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.193
ELB improved by 0.131252

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.07
ELB improved by 0.122285

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.956
ELB improved by 0.114605

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.848
ELB improved by 0.10813

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.745
ELB improved by 0.102788

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.646
ELB improved by 0.0985241

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.551
ELB improved by 0.0953073

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.458
ELB improved by 0.093139

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.366
ELB improved by 0.0920616

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.274
ELB improved by 0.0921756

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.18
ELB improved by 0.0936661

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.083
ELB improved by 0.0968532

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.981
ELB improved by 0.10228

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.87
ELB improved by 0.110866

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.746
ELB improved by 0.124154

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.601
ELB improved by 0.144538

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.426
ELB improved by 0.174833

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.211
ELB improved by 0.215138

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.955
ELB improved by 0.255826

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.677
ELB improved by 0.278007

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.403
ELB improved by 0.274364

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.146
ELB improved by 0.256784

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.91
ELB improved by 0.236706

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.692
ELB improved by 0.217529

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.493
ELB improved by 0.1994

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.311
ELB improved by 0.182153

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.145
ELB improved by 0.165779

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.994
ELB improved by 0.150326

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.859
ELB improved by 0.135836

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.736
ELB improved by 0.122342

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.626
ELB improved by 0.109887

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.528
ELB improved by 0.0985275

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.439
ELB improved by 0.0883195

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.36
ELB improved by 0.079297

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.289
ELB improved by 0.0714509

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.224
ELB improved by 0.0647157

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.165
ELB improved by 0.0589683

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.111
ELB improved by 0.0540373

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.061
ELB improved by 0.0497233

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.015
ELB improved by 0.0458273

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.973
ELB improved by 0.0421818

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.935
ELB improved by 0.0386784

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.899
ELB improved by 0.0352787

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.867
ELB improved by 0.0320056

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.838
ELB improved by 0.028916

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.812
ELB improved by 0.0260717

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.789
ELB improved by 0.0235175

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.768
ELB improved by 0.0212743

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.748
ELB improved by 0.0193414

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.731
ELB improved by 0.017704

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.714
ELB improved by 0.01634

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.699
ELB improved by 0.0152259

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.685
ELB improved by 0.0143398

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.671
ELB improved by 0.0136634

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.658
ELB improved by 0.0131831

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.645
ELB improved by 0.0128905

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.632
ELB improved by 0.0127828

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.619
ELB improved by 0.012864

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.606
ELB improved by 0.0131468

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.592
ELB improved by 0.0136552

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.578
ELB improved by 0.0144306

iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.562
ELB improved by 0.0155403

iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.545
ELB improved by 0.0170916

iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.526
ELB improved by 0.0192498

iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.504
ELB improved by 0.0222578

iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.477
ELB improved by 0.0264383

iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.445
ELB improved by 0.0321338

iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.406
ELB improved by 0.0394799

iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.358
ELB improved by 0.0478842

iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.303
ELB improved by 0.0553219

iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.244
ELB improved by 0.0583962

iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.19
ELB improved by 0.0544867

iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.145
ELB improved by 0.0445887

iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.112
ELB improved by 0.0327299

iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.09
ELB improved by 0.022443

iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.075
ELB improved by 0.0149831

iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.065
ELB improved by 0.0100652

iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.058
ELB improved by 0.00696614

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-865.585
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-590.471
ELB improved by 275.114

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-528.223
ELB improved by 62.2477

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-477.62
ELB improved by 50.6032

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.915
ELB improved by 26.7051

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.085
ELB improved by 9.82981

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.255
ELB improved by 4.83029

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.163
ELB improved by 3.09122

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.846
ELB improved by 2.31766

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.853
ELB improved by 1.9925

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.988
ELB improved by 1.86523

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.16
ELB improved by 1.82855

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.319
ELB improved by 1.84074

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.429
ELB improved by 1.8898

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.459
ELB improved by 1.97038

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.395
ELB improved by 2.06335

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.273
ELB improved by 2.12186

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.194
ELB improved by 2.07944

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.3
ELB improved by 1.8943

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.701
ELB improved by 1.59836

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.422
ELB improved by 1.27935

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.412
ELB improved by 1.00947

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.595
ELB improved by 0.817932

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.887
ELB improved by 0.707201

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.224
ELB improved by 0.663788

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.555
ELB improved by 0.668941

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.846
ELB improved by 0.708977

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.066
ELB improved by 0.779604

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.177
ELB improved by 0.888536

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.119
ELB improved by 1.05856

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.804
ELB improved by 1.31446

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.191
ELB improved by 1.61365

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.352
ELB improved by 1.83913

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.383
ELB improved by 1.96907

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.372
ELB improved by 2.01053

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.447
ELB improved by 1.9253

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.744
ELB improved by 1.70291

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.344
ELB improved by 1.39988

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.232
ELB improved by 1.11184

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.307
ELB improved by 0.925592

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.414
ELB improved by 0.892807

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.526
ELB improved by 0.887698

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.828
ELB improved by 0.698358

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.325
ELB improved by 0.502905

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.936
ELB improved by 0.388939

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.633
ELB improved by 0.302887

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.411
ELB improved by 0.221737

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.252
ELB improved by 0.158819

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.131
ELB improved by 0.121814

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.026
ELB improved by 0.104516

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.925
ELB improved by 0.100983

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.814
ELB improved by 0.111065

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.676
ELB improved by 0.138398

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.497
ELB improved by 0.178738

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.299
ELB improved by 0.198377

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.136
ELB improved by 0.16203

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.037
ELB improved by 0.0996776

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.981
ELB improved by 0.0553875

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.948
ELB improved by 0.0336828

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.924
ELB improved by 0.0241046

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.904
ELB improved by 0.0194735

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.887
ELB improved by 0.01674

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.873
ELB improved by 0.0148106

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.859
ELB improved by 0.0133012

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.847
ELB improved by 0.0120614

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.836
ELB improved by 0.0110186

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.826
ELB improved by 0.01013

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.817
ELB improved by 0.00936606

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-865.176
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-582.087
ELB improved by 283.09

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-522.786
ELB improved by 59.3001

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-479.285
ELB improved by 43.5011

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.681
ELB improved by 19.6044

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.363
ELB improved by 7.31847

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.073
ELB improved by 4.28946

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.42
ELB improved by 3.65314

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.832
ELB improved by 3.58816

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.07
ELB improved by 3.7617

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.015
ELB improved by 4.05478

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.696
ELB improved by 4.319

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.399
ELB improved by 4.297

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.635
ELB improved by 3.7643

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.8
ELB improved by 2.83482

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.884
ELB improved by 1.91624

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.62
ELB improved by 1.26414

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.766
ELB improved by 0.854057

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.169
ELB improved by 0.596559

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.734
ELB improved by 0.434677

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.4
ELB improved by 0.334929

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.126
ELB improved by 0.273985

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.89
ELB improved by 0.235288

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.681
ELB improved by 0.209021

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.491
ELB improved by 0.19001

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.316
ELB improved by 0.17551

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.152
ELB improved by 0.163965

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.997
ELB improved by 0.154432

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.851
ELB improved by 0.146314

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.712
ELB improved by 0.139226

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.579
ELB improved by 0.132916

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.452
ELB improved by 0.127221

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.33
ELB improved by 0.122039

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.212
ELB improved by 0.117308

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.099
ELB improved by 0.112991

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.99
ELB improved by 0.109068

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.885
ELB improved by 0.105526

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.782
ELB improved by 0.102356

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.683
ELB improved by 0.0995481

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.586
ELB improved by 0.0970904

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.491
ELB improved by 0.0949675

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.398
ELB improved by 0.093161

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.306
ELB improved by 0.0916498

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.216
ELB improved by 0.0904104

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.126
ELB improved by 0.089418

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.037
ELB improved by 0.0886466

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.949
ELB improved by 0.0880701

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.862
ELB improved by 0.0876621

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.774
ELB improved by 0.087397

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.687
ELB improved by 0.0872493

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.6
ELB improved by 0.0871945

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.513
ELB improved by 0.0872091

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.425
ELB improved by 0.0872701

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.338
ELB improved by 0.0873563

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.251
ELB improved by 0.0874475

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.163
ELB improved by 0.0875253

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.076
ELB improved by 0.0875739

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.988
ELB improved by 0.0875803

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.9
ELB improved by 0.0875363

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.813
ELB improved by 0.0874401

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.726
ELB improved by 0.0872996

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.639
ELB improved by 0.0871368

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.552
ELB improved by 0.086996

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.465
ELB improved by 0.0869545

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.377
ELB improved by 0.0871405

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.29
ELB improved by 0.0877598

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.201
ELB improved by 0.0891325

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.109
ELB improved by 0.0917322

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.013
ELB improved by 0.0961906

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.909
ELB improved by 0.103154

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.797
ELB improved by 0.112801

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.673
ELB improved by 0.124052

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.538
ELB improved by 0.134477

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.396
ELB improved by 0.142439

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.246
ELB improved by 0.149864

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.084
ELB improved by 0.161747

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.9
ELB improved by 0.183611

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.681
ELB improved by 0.219716

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.411
ELB improved by 0.269466

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.091
ELB improved by 0.32058

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.738
ELB improved by 0.352239

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.377
ELB improved by 0.36162

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.002
ELB improved by 0.374634

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.595
ELB improved by 0.40761

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.172
ELB improved by 0.422398

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.796
ELB improved by 0.376075

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.503
ELB improved by 0.293423

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.293
ELB improved by 0.209675

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.147
ELB improved by 0.145616

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.042
ELB improved by 0.105633

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.96
ELB improved by 0.0822434

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.892
ELB improved by 0.0677743

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.834
ELB improved by 0.0578609

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.784
ELB improved by 0.0504221

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.739
ELB improved by 0.0444965

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.699
ELB improved by 0.0396289

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.664
ELB improved by 0.0355862

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.632
ELB improved by 0.0322227

iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.602
ELB improved by 0.0294192

iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.575
ELB improved by 0.0270569

iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.55
ELB improved by 0.0250115

iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.527
ELB improved by 0.0231563

iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.506
ELB improved by 0.0213735

iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.486
ELB improved by 0.0195715

iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.468
ELB improved by 0.0177022

iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.453
ELB improved by 0.0157697

iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.439
ELB improved by 0.0138242

iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.427
ELB improved by 0.0119403

iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.417
ELB improved by 0.0101915

iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.408
ELB improved by 0.0086311

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-880.026
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-572.935
ELB improved by 307.092

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-515.954
ELB improved by 56.9805

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-482.276
ELB improved by 33.6775

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-467.953
ELB improved by 14.3239

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-461.977
ELB improved by 5.9759

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-458.251
ELB improved by 3.72612

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.963
ELB improved by 3.28715

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.711
ELB improved by 3.25242

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.379
ELB improved by 3.33225

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.953
ELB improved by 3.42582

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.507
ELB improved by 3.44546

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.214
ELB improved by 3.2931

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.309
ELB improved by 2.90563

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.98
ELB improved by 2.32886

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.267
ELB improved by 1.7129

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.066
ELB improved by 1.20069

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.225
ELB improved by 0.841744

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.613
ELB improved by 0.611132

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.148
ELB improved by 0.465087

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.779
ELB improved by 0.369638

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.475
ELB improved by 0.304116

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.217
ELB improved by 0.257058

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.995
ELB improved by 0.222159

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.8
ELB improved by 0.195714

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.624
ELB improved by 0.175323

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.465
ELB improved by 0.159343

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.318
ELB improved by 0.146633

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.182
ELB improved by 0.136413

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.054
ELB improved by 0.128157

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.932
ELB improved by 0.121506

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.816
ELB improved by 0.116209

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.704
ELB improved by 0.112084

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.595
ELB improved by 0.108995

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.488
ELB improved by 0.106832

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.383
ELB improved by 0.105507

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.278
ELB improved by 0.10494

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.173
ELB improved by 0.105062

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.067
ELB improved by 0.105809

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.96
ELB improved by 0.107126

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.851
ELB improved by 0.10897

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.739
ELB improved by 0.111317

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.625
ELB improved by 0.11417

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.508
ELB improved by 0.117568

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.386
ELB improved by 0.121603

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.26
ELB improved by 0.126437

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.127
ELB improved by 0.13234

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.988
ELB improved by 0.139736

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.838
ELB improved by 0.149299

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.676
ELB improved by 0.162119

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.496
ELB improved by 0.180041

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.29
ELB improved by 0.206353

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.042
ELB improved by 0.24731

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.727
ELB improved by 0.315465

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.291
ELB improved by 0.436439

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.634
ELB improved by 0.656683

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.614
ELB improved by 1.01954

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.167
ELB improved by 1.44685

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.408
ELB improved by 1.75989

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.47
ELB improved by 1.9373

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.485
ELB improved by 1.98503

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.602
ELB improved by 1.88295

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.979
ELB improved by 1.62302

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.747
ELB improved by 1.23209

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.89
ELB improved by 0.856782

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.277
ELB improved by 0.613752

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.75
ELB improved by 0.526316

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.133
ELB improved by 0.617596

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.315
ELB improved by 0.817824

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.487
ELB improved by 0.828029

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.859
ELB improved by 0.628249

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.467
ELB improved by 0.391918

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.235
ELB improved by 0.231427

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.092
ELB improved by 0.143042

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.997
ELB improved by 0.0954068

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.928
ELB improved by 0.068377

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.877
ELB improved by 0.0518738

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.836
ELB improved by 0.0410654

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.802
ELB improved by 0.0335587

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.774
ELB improved by 0.0280941

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.75
ELB improved by 0.0239644

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.729
ELB improved by 0.0207483

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.711
ELB improved by 0.0181826

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.695
ELB improved by 0.0160955

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.68
ELB improved by 0.0143709

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.668
ELB improved by 0.0129277

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.656
ELB improved by 0.0117075

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.645
ELB improved by 0.010667

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.635
ELB improved by 0.00977361

ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
> 
> proc.time()
   user  system elapsed 
  2.407   0.198   2.594

Example timings

graper.Rcheck/graper-Ex.timings

name	user	system	elapsed
coef.graper	0.057	0.020	0.078
getPIPs	0.063	0.041	0.104
graper	0.083	0.017	0.099
makeExampleData	0.01	0.00	0.01
makeExampleDataWithUnequalGroups	0.012	0.000	0.011
plotELBO	0.296	0.023	0.318
plotGroupPenalties	0.910	0.012	0.924
plotPosterior	0.637	0.015	0.652
predict.graper	2.144	0.076	2.222
print.graper	0.051	0.035	0.086