Back to Multiple platform build/check report for BioC 3.20:   simplified   long
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This page was generated on 2025-03-31 12:10 -0400 (Mon, 31 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.3 (2025-02-28) -- "Trophy Case" 4764
palomino8Windows Server 2022 Datacenterx644.4.3 (2025-02-28 ucrt) -- "Trophy Case" 4495
merida1macOS 12.7.5 Montereyx86_644.4.3 (2025-02-28) -- "Trophy Case" 4522
kjohnson1macOS 13.6.6 Venturaarm644.4.3 (2025-02-28) -- "Trophy Case" 4449
taishanLinux (openEuler 24.03 LTS)aarch644.4.3 (2025-02-28) -- "Trophy Case" 4426
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 663/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
epiregulon.extra 1.2.2  (landing page)
Xiaosai Yao
Snapshot Date: 2025-03-27 13:00 -0400 (Thu, 27 Mar 2025)
git_url: https://git.bioconductor.org/packages/epiregulon.extra
git_branch: RELEASE_3_20
git_last_commit: aa85b23
git_last_commit_date: 2025-03-19 05:40:02 -0400 (Wed, 19 Mar 2025)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.6 Ventura / arm64  OK    ERROR  skippedskipped
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    OK    OK  

BUILD results for epiregulon.extra on kjohnson1

To the developers/maintainers of the epiregulon.extra package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/epiregulon.extra.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: epiregulon.extra
Version: 1.2.2
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data epiregulon.extra
StartedAt: 2025-03-27 23:09:51 -0400 (Thu, 27 Mar 2025)
EndedAt: 2025-03-27 23:16:38 -0400 (Thu, 27 Mar 2025)
EllapsedTime: 406.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data epiregulon.extra
###
##############################################################################
##############################################################################


* checking for file ‘epiregulon.extra/DESCRIPTION’ ... OK
* preparing ‘epiregulon.extra’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Data_visualization.Rmd’ using rmarkdown
2025-03-27 23:11:45.253 R[23258:328914618] XType: Using static font registry.

Quitting from Data_visualization.Rmd:230-237 [plot gsea network]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Data_visualization.Rmd' failed with diagnostics:
Problem while converting geom to grob.
ℹ Error occurred in the 1st layer.
Caused by error in `pathAttr()`:
! 'names' attribute [5820854616] must be the same length as the vector [2]
--- failed re-building ‘Data_visualization.Rmd’

SUMMARY: processing the following file failed:
  ‘Data_visualization.Rmd’

Error: Vignette re-building failed.
Execution halted