Paolo Martini
| Snapshot Date: 2026-01-01 13:45 -0500 (Thu, 01 Jan 2026) |
| git_url: https://git.bioconductor.org/packages/clipper |
| git_branch: RELEASE_3_22 |
| git_last_commit: a4ee17e |
| git_last_commit_date: 2025-10-29 10:13:24 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2026-01-05 11:58 -0500 (Mon, 05 Jan 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4883 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4671 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 379/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| clipper 1.50.0 (landing page) Paolo Martini
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the clipper package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/clipper.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: clipper |
| Version: 1.50.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data clipper |
| StartedAt: 2026-01-02 00:48:41 -0000 (Fri, 02 Jan 2026) |
| EndedAt: 2026-01-02 00:51:03 -0000 (Fri, 02 Jan 2026) |
| EllapsedTime: 141.8 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data clipper ### ############################################################################## ############################################################################## * checking for file ‘clipper/DESCRIPTION’ ... OK * preparing ‘clipper’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘clipper.Rnw’ using Sweave Warning: Local storage of pathway data using format v1 was deprecated in graphite 1.55.1. ✔ graphite will automatically migrate to and use format v2 going forward. ℹ If you no longer need compatibility with older graphite versions, run purgeCacheV1() to reclaim disk space. Error in curl::curl_fetch_disk(url, x$path, handle = handle) : Timeout was reached [graphiteweb.bio.unipd.it]: Connection timed out after 10002 milliseconds Error: processing vignette 'clipper.Rnw' failed with diagnostics: chunk 3 (label = loadGraphitePathways) Error in fetchRemote(name, path) : cannot download pathway data: are you offline? --- failed re-building ‘clipper.Rnw’ SUMMARY: processing the following file failed: ‘clipper.Rnw’ Error: Vignette re-building failed. Execution halted