Multiple platform build/check report for BioC 3.20 - BUILD results for chromstaR on kjohnson1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.4.2 (2024-10-31) -- "Pile of Leaves"	4744
palomino8	Windows Server 2022 Datacenter	x64	4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves"	4487
merida1	macOS 12.7.5 Monterey	x86_64	4.4.2 (2024-10-31) -- "Pile of Leaves"	4515
kjohnson1	macOS 13.6.6 Ventura	arm64	4.4.2 (2024-10-31) -- "Pile of Leaves"	4467
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for chromstaR on kjohnson1

To the developers/maintainers of the chromstaR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/chromstaR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: chromstaR

Version: 1.32.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data chromstaR

StartedAt: 2024-12-30 20:38:02 -0500 (Mon, 30 Dec 2024)

EndedAt: 2024-12-30 20:43:26 -0500 (Mon, 30 Dec 2024)

EllapsedTime: 323.8 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data chromstaR
###
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* checking for file ‘chromstaR/DESCRIPTION’ ... OK
* preparing ‘chromstaR’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘chromstaR.Rnw’ using knitr
2024-12-30 20:40:02.233 R[93928:104622958] XType: Using static font registry.
2024-12-30 20:40:02.234 R[93929:104622959] XType: Using static font registry.
2024-12-30 20:40:02.463 R[93931:104622961] XType: Using static font registry.
2024-12-30 20:40:47.496 R[94298:104623996] XType: Using static font registry.
2024-12-30 20:40:47.524 R[94299:104623997] XType: Using static font registry.
2024-12-30 20:40:48.175 R[94300:104623999] XType: Using static font registry.
2024-12-30 20:40:48.219 R[94297:104623998] XType: Using static font registry.
2024-12-30 20:42:21.282 R[95065:104626464] XType: Using static font registry.
2024-12-30 20:42:21.405 R[95066:104626466] XType: Using static font registry.
2024-12-30 20:42:21.422 R[95067:104626467] XType: Using static font registry.
2024-12-30 20:42:22.056 R[95063:104626465] XType: Using static font registry.

Quitting from lines 536-555 [combined_enrichment] (chromstaR.Rnw)
Error: processing vignette 'chromstaR.Rnw' failed with diagnostics:
The given dataset:  rnorvegicus_gene_ensembl , is not valid.  Correct dataset names can be obtained with the listDatasets() function.
--- failed re-building ‘chromstaR.Rnw’

SUMMARY: processing the following file failed:
  ‘chromstaR.Rnw’

Error: Vignette re-building failed.
Execution halted