Pierrick Roger
| Snapshot Date: 2024-07-10 14:00 -0400 (Wed, 10 Jul 2024) |
| git_url: https://git.bioconductor.org/packages/biodbHmdb |
| git_branch: RELEASE_3_19 |
| git_last_commit: a7f41b2 |
| git_last_commit_date: 2024-04-30 11:39:05 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-07-12 17:39 -0400 (Fri, 12 Jul 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4741 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4483 |
| merida1 | macOS 12.7.4 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4512 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4461 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 202/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodbHmdb 1.10.0 (landing page) Pierrick Roger
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | |||||||||
| merida1 | macOS 12.7.4 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
|
To the developers/maintainers of the biodbHmdb package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbHmdb |
| Version: 1.10.0 |
| Command: E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbHmdb.install-out.txt --library=E:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings biodbHmdb_1.10.0.tar.gz |
| StartedAt: 2024-07-11 22:17:56 -0400 (Thu, 11 Jul 2024) |
| EndedAt: 2024-07-11 22:19:23 -0400 (Thu, 11 Jul 2024) |
| EllapsedTime: 87.2 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: biodbHmdb.Rcheck |
| Warnings: 2 |
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###
### Running command:
###
### E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbHmdb.install-out.txt --library=E:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings biodbHmdb_1.10.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'E:/biocbuild/bbs-3.19-bioc/meat/biodbHmdb.Rcheck'
* using R version 4.4.1 (2024-06-14 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.2.0
GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'biodbHmdb/DESCRIPTION' ... OK
* this is package 'biodbHmdb' version '1.10.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbHmdb' can be installed ... WARNING
Found the following significant warnings:
EntryMaker.hpp:23:21: warning: 'EntryMaker::accession_tag' will be initialized after [-Wreorder]
EntryMaker.hpp:22:14: warning: 'bool EntryMaker::closed' [-Wreorder]
EntryMaker.cpp:5:1: warning: when initialized here [-Wreorder]
See 'E:/biocbuild/bbs-3.19-bioc/meat/biodbHmdb.Rcheck/00install.out' for details.
* used C++ compiler: 'G__~1.EXE (GCC) 13.2.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: 'zip'
All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
'HmdbMetabolitesConn' 'HmdbMetabolitesEntry' 'hmdbToSqlite'
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'E:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/libs/x64/biodbHmdb.dll':
Found '_exit', possibly from '_exit' (C)
Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.
See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 WARNINGs, 2 NOTEs
See
'E:/biocbuild/bbs-3.19-bioc/meat/biodbHmdb.Rcheck/00check.log'
for details.
biodbHmdb.Rcheck/00install.out
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###
### Running command:
###
### E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################
* installing to library 'E:/biocbuild/bbs-3.19-bioc/R/library'
* installing *source* package 'biodbHmdb' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 13.2.0'
g++ -std=gnu++17 -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.19-bioc/R/library/testthat/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c EntryMaker.cpp -o EntryMaker.o
In file included from EntryMaker.cpp:1:
EntryMaker.hpp: In constructor 'EntryMaker::EntryMaker()':
EntryMaker.hpp:23:21: warning: 'EntryMaker::accession_tag' will be initialized after [-Wreorder]
23 | TagDetector accession_tag;
| ^~~~~~~~~~~~~
EntryMaker.hpp:22:14: warning: 'bool EntryMaker::closed' [-Wreorder]
22 | bool closed;
| ^~~~~~
EntryMaker.cpp:5:1: warning: when initialized here [-Wreorder]
5 | EntryMaker::EntryMaker() :
| ^~~~~~~~~~
g++ -std=gnu++17 -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.19-bioc/R/library/testthat/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c FileEntryMaker.cpp -o FileEntryMaker.o
g++ -std=gnu++17 -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.19-bioc/R/library/testthat/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.19-bioc/R/library/testthat/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
g++ -std=gnu++17 -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.19-bioc/R/library/testthat/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c TagDetector.cpp -o TagDetector.o
g++ -std=gnu++17 -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.19-bioc/R/library/testthat/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c XmlSplitter.cpp -o XmlSplitter.o
g++ -std=gnu++17 -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.19-bioc/R/library/testthat/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c extractXmlEntries.cpp -o extractXmlEntries.o
g++ -std=gnu++17 -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.19-bioc/R/library/testthat/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c test-100-TagDetector.cpp -o test-100-TagDetector.o
g++ -std=gnu++17 -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.19-bioc/R/library/testthat/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
g++ -std=gnu++17 -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.19-bioc/R/library/testthat/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
g++ -std=gnu++17 -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.19-bioc/R/library/testthat/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c test-runner.cpp -o test-runner.o
g++ -std=gnu++17 -shared -s -static-libgcc -o biodbHmdb.dll tmp.def EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LE:/biocbuild/bbs-3.19-bioc/R/bin/x64 -lR
installing to E:/biocbuild/bbs-3.19-bioc/R/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package 'biodbHmdb'
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)
biodbHmdb.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2024-07-11 22:19:02.299][biodb::testContext]
biodb.INFO [2024-07-11 22:19:02.304][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-11 22:19:02.305][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2024-07-11 22:19:02.307][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-11 22:19:02.308][biodb::testContext]
biodb.INFO [2024-07-11 22:19:02.310][biodb::testThat]
biodb.INFO [2024-07-11 22:19:02.311][biodb::testThat] Running test function test_extractXmlEntries (" extractXmlEntries() works fine. ").
biodb.INFO [2024-07-11 22:19:02.312][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-11 22:19:02.313][biodb::testThat]
biodb.INFO [2024-07-11 22:19:02.487][biodb::testContext]
biodb.INFO [2024-07-11 22:19:02.488][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-11 22:19:02.490][biodb::testContext] Test context - Generic tests
biodb.INFO [2024-07-11 22:19:02.491][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-11 22:19:02.492][biodb::testContext]
biodb.INFO [2024-07-11 22:19:02.504][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-07-11 22:19:02.514][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.19-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-11 22:19:02.522][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-11 22:19:02.524][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-11 22:19:02.525][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-11 22:19:02.526][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:02.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:02.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:02.530][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-11 22:19:02.550][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-11 22:19:02.552][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:02.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:02.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:02.555][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-11 22:19:02.557][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-11 22:19:02.558][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:02.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:02.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:02.561][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-11 22:19:02.563][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-11 22:19:02.564][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-11 22:19:02.565][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:02.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:02.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:02.569][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-11 22:19:02.570][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-11 22:19:02.571][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-11 22:19:02.572][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:02.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:02.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:02.576][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-11 22:19:02.577][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-11 22:19:02.578][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:02.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:02.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:02.582][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-11 22:19:02.583][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-11 22:19:02.584][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-11 22:19:02.586][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:02.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:02.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:02.591][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-11 22:19:02.593][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-11 22:19:02.594][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:02.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:02.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:02.598][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-11 22:19:02.599][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-11 22:19:02.600][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-11 22:19:02.601][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:02.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:02.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:02.606][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-11 22:19:02.608][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-11 22:19:02.610][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-11 22:19:02.611][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-11 22:19:02.612][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-11 22:19:02.614][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-11 22:19:02.615][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:02.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:02.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:02.618][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-11 22:19:02.619][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-11 22:19:02.621][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:02.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:02.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:02.625][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-11 22:19:02.626][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-11 22:19:02.628][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:02.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:02.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:02.631][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-11 22:19:02.632][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-11 22:19:02.633][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:02.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:02.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:02.637][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-11 22:19:02.638][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-11 22:19:02.639][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:02.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:02.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:02.643][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-11 22:19:02.644][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-11 22:19:02.645][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:02.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:02.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:02.648][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-11 22:19:02.650][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-11 22:19:02.653][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-11 22:19:02.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:02.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:02.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:02.657][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-11 22:19:02.659][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-11 22:19:02.660][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-11 22:19:02.661][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:02.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:02.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:02.667][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-11 22:19:02.699][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:02.714][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-11 22:19:02.715][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:02.724][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-11 22:19:02.727][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:02.729][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-11 22:19:02.731][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:02.732][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-11 22:19:02.734][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-11 22:19:02.735][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-11 22:19:02.736][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:02.738][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-11 22:19:02.739][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-11 22:19:02.740][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:02.741][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:02.743][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-11 22:19:02.743][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-11 22:19:02.743][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-11 22:19:02.743][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-11 22:19:02.743][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-11 22:19:02.744][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-11 22:19:02.745][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 22:19:02.746][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 22:19:02.747][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-11 22:19:02.749][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 22:19:02.750][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 22:19:02.751][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-11 22:19:02.752][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:02.753][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-11 22:19:02.754][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-11 22:19:02.756][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:02.758][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:02.760][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-11 22:19:02.763][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:02.765][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-11 22:19:02.767][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:02.769][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-11 22:19:02.771][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:02.773][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-11 22:19:02.775][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:02.777][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-11 22:19:02.779][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-11 22:19:02.781][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-11 22:19:02.783][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:02.785][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-11 22:19:02.786][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-11 22:19:02.788][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:02.790][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:02.792][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-11 22:19:02.792][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-11 22:19:02.792][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-11 22:19:02.792][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-11 22:19:02.792][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-11 22:19:02.794][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-11 22:19:02.796][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 22:19:02.798][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 22:19:02.800][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-11 22:19:02.802][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 22:19:02.804][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 22:19:02.806][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-11 22:19:02.808][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:02.809][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-11 22:19:02.811][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-11 22:19:02.813][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:02.815][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:02.817][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-11 22:19:02.819][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:02.820][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-11 22:19:02.822][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:02.823][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-11 22:19:02.824][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:02.825][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-11 22:19:02.826][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:02.828][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-11 22:19:02.829][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-11 22:19:02.830][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-11 22:19:02.831][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:02.832][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-11 22:19:02.834][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-11 22:19:02.835][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:02.836][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:02.837][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:02.838][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-11 22:19:02.839][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 22:19:02.841][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 22:19:02.842][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-11 22:19:02.843][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 22:19:02.844][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 22:19:02.845][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-11 22:19:02.846][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:02.847][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-11 22:19:02.848][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-11 22:19:02.850][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:02.851][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:02.852][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-11 22:19:02.854][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:02.855][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-11 22:19:02.857][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:02.858][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-11 22:19:02.859][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:02.860][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-11 22:19:02.861][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:02.862][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-11 22:19:02.864][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-11 22:19:02.865][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-11 22:19:02.866][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:02.867][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-11 22:19:02.869][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-11 22:19:02.870][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:02.871][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:02.872][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:02.873][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-11 22:19:02.874][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 22:19:02.875][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 22:19:02.877][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-11 22:19:02.878][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 22:19:02.879][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 22:19:02.880][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-11 22:19:02.881][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:02.882][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-11 22:19:02.884][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-11 22:19:02.885][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:02.886][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:02.889][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-11 22:19:02.891][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:02.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:02.893][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:02.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:02.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:02.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:02.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:02.899][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:02.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:02.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:02.902][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:02.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:02.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:02.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:02.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:02.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:02.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:02.910][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:02.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:02.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:02.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:02.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:02.916][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:02.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:02.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:02.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:02.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:02.921][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:02.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:02.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:02.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:02.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:02.927][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:02.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:02.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:02.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:02.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:02.935][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:02.936][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:02.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:02.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:02.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:02.940][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:02.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:02.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:02.944][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:02.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:02.946][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:02.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:02.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:02.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:02.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:02.951][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:02.952][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:02.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:02.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:02.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:02.957][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:02.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:02.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:02.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:02.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:02.964][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:02.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:02.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:02.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:02.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:02.982][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:02.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:02.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:02.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:02.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:02.991][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:02.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:02.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:02.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:02.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:03.000][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:03.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:03.004][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:03.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:03.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:03.009][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:03.011][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:03.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:03.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:03.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:03.018][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-11 22:19:03.024][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-11 22:19:03.026][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-11 22:19:03.028][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-11 22:19:03.029][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-11 22:19:03.031][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-11 22:19:03.032][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-11 22:19:03.034][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-11 22:19:03.036][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-11 22:19:03.037][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-11 22:19:03.039][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-11 22:19:03.040][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-11 22:19:03.042][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-11 22:19:03.043][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-11 22:19:03.045][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-11 22:19:03.047][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-11 22:19:03.048][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-11 22:19:03.050][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-11 22:19:03.051][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-11 22:19:03.053][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-11 22:19:03.055][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-11 22:19:03.058][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-11 22:19:03.060][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-11 22:19:03.062][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-11 22:19:03.065][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-11 22:19:03.067][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-11 22:19:03.070][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-11 22:19:03.072][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-11 22:19:03.074][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-11 22:19:03.077][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-11 22:19:03.079][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-11 22:19:03.082][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-11 22:19:03.085][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-11 22:19:03.086][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-11 22:19:03.088][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-11 22:19:03.090][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-11 22:19:03.091][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-11 22:19:03.093][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-11 22:19:03.094][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-11 22:19:03.096][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-11 22:19:03.098][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-11 22:19:03.099][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-11 22:19:03.101][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-11 22:19:03.103][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-11 22:19:03.104][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-11 22:19:03.106][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-11 22:19:03.108][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-11 22:19:03.109][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-11 22:19:03.111][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-11 22:19:03.112][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-11 22:19:03.114][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-11 22:19:03.115][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-11 22:19:03.117][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-11 22:19:03.119][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-11 22:19:03.120][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-11 22:19:03.122][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-11 22:19:03.123][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-11 22:19:03.125][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-11 22:19:03.127][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-11 22:19:03.128][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-11 22:19:03.130][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-11 22:19:03.131][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-11 22:19:03.133][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-11 22:19:03.134][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-11 22:19:03.136][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-11 22:19:03.138][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-11 22:19:03.139][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-11 22:19:03.141][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-11 22:19:03.142][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-11 22:19:03.144][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-11 22:19:03.145][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-11 22:19:03.147][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-11 22:19:03.149][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-11 22:19:03.150][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-11 22:19:03.152][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-11 22:19:03.153][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-11 22:19:03.155][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-11 22:19:03.156][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-11 22:19:03.158][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-11 22:19:03.160][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-11 22:19:03.161][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-11 22:19:03.163][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-11 22:19:03.164][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-11 22:19:03.188][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-11 22:19:03.190][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-07-11 22:19:03.193][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-11 22:19:03.195][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:03.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:03.197][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:03.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:03.203][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:03.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:03.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:03.208][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:03.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:03.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:03.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:03.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:03.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:03.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:03.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:03.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:03.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:03.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:03.262][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:03.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:03.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:03.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:03.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:03.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:03.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:03.270][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:03.271][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:03.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:03.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:03.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:03.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:03.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:03.278][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:03.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:03.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:03.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:03.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:03.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:03.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:03.286][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:03.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:03.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:03.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:03.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:03.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:03.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:03.294][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:03.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:03.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:03.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:03.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:03.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:03.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:03.302][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:03.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:03.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:03.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:03.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:03.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:03.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:03.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:03.311][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:03.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:03.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:03.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:03.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:03.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:03.317][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:03.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:03.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:03.321][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:03.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:03.323][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:03.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:03.325][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:03.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:03.327][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:03.328][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:03.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:03.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:03.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:03.333][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:03.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:03.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:03.336][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:03.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:03.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:03.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:03.341][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:03.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:03.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:03.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:03.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:03.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:03.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:03.348][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:03.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:03.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:03.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:03.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:03.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:03.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:03.356][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:03.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:03.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:03.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:03.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:03.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:03.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:03.364][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:03.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:03.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:03.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:03.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:03.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:03.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:03.375][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:03.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:03.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:03.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:03.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:03.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:03.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:03.392][biodb$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-07-11 22:19:03.411][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-07-11 22:19:03.415][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:03.417][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-11 22:19:03.419][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:03.421][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-11 22:19:03.424][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:03.426][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-07-11 22:19:03.428][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:03.430][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-11 22:19:03.432][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-11 22:19:03.434][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-11 22:19:03.436][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:03.438][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-07-11 22:19:03.440][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-11 22:19:03.442][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-07-11 22:19:03.442][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-07-11 22:19:03.442][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-07-11 22:19:03.442][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-07-11 22:19:03.442][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-07-11 22:19:03.442][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-07-11 22:19:03.442][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-07-11 22:19:03.442][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-07-11 22:19:03.442][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-07-11 22:19:03.442][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-07-11 22:19:03.442][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-07-11 22:19:03.442][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-07-11 22:19:03.442][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-07-11 22:19:03.442][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-07-11 22:19:03.442][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-07-11 22:19:03.442][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-07-11 22:19:03.442][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-07-11 22:19:03.442][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-07-11 22:19:03.445][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:03.447][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-11 22:19:03.447][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-07-11 22:19:03.447][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-07-11 22:19:03.449][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-11 22:19:03.451][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 22:19:03.452][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 22:19:03.454][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-11 22:19:03.456][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 22:19:03.458][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 22:19:03.460][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-11 22:19:03.462][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-07-11 22:19:03.462][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-07-11 22:19:03.464][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-11 22:19:03.465][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-11 22:19:03.466][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:03.467][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:03.473][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-07-11 22:19:03.475][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-11 22:19:03.477][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-11 22:19:03.479][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-11 22:19:03.481][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-11 22:19:03.502][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-07-11 22:19:03.503][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-07-11 22:19:03.515][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-07-11 22:19:03.522][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-11 22:19:03.528][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-11 22:19:03.531][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-11 22:19:03.534][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-07-11 22:19:03.536][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-07-11 22:19:03.538][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-07-11 22:19:03.538][self$setPropertyValue] Setting property "urls" to "E:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-07-11 22:19:03.541][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-11 22:19:03.543][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-11 22:19:03.544][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-07-11 22:19:03.546][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-07-11 22:19:03.549][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-07-11 22:19:03.573][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-11 22:19:03.575][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-11 22:19:03.576][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-11 22:19:03.578][private$addConnectorRules] Create new rule for URL "E:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-11 22:19:03.579][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-11 22:19:03.581][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-07-11 22:19:03.590][biodb::testThat]
biodb.INFO [2024-07-11 22:19:03.591][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2024-07-11 22:19:03.593][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-11 22:19:03.594][biodb::testThat]
biodb.TRACE[2024-07-11 22:19:03.681][loadFileContents] Loaded 1 files from cache: [1]: "E:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2024-07-11 22:19:03.684][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-11 22:19:03.688][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-11 22:19:03.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-11 22:19:03.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:03.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:03.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:03.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:03.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:03.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-11 22:19:03.869][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:03.871][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:03.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:03.873][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:03.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:03.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:03.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:03.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:03.891][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:03.892][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:03.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:03.895][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:03.918][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:03.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:03.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:03.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:03.924][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 22:19:03.925][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 22:19:03.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:03.927][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:03.929][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 22:19:03.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 22:19:03.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:03.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:03.934][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 22:19:03.936][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 22:19:03.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:03.938][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:03.940][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 22:19:03.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 22:19:03.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:03.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:03.954][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 22:19:03.955][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 22:19:03.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:03.958][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:03.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 22:19:03.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 22:19:03.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:03.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:03.965][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:03.966][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:03.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:03.968][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:03.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:03.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:03.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:03.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:03.975][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:03.976][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:03.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:03.979][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:03.980][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:03.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:03.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:03.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:03.986][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:03.987][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:03.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:03.989][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:03.991][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:03.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:03.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:03.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:03.996][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:03.997][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:03.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.000][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:04.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:04.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.006][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:04.008][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:04.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.010][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.012][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:04.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:04.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.017][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 22:19:04.018][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 22:19:04.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.020][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.022][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 22:19:04.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 22:19:04.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.027][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 22:19:04.029][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 22:19:04.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.031][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.033][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 22:19:04.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 22:19:04.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.038][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:04.039][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:04.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.042][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.043][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:04.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:04.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.048][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:04.050][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:04.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.052][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:04.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:04.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.059][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:04.060][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:04.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.063][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.064][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:04.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:04.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.069][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:04.071][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:04.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.073][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.075][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:04.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:04.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.080][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 22:19:04.081][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 22:19:04.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.083][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.085][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 22:19:04.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 22:19:04.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.090][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-07-11 22:19:04.092][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:04.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.094][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.096][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-07-11 22:19:04.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:04.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:04.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:04.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:04.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:04.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:04.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:04.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.150][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 22:19:04.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 22:19:04.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.156][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 22:19:04.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 22:19:04.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.161][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 22:19:04.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 22:19:04.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.166][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 22:19:04.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 22:19:04.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.171][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 22:19:04.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 22:19:04.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.176][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 22:19:04.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 22:19:04.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 22:19:04.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 22:19:04.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 22:19:04.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 22:19:04.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 22:19:04.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 22:19:04.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:04.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:04.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:04.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:04.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:04.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:04.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:04.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:04.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.217][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:04.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:04.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:04.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:04.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.227][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:04.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:04.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.232][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:04.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:04.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.237][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:04.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:04.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.242][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:04.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:04.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.249][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:04.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:04.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.257][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:04.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:04.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.265][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:04.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:04.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.273][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:04.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:04.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.281][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:04.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:04.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.289][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 22:19:04.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 22:19:04.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.296][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 22:19:04.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 22:19:04.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.304][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 22:19:04.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 22:19:04.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.312][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 22:19:04.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 22:19:04.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.328][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 22:19:04.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 22:19:04.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 22:19:04.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 22:19:04.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:04.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:04.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.352][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:04.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:04.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.360][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:04.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:04.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.367][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:04.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:04.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.372][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:04.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:04.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.377][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:04.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:04.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.382][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:04.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:04.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.389][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:04.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:04.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.394][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:04.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:04.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.400][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:04.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:04.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.405][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:04.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:04.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.409][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:04.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:04.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.414][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:04.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:04.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.419][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:04.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:04.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.424][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:04.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:04.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.429][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:04.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:04.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.434][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:04.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:04.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.439][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:04.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:04.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.444][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 22:19:04.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 22:19:04.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.449][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 22:19:04.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 22:19:04.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.454][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 22:19:04.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 22:19:04.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.459][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-11 22:19:04.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:04.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.464][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:04.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:04.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.469][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:04.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:04.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.474][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:04.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:04.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.479][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-11 22:19:04.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:04.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.499][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:04.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:04.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.510][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:04.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:04.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.515][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:04.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:04.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.520][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:04.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:04.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.525][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:04.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:04.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.530][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:04.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:04.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.535][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:04.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:04.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:04.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:04.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.545][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:04.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:04.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:04.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:04.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:04.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:04.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:04.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:04.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:04.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:04.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:04.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:04.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:04.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:04.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 22:19:04.580][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2024-07-11 22:19:04.583][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-11 22:19:04.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-11 22:19:04.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.589][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-11 22:19:04.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-11 22:19:04.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.593][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-11 22:19:04.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-11 22:19:04.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.598][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-11 22:19:04.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-11 22:19:04.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:04.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:04.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.670][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:04.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:04.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:04.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:04.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:04.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:04.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:04.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:04.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:04.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:04.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:04.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:04.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:04.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:04.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.715][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:04.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:04.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.720][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:04.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:04.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.725][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:04.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:04.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:04.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:04.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:04.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:04.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:04.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:04.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.778][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:04.779][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:04.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.782][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:04.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:04.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.802][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:04.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:04.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.807][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:04.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:04.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.812][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:04.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:04.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.817][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:04.819][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:04.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.821][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.822][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:04.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:04.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:04.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:04.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:04.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:04.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:04.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:04.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.858][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:04.859][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:04.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.862][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:04.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:04.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.878][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:04.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:04.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.884][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:04.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:04.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.889][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:04.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:04.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.894][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:04.896][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:04.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.898][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.900][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:04.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:04.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 22:19:04.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 22:19:04.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 22:19:04.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 22:19:04.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 22:19:04.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 22:19:04.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.930][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 22:19:04.933][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 22:19:04.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.936][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 22:19:04.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 22:19:04.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.969][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:04.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:04.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.974][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:04.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:04.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.979][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:04.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:04.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.985][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:04.986][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:04.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.988][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:04.990][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:04.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:04.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:04.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.012][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:05.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:05.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.017][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:05.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:05.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.022][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:05.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:05.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.027][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:05.029][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:05.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.031][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.032][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:05.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:05.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.051][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:05.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:05.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.056][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:05.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:05.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.062][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:05.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:05.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.067][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:05.069][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:05.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.071][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.072][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:05.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:05.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.101][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 22:19:05.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 22:19:05.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.110][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 22:19:05.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 22:19:05.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.116][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 22:19:05.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 22:19:05.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.125][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 22:19:05.127][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 22:19:05.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.131][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.133][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 22:19:05.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 22:19:05.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.166][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 22:19:05.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 22:19:05.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.171][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 22:19:05.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 22:19:05.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.176][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 22:19:05.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 22:19:05.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.182][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 22:19:05.183][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 22:19:05.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.185][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.187][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 22:19:05.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 22:19:05.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:05.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:05.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:05.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:05.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.228][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:05.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:05.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.233][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:05.235][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:05.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.237][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:05.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:05.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.277][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:05.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:05.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.283][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:05.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:05.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:05.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:05.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.293][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:05.294][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:05.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.296][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.297][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:05.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:05.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.312][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:05.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:05.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.318][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:05.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:05.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.323][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:05.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:05.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.328][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:05.329][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:05.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.331][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.333][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:05.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:05.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.362][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:05.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:05.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.367][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:05.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:05.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.372][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:05.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:05.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.377][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:05.379][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:05.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.381][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.382][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:05.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:05.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.405][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 22:19:05.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 22:19:05.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.412][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 22:19:05.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 22:19:05.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.421][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 22:19:05.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 22:19:05.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.426][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 22:19:05.427][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 22:19:05.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.430][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.431][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 22:19:05.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 22:19:05.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.456][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 22:19:05.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 22:19:05.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.470][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 22:19:05.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 22:19:05.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.475][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 22:19:05.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 22:19:05.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.481][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 22:19:05.482][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 22:19:05.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.484][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.485][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 22:19:05.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 22:19:05.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.548][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:05.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:05.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.553][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:05.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:05.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.560][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:05.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:05.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.565][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:05.566][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:05.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.569][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.570][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:05.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:05.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.587][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 22:19:05.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 22:19:05.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.592][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 22:19:05.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 22:19:05.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.598][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 22:19:05.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 22:19:05.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.603][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 22:19:05.605][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 22:19:05.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.607][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.608][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 22:19:05.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 22:19:05.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.666][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:05.668][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:05.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.670][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.679][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 22:19:05.681][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 22:19:05.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.685][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.704][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 22:19:05.706][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 22:19:05.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.708][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.720][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 22:19:05.722][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 22:19:05.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.725][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.733][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:05.735][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:05.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.738][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.746][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:05.747][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:05.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.750][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.763][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:05.765][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:05.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.768][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.780][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:05.782][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:05.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.784][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.807][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:05.808][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:05.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.811][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.823][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 22:19:05.824][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 22:19:05.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.827][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.834][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 22:19:05.835][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 22:19:05.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.838][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.852][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:05.854][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:05.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.857][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.864][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:05.866][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:05.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.868][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.878][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:05.879][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:05.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.882][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.889][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:05.890][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:05.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.893][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.908][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:05.909][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:05.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.912][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.922][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:05.924][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:05.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.927][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:05.935][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 22:19:05.936][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 22:19:05.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:05.939][ef$get] fields variable is a list.
biodb.INFO [2024-07-11 22:19:05.958][biodb::testThat]
biodb.INFO [2024-07-11 22:19:05.960][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-07-11 22:19:05.961][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-11 22:19:05.963][biodb::testThat]
biodb.DEBUG[2024-07-11 22:19:05.976][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-07-11 22:19:05.982][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-07-11 22:19:06.154][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 22:19:06.156][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-07-11 22:19:06.159][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-07-11 22:19:06.161][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-11 22:19:06.176][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-07-11 22:19:06.178][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-07-11 22:19:06.210][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-11 22:19:06.212][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-11 22:19:06.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-11 22:19:06.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:06.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:06.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:06.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:06.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:06.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-11 22:19:06.246][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:06.248][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:06.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.250][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:06.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:06.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.259][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:06.260][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:06.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.262][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.264][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:06.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:06.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.270][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 22:19:06.271][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 22:19:06.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.274][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.276][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 22:19:06.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 22:19:06.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.282][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 22:19:06.286][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 22:19:06.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.289][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.291][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 22:19:06.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 22:19:06.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.296][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 22:19:06.298][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 22:19:06.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.301][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 22:19:06.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 22:19:06.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.310][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:06.312][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:06.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.317][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:06.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:06.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.330][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:06.332][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:06.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.337][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.340][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:06.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:06.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.349][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:06.352][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:06.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.355][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.358][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:06.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:06.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.369][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:06.370][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:06.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.373][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.375][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:06.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:06.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.380][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:06.382][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:06.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.384][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.386][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:06.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:06.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.391][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 22:19:06.393][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 22:19:06.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.395][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.397][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 22:19:06.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 22:19:06.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.402][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 22:19:06.403][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 22:19:06.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.405][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 22:19:06.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 22:19:06.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.412][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:06.414][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:06.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.417][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.420][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:06.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:06.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.427][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:06.429][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:06.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.433][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:06.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:06.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.443][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:06.454][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:06.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.458][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.460][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:06.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:06.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.469][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:06.471][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:06.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.475][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.477][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:06.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:06.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.485][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 22:19:06.487][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 22:19:06.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.491][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.494][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 22:19:06.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 22:19:06.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.503][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-07-11 22:19:06.506][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:06.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.509][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.511][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-07-11 22:19:06.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:06.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:06.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:06.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:06.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:06.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:06.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:06.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.532][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 22:19:06.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 22:19:06.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.537][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 22:19:06.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 22:19:06.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.543][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 22:19:06.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 22:19:06.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.550][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 22:19:06.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 22:19:06.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.557][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 22:19:06.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 22:19:06.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.565][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 22:19:06.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 22:19:06.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 22:19:06.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 22:19:06.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 22:19:06.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 22:19:06.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 22:19:06.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 22:19:06.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:06.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:06.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:06.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:06.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:06.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:06.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:06.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:06.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.606][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:06.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:06.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:06.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:06.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.616][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:06.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:06.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.621][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:06.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:06.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:06.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:06.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.631][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:06.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:06.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.636][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:06.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:06.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.641][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:06.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:06.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.646][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:06.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:06.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.653][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:06.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:06.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.669][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:06.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:06.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.677][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 22:19:06.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 22:19:06.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.686][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 22:19:06.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 22:19:06.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.694][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 22:19:06.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 22:19:06.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.702][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 22:19:06.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 22:19:06.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.710][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 22:19:06.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 22:19:06.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.718][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 22:19:06.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 22:19:06.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.726][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:06.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:06.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.734][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:06.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:06.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.742][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:06.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:06.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.750][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:06.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:06.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.758][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:06.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:06.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.767][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:06.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:06.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:06.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:06.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:06.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:06.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:06.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:06.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.799][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:06.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:06.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.807][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:06.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:06.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.815][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:06.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:06.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.824][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:06.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:06.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.831][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:06.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:06.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.839][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:06.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:06.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.847][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:06.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:06.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.855][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:06.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:06.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.863][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:06.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:06.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.871][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 22:19:06.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 22:19:06.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.879][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 22:19:06.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 22:19:06.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.887][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 22:19:06.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 22:19:06.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.895][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-11 22:19:06.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:06.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.903][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:06.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:06.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.911][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:06.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:06.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.919][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:06.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:06.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.927][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-11 22:19:06.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:06.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.941][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:06.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:06.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.947][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:06.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:06.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.953][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:06.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:06.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.958][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:06.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:06.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.963][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:06.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:06.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.968][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:06.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:06.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.973][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:06.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:06.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:06.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:06.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.984][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:06.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:06.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:06.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:06.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:06.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:06.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:06.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:06.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:07.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:07.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:07.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:07.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:07.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:07.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:07.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:07.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:07.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:07.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:07.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:07.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:07.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:07.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:07.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 22:19:07.020][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-07-11 22:19:07.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-07-11 22:19:07.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-07-11 22:19:07.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:07.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:07.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-07-11 22:19:07.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-07-11 22:19:07.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:07.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:07.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-07-11 22:19:07.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-07-11 22:19:07.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:07.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-11 22:19:07.048][biodb::testThat]
biodb.INFO [2024-07-11 22:19:07.050][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2024-07-11 22:19:07.051][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-11 22:19:07.052][biodb::testThat]
biodb.TRACE[2024-07-11 22:19:07.056][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:07.057][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:07.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:07.060][ef$get] fields variable is a list.
biodb.DEBUG[2024-07-11 22:19:07.062][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2024-07-11 22:19:07.094][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:07.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:07.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:07.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:07.100][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:07.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:07.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:07.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:07.105][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:07.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:07.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:07.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 22:19:07.118][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2024-07-11 22:19:07.120][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-07-11 22:19:07.121][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-07-11 22:19:07.123][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-07-11 22:19:07.125][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 22:19:07.127][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 22:19:07.129][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-11 22:19:07.131][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 22:19:07.132][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-11 22:19:07.134][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-11 22:19:07.136][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-11 22:19:07.138][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-11 22:19:07.140][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-11 22:19:07.142][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-11 22:19:07.144][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-07-11 22:19:07.147][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:07.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:07.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:07.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:07.156][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:07.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:07.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:07.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:07.164][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:07.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:07.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:07.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:07.172][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:07.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:07.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:07.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 22:19:07.180][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-11 22:19:07.182][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-11 22:19:07.184][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-07-11 22:19:07.234][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:07.236][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:07.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:07.238][ef$get] fields variable is a list.
biodb.DEBUG[2024-07-11 22:19:07.240][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2024-07-11 22:19:07.272][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:07.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:07.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:07.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:07.282][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:07.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:07.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:07.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:07.291][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:07.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:07.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:07.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 22:19:07.308][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2024-07-11 22:19:07.401][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-07-11 22:19:07.403][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-07-11 22:19:07.405][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-07-11 22:19:07.426][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 22:19:07.430][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 22:19:07.433][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-11 22:19:07.436][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 22:19:07.438][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-11 22:19:07.460][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-11 22:19:07.462][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-11 22:19:07.464][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-11 22:19:07.467][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-11 22:19:07.469][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-11 22:19:07.471][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-07-11 22:19:07.474][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:07.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:07.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:07.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:07.482][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:07.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:07.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:07.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:07.490][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:07.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:07.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:07.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:07.498][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:07.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:07.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:07.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 22:19:07.505][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-11 22:19:07.507][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-11 22:19:07.509][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-07-11 22:19:07.703][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:07.705][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:07.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:07.708][ef$get] fields variable is a list.
biodb.DEBUG[2024-07-11 22:19:07.710][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2024-07-11 22:19:07.747][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:07.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:07.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:07.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:07.753][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:07.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:07.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:07.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:07.758][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:07.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:07.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:07.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 22:19:07.766][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2024-07-11 22:19:07.769][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2024-07-11 22:19:07.770][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-07-11 22:19:07.771][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-07-11 22:19:07.773][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 22:19:07.776][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 22:19:07.779][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-11 22:19:07.791][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 22:19:07.793][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-11 22:19:07.796][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-11 22:19:07.798][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-11 22:19:07.800][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-11 22:19:07.803][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-11 22:19:07.805][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-11 22:19:07.807][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-07-11 22:19:07.811][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:07.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:07.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:07.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:07.820][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:07.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:07.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:07.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:07.828][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:07.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:07.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:07.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:07.836][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:07.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:07.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:07.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 22:19:07.841][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-11 22:19:07.843][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-11 22:19:07.844][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2024-07-11 22:19:07.895][biodb::testThat]
biodb.INFO [2024-07-11 22:19:07.897][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2024-07-11 22:19:07.898][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-11 22:19:07.900][biodb::testThat]
biodb.TRACE[2024-07-11 22:19:07.935][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:07.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:07.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:07.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:07.944][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:07.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:07.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:07.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:07.952][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:07.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:07.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:07.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 22:19:07.970][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-07-11 22:19:07.971][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-07-11 22:19:07.972][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-07-11 22:19:07.975][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 22:19:07.977][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 22:19:07.979][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-11 22:19:07.982][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 22:19:07.983][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-11 22:19:07.985][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-11 22:19:07.986][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-11 22:19:07.987][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-11 22:19:07.989][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-11 22:19:07.990][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-11 22:19:07.991][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-07-11 22:19:07.993][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:07.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:07.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:07.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:07.999][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:08.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:08.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:08.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:08.004][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:08.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:08.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:08.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:08.009][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:08.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:08.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:08.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 22:19:08.014][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-11 22:19:08.015][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2024-07-11 22:19:08.056][biodb::testThat]
biodb.INFO [2024-07-11 22:19:08.057][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2024-07-11 22:19:08.059][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-11 22:19:08.060][biodb::testThat]
biodb.TRACE[2024-07-11 22:19:08.097][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-11 22:19:08.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-11 22:19:08.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:08.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:08.103][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-11 22:19:08.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-11 22:19:08.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:08.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:08.108][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-11 22:19:08.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-11 22:19:08.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:08.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:08.113][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-11 22:19:08.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-11 22:19:08.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:08.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:08.158][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-11 22:19:08.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-11 22:19:08.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:08.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:08.167][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-11 22:19:08.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-11 22:19:08.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:08.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:08.175][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-11 22:19:08.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-11 22:19:08.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:08.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:08.183][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-11 22:19:08.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-11 22:19:08.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:08.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-11 22:19:08.212][biodb::testThat]
biodb.INFO [2024-07-11 22:19:08.214][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-07-11 22:19:08.216][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-11 22:19:08.217][biodb::testThat]
biodb.INFO [2024-07-11 22:19:08.234][biodb::testThat]
biodb.INFO [2024-07-11 22:19:08.236][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-07-11 22:19:08.238][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-11 22:19:08.240][biodb::testThat]
biodb.INFO [2024-07-11 22:19:08.263][biodb::testThat]
biodb.INFO [2024-07-11 22:19:08.264][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2024-07-11 22:19:08.265][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-11 22:19:08.266][biodb::testThat]
biodb.DEBUG[2024-07-11 22:19:08.271][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2024-07-11 22:19:10.179][getUrlContent] Use base::url() for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2024-07-11 22:19:11.377][biodb::testThat]
biodb.INFO [2024-07-11 22:19:11.379][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2024-07-11 22:19:11.380][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-11 22:19:11.381][biodb::testThat]
biodb.DEBUG[2024-07-11 22:19:11.574][getUrlContent] Use base::url() for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2024-07-11 22:19:11.915][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:11.917][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:11.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:11.919][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:11.921][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:11.922][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:11.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:11.925][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:11.926][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:11.927][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:11.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:11.930][ef$get] fields variable is a list.
biodb.INFO [2024-07-11 22:19:11.932][biodb::testThat]
biodb.INFO [2024-07-11 22:19:11.933][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2024-07-11 22:19:11.934][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-11 22:19:11.936][biodb::testThat]
biodb.DEBUG[2024-07-11 22:19:11.938][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2024-07-11 22:19:11.979][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-07-11 22:19:11.982][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 22:19:11.984][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-07-11 22:19:11.999][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2024-07-11 22:19:12.033][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-11 22:19:12.035][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-11 22:19:12.037][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-07-11 22:19:12.039][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 22:19:12.041][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-11 22:19:12.043][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-11 22:19:12.045][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-11 22:19:12.046][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:12.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:12.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:12.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:12.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:12.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-11 22:19:12.076][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:12.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:12.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:12.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:12.081][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:12.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:12.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:12.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:12.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:12.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:12.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:12.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:12.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:12.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:12.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:12.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:12.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:12.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:12.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:12.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:12.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:12.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:12.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:12.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:12.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:12.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:12.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:12.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:12.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:12.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:12.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:12.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 22:19:12.122][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-07-11 22:19:12.124][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2024-07-11 22:19:12.182][biodb::testThat]
biodb.INFO [2024-07-11 22:19:12.183][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2024-07-11 22:19:12.184][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-11 22:19:12.186][biodb::testThat]
biodb.DEBUG[2024-07-11 22:19:12.196][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2024-07-11 22:19:12.198][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2024-07-11 22:19:12.199][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-07-11 22:19:12.201][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 22:19:12.203][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-07-11 22:19:12.206][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2024-07-11 22:19:12.208][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-11 22:19:12.209][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-11 22:19:12.211][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-07-11 22:19:12.212][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 22:19:12.214][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-11 22:19:12.215][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-11 22:19:12.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-11 22:19:12.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:12.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:12.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:12.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:12.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:12.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-11 22:19:12.232][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:12.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:12.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:12.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:12.244][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:12.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:12.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:12.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:12.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:12.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:12.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:12.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:12.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:12.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:12.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:12.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:12.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:12.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:12.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:12.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:12.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:12.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:12.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:12.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:12.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:12.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:12.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:12.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:12.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:12.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:12.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:12.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 22:19:12.280][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-07-11 22:19:12.281][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2024-07-11 22:19:12.282][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2024-07-11 22:19:12.353][biodb::testThat]
biodb.INFO [2024-07-11 22:19:12.355][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2024-07-11 22:19:12.356][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-11 22:19:12.357][biodb::testThat]
biodb.INFO [2024-07-11 22:19:12.386][biodb::testThat]
biodb.INFO [2024-07-11 22:19:12.388][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2024-07-11 22:19:12.389][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-11 22:19:12.390][biodb::testThat]
biodb.DEBUG[2024-07-11 22:19:12.394][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 22:19:12.396][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 22:19:12.398][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-11 22:19:12.400][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 22:19:12.401][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-11 22:19:12.403][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-11 22:19:12.405][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-11 22:19:12.406][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-11 22:19:12.407][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2024-07-11 22:19:12.420][biodb::testThat]
biodb.INFO [2024-07-11 22:19:12.421][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2024-07-11 22:19:12.422][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-11 22:19:12.424][biodb::testThat]
biodb.DEBUG[2024-07-11 22:19:12.427][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 22:19:12.429][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 22:19:12.431][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-11 22:19:12.433][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 22:19:12.434][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-11 22:19:12.435][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-11 22:19:12.437][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-11 22:19:12.438][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-11 22:19:12.445][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2024-07-11 22:19:12.465][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:12.467][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:12.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:12.470][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:12.471][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:12.473][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:12.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:12.476][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:12.477][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:12.479][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:12.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:12.481][ef$get] fields variable is a list.
biodb.INFO [2024-07-11 22:19:12.482][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-11 22:19:12.484][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-07-11 22:19:12.492][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-07-11 22:19:12.493][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-11 22:19:12.494][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:12.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:12.497][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:12.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:12.500][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:12.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-11 22:19:12.506][biodb::testContext]
biodb.INFO [2024-07-11 22:19:12.508][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-11 22:19:12.509][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2024-07-11 22:19:12.510][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-11 22:19:12.511][biodb::testContext]
biodb.INFO [2024-07-11 22:19:12.520][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-07-11 22:19:12.524][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.19-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-11 22:19:12.531][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-11 22:19:12.533][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-11 22:19:12.534][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-11 22:19:12.535][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:12.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:12.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:12.539][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-11 22:19:12.540][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-11 22:19:12.541][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:12.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:12.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:12.545][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-11 22:19:12.546][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-11 22:19:12.547][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:12.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:12.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:12.551][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-11 22:19:12.552][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-11 22:19:12.553][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-11 22:19:12.554][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:12.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:12.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:12.558][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-11 22:19:12.559][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-11 22:19:12.560][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-11 22:19:12.561][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:12.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:12.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:12.564][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-11 22:19:12.566][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-11 22:19:12.567][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:12.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:12.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:12.570][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-11 22:19:12.572][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-11 22:19:12.573][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-11 22:19:12.574][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:12.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:12.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:12.578][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-11 22:19:12.579][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-11 22:19:12.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:12.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:12.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:12.583][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-11 22:19:12.585][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-11 22:19:12.586][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-11 22:19:12.587][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:12.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:12.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:12.590][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-11 22:19:12.592][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-11 22:19:12.593][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-11 22:19:12.594][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-11 22:19:12.595][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-11 22:19:12.597][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-11 22:19:12.598][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:12.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:12.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:12.609][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-11 22:19:12.610][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-11 22:19:12.611][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:12.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:12.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:12.615][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-11 22:19:12.616][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-11 22:19:12.617][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:12.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:12.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:12.621][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-11 22:19:12.622][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-11 22:19:12.623][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:12.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:12.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:12.627][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-11 22:19:12.628][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-11 22:19:12.629][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:12.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:12.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:12.632][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-11 22:19:12.634][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-11 22:19:12.635][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:12.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:12.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:12.638][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-11 22:19:12.640][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-11 22:19:12.643][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-11 22:19:12.644][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:12.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:12.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:12.648][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-11 22:19:12.649][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-11 22:19:12.651][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-11 22:19:12.652][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:12.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:12.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:12.655][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-11 22:19:12.657][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:12.658][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-11 22:19:12.660][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:12.661][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-11 22:19:12.662][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:12.663][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-11 22:19:12.665][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:12.666][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-11 22:19:12.667][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-11 22:19:12.668][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-11 22:19:12.670][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:12.671][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-11 22:19:12.672][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-11 22:19:12.673][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:12.675][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:12.676][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-11 22:19:12.676][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-11 22:19:12.676][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-11 22:19:12.676][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-11 22:19:12.676][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-11 22:19:12.677][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-11 22:19:12.678][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 22:19:12.679][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 22:19:12.681][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-11 22:19:12.682][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 22:19:12.683][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 22:19:12.684][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-11 22:19:12.685][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:12.686][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-11 22:19:12.688][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-11 22:19:12.689][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:12.690][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:12.691][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-11 22:19:12.693][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:12.695][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-11 22:19:12.696][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:12.697][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-11 22:19:12.698][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:12.700][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-11 22:19:12.701][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:12.702][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-11 22:19:12.703][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-11 22:19:12.705][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-11 22:19:12.706][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:12.707][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-11 22:19:12.708][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-11 22:19:12.709][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:12.711][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:12.712][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-11 22:19:12.712][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-11 22:19:12.712][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-11 22:19:12.712][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-11 22:19:12.712][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-11 22:19:12.713][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-11 22:19:12.714][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 22:19:12.715][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 22:19:12.717][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-11 22:19:12.718][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 22:19:12.719][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 22:19:12.720][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-11 22:19:12.721][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:12.723][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-11 22:19:12.724][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-11 22:19:12.725][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:12.726][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:12.727][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-11 22:19:12.729][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:12.731][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-11 22:19:12.732][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:12.733][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-11 22:19:12.741][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:12.744][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-11 22:19:12.745][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:12.747][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-11 22:19:12.748][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-11 22:19:12.749][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-11 22:19:12.750][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:12.752][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-11 22:19:12.753][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-11 22:19:12.754][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:12.755][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:12.757][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:12.758][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-11 22:19:12.759][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 22:19:12.760][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 22:19:12.761][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-11 22:19:12.763][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 22:19:12.764][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 22:19:12.765][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-11 22:19:12.766][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:12.768][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-11 22:19:12.769][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-11 22:19:12.770][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:12.771][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:12.773][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-11 22:19:12.775][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:12.776][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-11 22:19:12.777][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:12.778][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-11 22:19:12.780][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:12.781][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-11 22:19:12.782][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:12.784][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-11 22:19:12.785][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-11 22:19:12.786][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-11 22:19:12.787][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:12.789][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-11 22:19:12.790][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-11 22:19:12.791][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:12.792][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:12.793][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:12.795][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-11 22:19:12.796][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 22:19:12.797][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 22:19:12.798][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-11 22:19:12.800][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 22:19:12.801][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 22:19:12.803][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-11 22:19:12.804][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:12.805][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-11 22:19:12.806][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-11 22:19:12.807][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:12.808][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:12.810][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-11 22:19:12.811][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:12.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:12.814][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:12.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:12.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:12.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:12.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:12.819][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:12.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:12.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:12.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:12.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:12.825][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:12.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:12.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:12.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:12.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:12.830][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:12.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:12.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:12.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:12.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:12.839][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:12.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:12.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:12.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:12.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:12.849][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:12.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:12.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:12.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:12.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:12.855][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:12.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:12.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:12.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:12.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:12.860][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:12.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:12.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:12.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:12.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:12.868][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:12.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:12.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:12.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:12.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:12.877][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:12.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:12.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:12.882][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:12.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:12.886][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:12.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:12.898][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:12.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:12.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:12.905][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:12.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:12.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:12.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:12.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:12.914][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:12.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:12.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:12.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:12.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:12.923][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:12.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:12.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:12.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:12.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:12.932][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:12.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:12.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:12.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:12.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:12.941][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:12.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:12.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:12.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:12.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:12.950][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:12.952][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:12.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:12.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:12.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:12.959][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-11 22:19:12.962][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-11 22:19:12.964][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-11 22:19:12.967][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-11 22:19:12.969][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-11 22:19:12.971][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-11 22:19:12.972][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-11 22:19:12.974][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-11 22:19:12.976][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-11 22:19:12.977][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-11 22:19:12.979][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-11 22:19:12.980][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-11 22:19:12.982][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-11 22:19:12.984][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-11 22:19:12.985][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-11 22:19:12.987][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-11 22:19:12.990][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-11 22:19:12.993][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-11 22:19:12.995][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-11 22:19:12.998][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-11 22:19:13.001][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-11 22:19:13.003][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-11 22:19:13.006][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-11 22:19:13.009][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-11 22:19:13.011][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-11 22:19:13.013][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-11 22:19:13.015][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-11 22:19:13.017][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-11 22:19:13.018][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-11 22:19:13.020][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-11 22:19:13.022][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-11 22:19:13.024][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-11 22:19:13.025][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-11 22:19:13.027][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-11 22:19:13.029][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-11 22:19:13.031][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-11 22:19:13.033][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-11 22:19:13.035][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-11 22:19:13.037][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-11 22:19:13.038][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-11 22:19:13.040][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-11 22:19:13.042][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-11 22:19:13.044][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-11 22:19:13.046][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-11 22:19:13.048][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-11 22:19:13.049][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-11 22:19:13.051][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-11 22:19:13.053][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-11 22:19:13.055][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-11 22:19:13.057][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-11 22:19:13.068][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-11 22:19:13.072][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-11 22:19:13.075][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-11 22:19:13.078][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-11 22:19:13.080][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-11 22:19:13.083][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-11 22:19:13.086][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-11 22:19:13.089][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-11 22:19:13.092][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-11 22:19:13.095][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-11 22:19:13.098][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-11 22:19:13.101][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-11 22:19:13.104][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-11 22:19:13.107][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-11 22:19:13.110][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-11 22:19:13.113][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-11 22:19:13.116][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-11 22:19:13.119][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-11 22:19:13.122][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-11 22:19:13.125][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-11 22:19:13.127][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-11 22:19:13.130][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-11 22:19:13.133][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-11 22:19:13.136][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-11 22:19:13.138][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-11 22:19:13.140][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-11 22:19:13.142][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-11 22:19:13.144][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-11 22:19:13.145][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-11 22:19:13.147][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-11 22:19:13.148][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-11 22:19:13.150][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-11 22:19:13.152][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-11 22:19:13.153][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-11 22:19:13.156][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-07-11 22:19:13.157][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-11 22:19:13.158][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:13.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:13.161][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:13.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:13.163][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:13.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:13.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:13.166][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:13.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:13.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:13.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:13.171][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:13.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:13.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:13.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:13.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:13.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:13.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:13.179][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:13.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:13.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:13.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:13.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:13.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:13.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:13.187][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:13.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:13.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:13.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:13.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:13.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:13.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:13.195][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:13.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:13.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:13.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:13.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:13.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:13.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:13.203][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:13.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:13.205][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:13.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:13.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:13.208][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:13.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:13.211][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:13.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:13.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:13.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:13.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:13.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:13.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:13.220][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:13.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:13.229][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:13.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:13.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:13.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:13.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:13.235][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:13.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:13.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:13.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:13.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:13.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:13.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:13.244][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:13.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:13.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:13.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:13.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:13.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:13.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:13.252][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:13.253][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:13.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:13.255][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:13.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:13.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:13.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:13.260][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:13.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:13.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:13.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:13.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:13.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:13.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:13.269][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:13.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:13.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:13.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:13.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:13.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:13.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:13.277][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:13.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:13.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:13.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:13.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:13.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:13.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:13.286][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:13.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:13.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:13.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:13.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:13.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:13.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:13.294][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:13.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:13.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:13.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:13.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:13.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:13.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:13.302][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:13.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:13.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:13.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:13.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:13.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:13.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:13.312][biodb$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-07-11 22:19:13.314][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-07-11 22:19:13.316][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:13.317][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-11 22:19:13.319][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:13.320][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-11 22:19:13.321][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:13.323][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-07-11 22:19:13.324][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:13.325][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-11 22:19:13.326][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-11 22:19:13.328][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-11 22:19:13.329][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:13.330][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-07-11 22:19:13.331][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-11 22:19:13.333][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-07-11 22:19:13.333][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-07-11 22:19:13.333][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-07-11 22:19:13.333][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-07-11 22:19:13.333][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-07-11 22:19:13.333][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-07-11 22:19:13.333][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-07-11 22:19:13.333][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-07-11 22:19:13.333][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-07-11 22:19:13.333][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-07-11 22:19:13.333][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-07-11 22:19:13.333][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-07-11 22:19:13.333][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-07-11 22:19:13.333][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-07-11 22:19:13.333][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-07-11 22:19:13.333][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-07-11 22:19:13.333][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-07-11 22:19:13.333][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-07-11 22:19:13.334][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:13.336][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-11 22:19:13.336][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-07-11 22:19:13.336][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-07-11 22:19:13.337][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-11 22:19:13.338][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 22:19:13.339][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 22:19:13.341][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-11 22:19:13.342][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 22:19:13.343][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 22:19:13.344][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-11 22:19:13.346][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-07-11 22:19:13.346][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-07-11 22:19:13.347][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-11 22:19:13.348][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-11 22:19:13.350][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:13.351][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:13.353][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-07-11 22:19:13.354][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-11 22:19:13.356][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-11 22:19:13.358][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-11 22:19:13.360][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-11 22:19:13.370][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-07-11 22:19:13.372][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-07-11 22:19:13.373][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-07-11 22:19:13.375][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-11 22:19:13.377][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-11 22:19:13.378][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-11 22:19:13.380][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-07-11 22:19:13.381][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-07-11 22:19:13.383][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-07-11 22:19:13.383][self$setPropertyValue] Setting property "urls" to "E:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-07-11 22:19:13.384][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-11 22:19:13.385][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-11 22:19:13.386][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-07-11 22:19:13.388][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-07-11 22:19:13.389][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-07-11 22:19:13.391][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-11 22:19:13.393][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-11 22:19:13.394][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-11 22:19:13.396][private$addConnectorRules] Create new rule for URL "E:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-11 22:19:13.398][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-11 22:19:13.399][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-07-11 22:19:13.401][biodb::testThat]
biodb.INFO [2024-07-11 22:19:13.402][biodb::testThat] Running test function test.hmdbmetabolite.nbentries (" HMDB metabolite returns enough entries. ").
biodb.INFO [2024-07-11 22:19:13.403][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-11 22:19:13.405][biodb::testThat]
biodb.DEBUG[2024-07-11 22:19:13.411][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 22:19:13.413][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 22:19:13.415][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-11 22:19:13.417][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 22:19:13.418][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-11 22:19:13.420][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-11 22:19:13.421][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-11 22:19:13.422][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-11 22:19:13.424][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-11 22:19:13.428][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2024-07-11 22:19:13.437][biodb::testThat]
biodb.INFO [2024-07-11 22:19:13.438][biodb::testThat] Running test function test.old.accession (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2024-07-11 22:19:13.440][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-11 22:19:13.441][biodb::testThat]
biodb.DEBUG[2024-07-11 22:19:13.444][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-07-11 22:19:13.446][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-07-11 22:19:13.448][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 22:19:13.450][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-07-11 22:19:13.454][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-07-11 22:19:13.456][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-11 22:19:13.474][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-07-11 22:19:13.476][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-07-11 22:19:13.477][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-11 22:19:13.479][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-11 22:19:13.481][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-11 22:19:13.482][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:13.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:13.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:13.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:13.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:13.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-11 22:19:13.500][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:13.501][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:13.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.504][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:13.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:13.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.512][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:13.513][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:13.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.516][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.518][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:13.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:13.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.524][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 22:19:13.525][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 22:19:13.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.527][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.529][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 22:19:13.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 22:19:13.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.535][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 22:19:13.537][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 22:19:13.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.547][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.549][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 22:19:13.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 22:19:13.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.556][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 22:19:13.557][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 22:19:13.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.560][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 22:19:13.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 22:19:13.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.568][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:13.569][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:13.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.571][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:13.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:13.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.578][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:13.580][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:13.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.583][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.585][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:13.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:13.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.591][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:13.592][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:13.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.595][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.598][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:13.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:13.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.607][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:13.609][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:13.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.613][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:13.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:13.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.624][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:13.626][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:13.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.629][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:13.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:13.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.640][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 22:19:13.642][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 22:19:13.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.646][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.649][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 22:19:13.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 22:19:13.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.657][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 22:19:13.659][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 22:19:13.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.663][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.666][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 22:19:13.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 22:19:13.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.674][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:13.677][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:13.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.681][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:13.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:13.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.692][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:13.694][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:13.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.698][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:13.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:13.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.710][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:13.712][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:13.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.716][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.719][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:13.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:13.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.727][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:13.730][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:13.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.734][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.736][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:13.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:13.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.756][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 22:19:13.758][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 22:19:13.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.763][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.765][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 22:19:13.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 22:19:13.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.775][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-07-11 22:19:13.777][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:13.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.781][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.784][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-07-11 22:19:13.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:13.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:13.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:13.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:13.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:13.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:13.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:13.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.817][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 22:19:13.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 22:19:13.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.822][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 22:19:13.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 22:19:13.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.827][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 22:19:13.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 22:19:13.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.832][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 22:19:13.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 22:19:13.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.837][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 22:19:13.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 22:19:13.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.842][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 22:19:13.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 22:19:13.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 22:19:13.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 22:19:13.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 22:19:13.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 22:19:13.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 22:19:13.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 22:19:13.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:13.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:13.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:13.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:13.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:13.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:13.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:13.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:13.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:13.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:13.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.887][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:13.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:13.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.892][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:13.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:13.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.897][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:13.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:13.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.902][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:13.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:13.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.914][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:13.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:13.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:13.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:13.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.924][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:13.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:13.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.929][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:13.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:13.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.934][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:13.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:13.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.939][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:13.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:13.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.944][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 22:19:13.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 22:19:13.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.949][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 22:19:13.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 22:19:13.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.955][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 22:19:13.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 22:19:13.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.960][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 22:19:13.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 22:19:13.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.965][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 22:19:13.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 22:19:13.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.970][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 22:19:13.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 22:19:13.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.975][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:13.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:13.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.980][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:13.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:13.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.985][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:13.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:13.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.990][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:13.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:13.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:13.995][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:13.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:13.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:13.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:14.000][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:14.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:14.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:14.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:14.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:14.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:14.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:14.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:14.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:14.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:14.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:14.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:14.015][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:14.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:14.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:14.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:14.022][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:14.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:14.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:14.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:14.030][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:14.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:14.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:14.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:14.036][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:14.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:14.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:14.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:14.041][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:14.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:14.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:14.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:14.051][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:14.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:14.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:14.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:14.057][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:14.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:14.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:14.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:14.062][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:14.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:14.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:14.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:14.070][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:14.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:14.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:14.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:14.079][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:14.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:14.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:14.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:14.087][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 22:19:14.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 22:19:14.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:14.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:14.094][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 22:19:14.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 22:19:14.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:14.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:14.100][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 22:19:14.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 22:19:14.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:14.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:14.104][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-11 22:19:14.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:14.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:14.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:14.109][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:14.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:14.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:14.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:14.114][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:14.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:14.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:14.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:14.120][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:14.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:14.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:14.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:14.125][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-11 22:19:14.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:14.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:14.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:14.131][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:14.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:14.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:14.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:14.136][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:14.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:14.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:14.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:14.141][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:14.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:14.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:14.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:14.146][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:14.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:14.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:14.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:14.151][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:14.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:14.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:14.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:14.156][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:14.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:14.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:14.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:14.162][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:14.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:14.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:14.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:14.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:14.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:14.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:14.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:14.179][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:14.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:14.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:14.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:14.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:14.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:14.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:14.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:14.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:14.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:14.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:14.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:14.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:14.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:14.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:14.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:14.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:14.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:14.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:14.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:14.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:14.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:14.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:14.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:14.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:14.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:14.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:14.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 22:19:14.238][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-07-11 22:19:14.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:14.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:14.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:14.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:14.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:14.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:14.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:14.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:14.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:14.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:14.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:14.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-11 22:19:14.294][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-11 22:19:14.296][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-07-11 22:19:14.297][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-07-11 22:19:14.299][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-11 22:19:14.300][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:14.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:14.302][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:14.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:14.304][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-11 22:19:14.311][biodb::testContext]
biodb.INFO [2024-07-11 22:19:14.312][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-11 22:19:14.313][biodb::testContext] Test context - Test search of entries
biodb.INFO [2024-07-11 22:19:14.315][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-11 22:19:14.316][biodb::testContext]
biodb.INFO [2024-07-11 22:19:14.326][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-07-11 22:19:14.330][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.19-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-11 22:19:14.339][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-11 22:19:14.342][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-11 22:19:14.344][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-11 22:19:14.345][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:14.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:14.351][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-11 22:19:14.353][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-11 22:19:14.355][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:14.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:14.360][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-11 22:19:14.362][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-11 22:19:14.364][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:14.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:14.370][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-11 22:19:14.372][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-11 22:19:14.374][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-11 22:19:14.376][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:14.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:14.382][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-11 22:19:14.384][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-11 22:19:14.386][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-11 22:19:14.388][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:14.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:14.394][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-11 22:19:14.396][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-11 22:19:14.398][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:14.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:14.403][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-11 22:19:14.405][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-11 22:19:14.407][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-11 22:19:14.409][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:14.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:14.415][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-11 22:19:14.417][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-11 22:19:14.419][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:14.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:14.425][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-11 22:19:14.427][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-11 22:19:14.429][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-11 22:19:14.431][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:14.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:14.437][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-11 22:19:14.448][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-11 22:19:14.451][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-11 22:19:14.453][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-11 22:19:14.455][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-11 22:19:14.457][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-11 22:19:14.459][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:14.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:14.465][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-11 22:19:14.467][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-11 22:19:14.469][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:14.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:14.474][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-11 22:19:14.476][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-11 22:19:14.478][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:14.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:14.484][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-11 22:19:14.486][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-11 22:19:14.488][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:14.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:14.494][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-11 22:19:14.496][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-11 22:19:14.498][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:14.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:14.503][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-11 22:19:14.505][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-11 22:19:14.507][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:14.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:14.511][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-11 22:19:14.512][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-11 22:19:14.515][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-11 22:19:14.517][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:14.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:14.520][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-11 22:19:14.521][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-11 22:19:14.523][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-11 22:19:14.524][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:14.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:14.527][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-11 22:19:14.530][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:14.531][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-11 22:19:14.532][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:14.533][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-11 22:19:14.535][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:14.536][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-11 22:19:14.537][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:14.538][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-11 22:19:14.540][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-11 22:19:14.541][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-11 22:19:14.542][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:14.543][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-11 22:19:14.545][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-11 22:19:14.546][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:14.547][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:14.548][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-11 22:19:14.548][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-11 22:19:14.548][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-11 22:19:14.548][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-11 22:19:14.548][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-11 22:19:14.550][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-11 22:19:14.551][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 22:19:14.552][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 22:19:14.553][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-11 22:19:14.554][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 22:19:14.556][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 22:19:14.557][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-11 22:19:14.558][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:14.559][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-11 22:19:14.561][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-11 22:19:14.562][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:14.563][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:14.565][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-11 22:19:14.567][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:14.568][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-11 22:19:14.569][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:14.570][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-11 22:19:14.572][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:14.573][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-11 22:19:14.574][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:14.576][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-11 22:19:14.577][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-11 22:19:14.578][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-11 22:19:14.579][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:14.580][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-11 22:19:14.582][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-11 22:19:14.583][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:14.584][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:14.585][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-11 22:19:14.585][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-11 22:19:14.585][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-11 22:19:14.585][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-11 22:19:14.585][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-11 22:19:14.587][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-11 22:19:14.588][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 22:19:14.589][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 22:19:14.590][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-11 22:19:14.592][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 22:19:14.593][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 22:19:14.594][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-11 22:19:14.595][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:14.597][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-11 22:19:14.603][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-11 22:19:14.605][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:14.606][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:14.608][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-11 22:19:14.610][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:14.611][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-11 22:19:14.612][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:14.614][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-11 22:19:14.615][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:14.616][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-11 22:19:14.618][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:14.619][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-11 22:19:14.620][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-11 22:19:14.621][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-11 22:19:14.623][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:14.624][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-11 22:19:14.625][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-11 22:19:14.626][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:14.628][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:14.629][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:14.630][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-11 22:19:14.631][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 22:19:14.633][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 22:19:14.634][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-11 22:19:14.635][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 22:19:14.636][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 22:19:14.638][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-11 22:19:14.639][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:14.641][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-11 22:19:14.642][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-11 22:19:14.643][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:14.645][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:14.646][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-11 22:19:14.648][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:14.650][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-11 22:19:14.651][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:14.652][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-11 22:19:14.654][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:14.655][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-11 22:19:14.656][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:14.658][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-11 22:19:14.659][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-11 22:19:14.660][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-11 22:19:14.662][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:14.663][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-11 22:19:14.664][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-11 22:19:14.665][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:14.667][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:14.668][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:14.669][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-11 22:19:14.670][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 22:19:14.671][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 22:19:14.672][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-11 22:19:14.674][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 22:19:14.675][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 22:19:14.676][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-11 22:19:14.678][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:14.679][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-11 22:19:14.680][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-11 22:19:14.681][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:14.682][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:14.684][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-11 22:19:14.685][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:14.687][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:14.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:14.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:14.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:14.693][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:14.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:14.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:14.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:14.698][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:14.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:14.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:14.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:14.704][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:14.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:14.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:14.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:14.710][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:14.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:14.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:14.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:14.715][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:14.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:14.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:14.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:14.721][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:14.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:14.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:14.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:14.726][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:14.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:14.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:14.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:14.738][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:14.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:14.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:14.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:14.744][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:14.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:14.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:14.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:14.750][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:14.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:14.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:14.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:14.755][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:14.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:14.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:14.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:14.761][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:14.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:14.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:14.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:14.767][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:14.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:14.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:14.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:14.773][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:14.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:14.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:14.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:14.779][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:14.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:14.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:14.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:14.784][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:14.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:14.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:14.788][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:14.790][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-11 22:19:14.792][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-11 22:19:14.794][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-11 22:19:14.795][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-11 22:19:14.797][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-11 22:19:14.799][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-11 22:19:14.800][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-11 22:19:14.802][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-11 22:19:14.804][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-11 22:19:14.805][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-11 22:19:14.807][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-11 22:19:14.809][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-11 22:19:14.811][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-11 22:19:14.812][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-11 22:19:14.814][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-11 22:19:14.815][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-11 22:19:14.817][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-11 22:19:14.819][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-11 22:19:14.820][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-11 22:19:14.822][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-11 22:19:14.824][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-11 22:19:14.825][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-11 22:19:14.827][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-11 22:19:14.829][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-11 22:19:14.831][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-11 22:19:14.832][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-11 22:19:14.834][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-11 22:19:14.836][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-11 22:19:14.837][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-11 22:19:14.839][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-11 22:19:14.841][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-11 22:19:14.842][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-11 22:19:14.844][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-11 22:19:14.846][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-11 22:19:14.847][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-11 22:19:14.849][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-11 22:19:14.851][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-11 22:19:14.852][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-11 22:19:14.860][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-11 22:19:14.862][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-11 22:19:14.864][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-11 22:19:14.865][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-11 22:19:14.867][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-11 22:19:14.869][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-11 22:19:14.870][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-11 22:19:14.872][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-11 22:19:14.874][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-11 22:19:14.875][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-11 22:19:14.877][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-11 22:19:14.879][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-11 22:19:14.880][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-11 22:19:14.882][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-11 22:19:14.884][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-11 22:19:14.885][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-11 22:19:14.887][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-11 22:19:14.889][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-11 22:19:14.890][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-11 22:19:14.892][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-11 22:19:14.894][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-11 22:19:14.896][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-11 22:19:14.897][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-11 22:19:14.899][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-11 22:19:14.901][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-11 22:19:14.903][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-11 22:19:14.904][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-11 22:19:14.906][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-11 22:19:14.908][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-11 22:19:14.910][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-11 22:19:14.911][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-11 22:19:14.913][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-11 22:19:14.915][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-11 22:19:14.916][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-11 22:19:14.918][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-11 22:19:14.920][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-11 22:19:14.922][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-11 22:19:14.923][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-11 22:19:14.925][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-11 22:19:14.927][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-11 22:19:14.928][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-11 22:19:14.930][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-11 22:19:14.932][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-11 22:19:14.933][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-11 22:19:14.935][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-11 22:19:14.937][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-11 22:19:14.939][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-07-11 22:19:14.940][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-11 22:19:14.942][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:14.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:14.944][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:14.947][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:14.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:14.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:14.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:14.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:14.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:14.956][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:14.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:14.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:14.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:14.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:14.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:14.964][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:14.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:14.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:14.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:14.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:14.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:14.973][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:14.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:14.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:14.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:14.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:14.980][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:14.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:14.989][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:14.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:14.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:14.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:14.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:15.000][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:15.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:15.004][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:15.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:15.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:15.008][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:15.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:15.011][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:15.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:15.014][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:15.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:15.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:15.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:15.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:15.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:15.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:15.025][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:15.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:15.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:15.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:15.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:15.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:15.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:15.035][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:15.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:15.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:15.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:15.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:15.042][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:15.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:15.046][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:15.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:15.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:15.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:15.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:15.053][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:15.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:15.056][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:15.057][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:15.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:15.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:15.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:15.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:15.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:15.066][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:15.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:15.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:15.071][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:15.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:15.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:15.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:15.077][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:15.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:15.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:15.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:15.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:15.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:15.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:15.087][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:15.089][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:15.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:15.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:15.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:15.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:15.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:15.098][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:15.099][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:15.100][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:15.102][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:15.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:15.105][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:15.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:15.108][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:15.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:15.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:15.112][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:15.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:15.115][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:15.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:15.118][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 22:19:15.120][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:15.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:15.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:15.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:15.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:15.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:15.131][biodb$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-07-11 22:19:15.134][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-07-11 22:19:15.136][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:15.138][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-11 22:19:15.140][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:15.141][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-11 22:19:15.143][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:15.145][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-07-11 22:19:15.146][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:15.148][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-11 22:19:15.150][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-11 22:19:15.151][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-11 22:19:15.153][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:15.162][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-07-11 22:19:15.164][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-11 22:19:15.166][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-07-11 22:19:15.166][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-07-11 22:19:15.166][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-07-11 22:19:15.166][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-07-11 22:19:15.166][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-07-11 22:19:15.166][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-07-11 22:19:15.166][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-07-11 22:19:15.166][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-07-11 22:19:15.166][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-07-11 22:19:15.166][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-07-11 22:19:15.166][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-07-11 22:19:15.166][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-07-11 22:19:15.166][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-07-11 22:19:15.166][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-07-11 22:19:15.166][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-07-11 22:19:15.166][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-07-11 22:19:15.166][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-07-11 22:19:15.166][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-07-11 22:19:15.168][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-11 22:19:15.170][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-11 22:19:15.170][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-07-11 22:19:15.170][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-07-11 22:19:15.171][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-11 22:19:15.173][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 22:19:15.175][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 22:19:15.176][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-11 22:19:15.178][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 22:19:15.179][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 22:19:15.181][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-11 22:19:15.183][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-07-11 22:19:15.183][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-07-11 22:19:15.184][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-11 22:19:15.186][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-11 22:19:15.188][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-11 22:19:15.189][self$setPropertyValue]
biodb.DEBUG[2024-07-11 22:19:15.191][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-07-11 22:19:15.194][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-11 22:19:15.196][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-11 22:19:15.199][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-11 22:19:15.201][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-11 22:19:15.206][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-07-11 22:19:15.207][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-07-11 22:19:15.209][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-07-11 22:19:15.212][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-11 22:19:15.214][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-11 22:19:15.215][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-11 22:19:15.217][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-07-11 22:19:15.219][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-07-11 22:19:15.221][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-07-11 22:19:15.221][self$setPropertyValue] Setting property "urls" to "E:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-07-11 22:19:15.222][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-11 22:19:15.224][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-11 22:19:15.225][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-07-11 22:19:15.227][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-07-11 22:19:15.229][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-07-11 22:19:15.231][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-11 22:19:15.233][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-11 22:19:15.235][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-11 22:19:15.237][private$addConnectorRules] Create new rule for URL "E:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-11 22:19:15.239][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-11 22:19:15.241][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-07-11 22:19:15.244][biodb::testThat]
biodb.INFO [2024-07-11 22:19:15.246][biodb::testThat] Running test function test.searchMultipleWordsInDescription (" We can search for multiple words inside description field. ").
biodb.INFO [2024-07-11 22:19:15.248][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-11 22:19:15.249][biodb::testThat]
biodb.DEBUG[2024-07-11 22:19:15.254][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-07-11 22:19:15.255][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-07-11 22:19:15.257][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-07-11 22:19:15.263][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 22:19:15.265][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 22:19:15.267][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-11 22:19:15.270][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 22:19:15.271][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-11 22:19:15.274][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-11 22:19:15.275][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-11 22:19:15.277][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-11 22:19:15.279][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-11 22:19:15.281][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-11 22:19:15.282][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2024-07-11 22:19:15.285][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-07-11 22:19:15.287][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-07-11 22:19:15.290][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 22:19:15.292][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-07-11 22:19:15.295][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-07-11 22:19:15.297][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-11 22:19:15.302][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-07-11 22:19:15.303][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-07-11 22:19:15.305][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-11 22:19:15.307][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-11 22:19:15.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-11 22:19:15.311][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:15.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:15.348][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:15.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:15.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:15.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-11 22:19:15.359][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:15.361][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:15.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.364][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:15.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:15.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.381][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:15.383][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:15.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.386][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.387][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:15.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:15.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.394][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 22:19:15.396][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 22:19:15.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.399][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.402][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 22:19:15.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 22:19:15.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.408][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 22:19:15.410][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 22:19:15.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.414][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.417][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 22:19:15.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 22:19:15.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.423][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 22:19:15.424][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 22:19:15.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.428][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 22:19:15.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 22:19:15.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.439][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:15.441][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:15.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.445][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:15.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:15.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.456][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:15.458][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:15.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.462][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.464][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:15.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:15.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.472][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:15.474][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:15.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.478][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.480][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:15.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:15.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.489][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:15.491][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:15.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.495][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.497][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:15.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:15.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.503][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:15.505][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:15.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.509][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:15.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:15.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.518][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 22:19:15.520][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 22:19:15.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.523][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.525][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 22:19:15.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 22:19:15.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.532][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 22:19:15.534][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 22:19:15.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.537][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.539][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 22:19:15.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 22:19:15.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.546][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:15.547][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:15.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.563][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.565][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:15.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:15.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.573][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:15.575][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:15.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.578][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:15.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:15.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.587][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:15.589][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:15.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.592][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.594][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:15.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:15.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.601][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:15.603][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:15.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.606][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.608][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:15.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:15.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.614][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 22:19:15.616][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 22:19:15.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.619][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.621][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 22:19:15.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 22:19:15.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.628][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-07-11 22:19:15.630][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:15.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.634][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.636][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-07-11 22:19:15.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:15.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:15.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:15.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:15.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:15.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:15.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:15.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.663][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 22:19:15.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 22:19:15.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.670][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 22:19:15.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 22:19:15.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.677][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 22:19:15.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 22:19:15.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.708][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 22:19:15.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 22:19:15.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.715][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 22:19:15.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 22:19:15.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.721][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 22:19:15.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 22:19:15.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 22:19:15.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 22:19:15.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 22:19:15.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 22:19:15.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 22:19:15.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 22:19:15.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:15.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:15.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:15.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:15.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:15.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:15.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.778][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:15.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:15.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.785][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:15.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:15.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.791][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:15.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:15.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:15.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:15.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.805][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:15.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:15.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.811][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:15.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:15.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.818][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:15.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:15.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.825][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:15.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:15.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:15.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:15.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.838][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:15.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:15.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.844][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:15.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:15.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.851][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:15.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:15.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.858][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 22:19:15.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 22:19:15.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.864][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 22:19:15.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 22:19:15.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.871][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 22:19:15.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 22:19:15.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.877][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 22:19:15.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 22:19:15.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.884][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 22:19:15.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 22:19:15.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.890][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 22:19:15.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 22:19:15.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:15.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:15.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.903][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:15.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:15.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:15.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:15.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.917][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:15.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:15.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.923][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:15.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:15.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.930][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:15.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:15.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:15.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:15.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:15.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:15.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:15.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:15.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.965][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:15.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:15.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.972][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:15.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:15.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.978][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:15.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:15.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.985][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:15.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:15.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.992][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:15.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:15.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:15.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:15.998][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:16.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:16.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.005][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:16.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:16.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.012][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:16.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:16.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.018][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:16.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:16.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.025][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 22:19:16.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 22:19:16.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.031][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 22:19:16.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 22:19:16.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.038][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 22:19:16.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 22:19:16.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.045][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-11 22:19:16.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:16.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.051][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:16.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:16.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.058][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:16.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:16.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:16.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:16.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.071][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-11 22:19:16.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:16.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.079][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:16.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:16.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.086][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:16.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:16.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.092][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:16.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:16.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.099][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:16.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:16.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.105][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:16.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:16.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.112][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:16.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:16.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.127][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:16.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:16.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:16.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:16.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.141][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:16.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:16.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:16.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:16.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:16.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:16.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:16.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:16.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:16.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:16.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:16.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:16.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:16.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:16.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 22:19:16.188][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-07-11 22:19:16.189][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:16.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:16.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.196][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:16.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:16.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.203][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:16.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:16.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.209][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:16.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:16.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 22:19:16.216][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-11 22:19:16.218][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-11 22:19:16.219][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-11 22:19:16.221][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:16.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:16.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:16.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:16.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:16.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:16.384][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-07-11 22:19:16.386][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-07-11 22:19:16.389][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 22:19:16.392][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-07-11 22:19:16.396][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-07-11 22:19:16.399][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-11 22:19:16.403][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-07-11 22:19:16.405][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-07-11 22:19:16.407][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-11 22:19:16.409][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-11 22:19:16.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-11 22:19:16.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:16.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:16.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:16.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:16.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:16.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-11 22:19:16.697][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:16.699][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:16.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.702][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:16.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:16.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.711][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:16.713][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:16.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.726][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.729][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:16.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:16.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.738][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 22:19:16.740][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 22:19:16.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.743][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.746][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 22:19:16.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 22:19:16.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.754][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 22:19:16.756][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 22:19:16.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.760][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.763][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 22:19:16.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 22:19:16.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.771][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 22:19:16.773][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 22:19:16.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.777][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 22:19:16.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 22:19:16.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.788][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:16.790][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:16.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.794][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:16.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:16.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.805][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:16.807][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:16.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.811][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.813][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:16.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:16.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.821][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:16.823][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:16.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.827][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.829][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:16.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:16.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.838][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:16.840][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:16.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.844][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.846][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:16.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:16.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.855][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:16.857][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:16.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.861][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.864][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:16.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:16.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.872][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 22:19:16.874][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 22:19:16.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.878][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.880][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 22:19:16.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 22:19:16.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.887][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 22:19:16.889][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 22:19:16.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.893][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.895][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 22:19:16.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 22:19:16.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.902][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:16.903][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:16.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.907][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.909][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:16.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:16.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.920][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:16.921][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:16.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.925][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.928][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:16.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:16.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.943][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:16.945][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:16.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.948][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.950][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:16.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:16.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.957][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:16.959][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:16.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.962][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.964][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:16.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:16.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.971][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 22:19:16.973][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 22:19:16.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.976][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.978][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 22:19:16.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 22:19:16.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.985][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-07-11 22:19:16.987][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:16.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.990][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.992][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-07-11 22:19:16.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:16.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:16.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:16.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:17.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:17.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:17.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:17.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:17.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:17.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.019][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 22:19:17.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 22:19:17.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.026][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 22:19:17.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 22:19:17.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.033][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 22:19:17.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 22:19:17.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.040][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 22:19:17.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 22:19:17.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.046][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 22:19:17.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 22:19:17.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.053][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 22:19:17.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 22:19:17.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 22:19:17.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 22:19:17.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.066][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 22:19:17.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 22:19:17.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 22:19:17.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 22:19:17.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:17.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:17.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:17.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:17.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:17.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 22:19:17.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:17.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:17.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.116][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:17.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:17.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.131][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:17.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 22:19:17.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:17.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:17.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.145][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:17.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:17.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.153][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:17.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 22:19:17.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:17.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:17.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.172][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:17.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:17.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:17.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 22:19:17.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.185][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:17.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:17.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.192][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:17.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:17.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.199][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:17.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:17.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.205][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 22:19:17.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 22:19:17.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.213][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 22:19:17.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 22:19:17.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.222][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 22:19:17.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 22:19:17.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.230][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 22:19:17.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 22:19:17.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.239][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 22:19:17.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 22:19:17.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.246][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 22:19:17.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 22:19:17.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.254][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:17.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:17.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.262][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:17.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:17.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.269][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:17.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:17.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.276][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:17.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:17.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.283][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:17.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:17.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.289][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:17.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 22:19:17.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.296][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:17.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:17.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:17.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:17.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:17.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 22:19:17.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.325][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:17.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:17.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.332][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:17.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:17.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.339][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:17.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:17.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.346][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:17.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:17.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.353][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:17.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:17.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.359][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:17.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 22:19:17.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.366][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:17.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:17.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.373][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:17.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:17.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.380][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:17.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 22:19:17.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.386][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 22:19:17.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 22:19:17.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.393][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 22:19:17.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 22:19:17.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.400][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 22:19:17.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 22:19:17.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.406][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-11 22:19:17.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:17.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.413][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:17.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:17.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.420][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:17.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:17.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.426][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 22:19:17.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:17.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.433][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-11 22:19:17.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 22:19:17.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.441][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:17.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:17.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.448][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:17.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:17.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.454][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:17.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:17.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.461][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:17.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:17.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.467][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 22:19:17.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 22:19:17.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.474][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:17.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:17.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.481][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:17.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:17.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:17.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:17.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.502][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:17.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 22:19:17.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:17.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:17.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:17.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:17.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:17.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:17.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:17.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:17.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:17.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:17.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 22:19:17.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 22:19:17.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 22:19:17.553][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-07-11 22:19:17.555][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:17.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:17.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.564][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:17.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:17.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.572][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:17.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:17.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.580][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:17.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:17.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 22:19:17.588][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-11 22:19:17.590][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2024-07-11 22:19:17.593][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-11 22:19:17.594][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:17.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:17.608][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:17.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:17.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:17.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:17.622][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-07-11 22:19:17.624][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-07-11 22:19:17.626][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-07-11 22:19:17.628][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 22:19:17.630][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 22:19:17.632][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-11 22:19:17.634][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 22:19:17.636][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-11 22:19:17.638][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-11 22:19:17.640][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-11 22:19:17.642][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-11 22:19:17.643][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-11 22:19:17.646][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-11 22:19:17.647][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-07-11 22:19:17.650][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:17.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:17.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.656][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:17.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:17.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.662][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:17.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:17.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.667][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:17.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:17.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.672][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:17.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:17.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.677][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:17.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:17.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.695][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:17.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:17.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 22:19:17.704][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-11 22:19:17.705][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-11 22:19:17.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-11 22:19:17.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:17.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:17.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:17.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:17.743][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:17.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-11 22:19:17.747][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:17.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:17.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.753][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:17.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:17.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.760][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:17.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:17.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.767][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:17.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:17.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.773][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:17.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:17.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.780][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:17.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:17.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.787][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:17.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:17.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 22:19:17.793][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-07-11 22:19:17.795][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-11 22:19:17.797][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-11 22:19:17.798][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:17.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:17.813][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:17.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:17.816][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:17.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 22:19:17.823][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-07-11 22:19:17.824][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-07-11 22:19:17.826][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-07-11 22:19:17.828][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 22:19:17.830][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 22:19:17.832][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-11 22:19:17.834][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 22:19:17.835][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-11 22:19:17.837][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-11 22:19:17.838][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-11 22:19:17.839][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-11 22:19:17.841][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-11 22:19:17.842][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-11 22:19:17.843][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-07-11 22:19:17.845][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:17.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:17.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.851][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:17.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:17.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.858][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:17.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:17.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.864][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:17.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:17.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.871][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:17.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:17.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.877][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:17.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:17.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.892][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:17.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:17.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 22:19:17.900][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-07-11 22:19:17.901][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2024-07-11 22:19:17.903][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-11 22:19:17.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:17.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:17.916][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:17.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:17.919][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:17.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-11 22:19:17.923][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:17.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:17.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.929][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:17.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:17.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.936][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:17.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:17.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.943][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:17.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:17.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.950][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:17.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:17.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.957][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:17.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:17.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 22:19:17.964][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 22:19:17.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 22:19:17.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 22:19:17.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 22:19:17.971][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-11 22:19:17.973][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-11 22:19:17.975][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-11 22:19:17.976][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:17.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:17.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:17.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:17.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:17.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-11 22:19:18.004][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-11 22:19:18.006][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-07-11 22:19:18.008][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-07-11 22:19:18.009][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-11 22:19:18.010][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 22:19:18.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 22:19:18.012][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 22:19:18.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 22:19:18.015][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 22:19:18.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
>
> proc.time()
user system elapsed
12.17 0.64 18.40