Pierrick Roger
| Snapshot Date: 2024-12-30 13:00 -0500 (Mon, 30 Dec 2024) |
| git_url: https://git.bioconductor.org/packages/biodbChebi |
| git_branch: RELEASE_3_20 |
| git_last_commit: e6b963e |
| git_last_commit_date: 2024-10-29 11:04:35 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-01-02 12:04 -0500 (Thu, 02 Jan 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4467 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 202/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodbChebi 1.12.0 (landing page) Pierrick Roger
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the biodbChebi package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbChebi.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbChebi |
| Version: 1.12.0 |
| Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbChebi.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings biodbChebi_1.12.0.tar.gz |
| StartedAt: 2024-12-30 23:15:34 -0500 (Mon, 30 Dec 2024) |
| EndedAt: 2024-12-30 23:19:25 -0500 (Mon, 30 Dec 2024) |
| EllapsedTime: 231.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: biodbChebi.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbChebi.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings biodbChebi_1.12.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'F:/biocbuild/bbs-3.20-bioc/meat/biodbChebi.Rcheck'
* using R version 4.4.2 (2024-10-31 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.3.0
GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'biodbChebi/DESCRIPTION' ... OK
* this is package 'biodbChebi' version '1.12.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbChebi' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ChebiConn 4.36 2.22 88.71
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
biodbChebi.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL biodbChebi ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library' * installing *source* package 'biodbChebi' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (biodbChebi)
biodbChebi.Rcheck/tests/testthat.Rout
R version 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2024-12-30 23:18:10.459][biodb::testContext]
biodb.INFO [2024-12-30 23:18:10.464][biodb::testContext] ********************************************************************************
biodb.INFO [2024-12-30 23:18:10.466][biodb::testContext] Test context - Generic tests
biodb.INFO [2024-12-30 23:18:10.606][biodb::testContext] ********************************************************************************
biodb.INFO [2024-12-30 23:18:10.608][biodb::testContext]
biodb.INFO [2024-12-30 23:18:10.620][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-12-30 23:18:10.625][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-12-30 23:18:10.640][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-30 23:18:10.643][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-12-30 23:18:10.646][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-12-30 23:18:10.648][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:10.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:10.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:10.654][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-12-30 23:18:10.708][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-12-30 23:18:10.710][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:10.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:10.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:10.716][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-12-30 23:18:10.718][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-12-30 23:18:10.719][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:10.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:10.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:10.725][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-12-30 23:18:10.727][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-12-30 23:18:10.729][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-12-30 23:18:10.731][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:10.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:10.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:10.736][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-12-30 23:18:10.738][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-12-30 23:18:10.740][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-12-30 23:18:10.741][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:10.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:10.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:10.747][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-12-30 23:18:10.749][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-12-30 23:18:10.750][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:10.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:10.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:10.756][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-12-30 23:18:10.758][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-12-30 23:18:10.760][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-12-30 23:18:10.762][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:10.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:10.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:10.767][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-12-30 23:18:10.770][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-12-30 23:18:10.771][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:10.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:10.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:10.777][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-12-30 23:18:10.779][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-12-30 23:18:10.781][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-12-30 23:18:10.783][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:10.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:10.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:10.788][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-12-30 23:18:10.790][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-12-30 23:18:10.792][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-12-30 23:18:10.794][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-12-30 23:18:10.796][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-12-30 23:18:10.798][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-12-30 23:18:10.800][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:10.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:10.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:10.805][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-12-30 23:18:10.807][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-12-30 23:18:10.809][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:10.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:10.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:10.814][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-12-30 23:18:10.816][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-12-30 23:18:10.818][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:10.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:10.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:10.824][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-12-30 23:18:10.826][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-12-30 23:18:10.828][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:10.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:10.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:10.834][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-12-30 23:18:10.836][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-12-30 23:18:10.838][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:10.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:10.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:10.843][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-12-30 23:18:10.845][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-12-30 23:18:10.847][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:10.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:10.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:10.852][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-12-30 23:18:10.854][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-12-30 23:18:10.859][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-12-30 23:18:10.861][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:10.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:10.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:10.867][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-12-30 23:18:10.868][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-12-30 23:18:10.871][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-12-30 23:18:10.872][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:10.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:10.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:10.881][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-12-30 23:18:10.931][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-30 23:18:10.957][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-12-30 23:18:10.960][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:10.962][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-30 23:18:10.964][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:10.966][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-30 23:18:10.968][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-30 23:18:10.970][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-30 23:18:10.972][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-12-30 23:18:10.973][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-30 23:18:10.975][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:10.977][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-12-30 23:18:10.979][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-30 23:18:10.981][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:18:10.983][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:10.985][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-30 23:18:10.985][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-30 23:18:10.985][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-30 23:18:10.985][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-12-30 23:18:10.985][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-12-30 23:18:10.987][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-30 23:18:10.989][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-30 23:18:10.990][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-30 23:18:10.992][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-30 23:18:10.994][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-30 23:18:10.996][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-30 23:18:10.997][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-30 23:18:10.999][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:18:11.001][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-30 23:18:11.003][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-30 23:18:11.005][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-30 23:18:11.007][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:18:11.018][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-12-30 23:18:11.022][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-30 23:18:11.024][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-12-30 23:18:11.027][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:11.029][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-30 23:18:11.031][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:11.033][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-30 23:18:11.035][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-30 23:18:11.037][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-30 23:18:11.039][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-12-30 23:18:11.041][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-30 23:18:11.043][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:11.045][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-12-30 23:18:11.047][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-30 23:18:11.049][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:18:11.051][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:11.054][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-30 23:18:11.054][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-30 23:18:11.054][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-30 23:18:11.054][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-12-30 23:18:11.054][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-12-30 23:18:11.056][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-30 23:18:11.058][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-30 23:18:11.059][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-30 23:18:11.061][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-30 23:18:11.063][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-30 23:18:11.065][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-30 23:18:11.067][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-30 23:18:11.069][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:18:11.071][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-30 23:18:11.073][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-30 23:18:11.075][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-30 23:18:11.077][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:18:11.079][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-12-30 23:18:11.082][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:11.084][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-12-30 23:18:11.086][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:11.091][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-30 23:18:11.093][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:11.095][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-30 23:18:11.097][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-30 23:18:11.099][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-30 23:18:11.101][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-12-30 23:18:11.103][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-30 23:18:11.105][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-12-30 23:18:11.107][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-12-30 23:18:11.109][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-30 23:18:11.111][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:18:11.113][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:11.115][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:18:11.117][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-30 23:18:11.119][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-30 23:18:11.121][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-30 23:18:11.123][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-30 23:18:11.124][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-30 23:18:11.126][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-30 23:18:11.128][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-30 23:18:11.130][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:18:11.132][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-30 23:18:11.134][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-30 23:18:11.136][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-30 23:18:11.138][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:18:11.140][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-12-30 23:18:11.143][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:11.146][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-12-30 23:18:11.147][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:11.150][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-30 23:18:11.152][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:11.154][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-30 23:18:11.156][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-30 23:18:11.158][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-30 23:18:11.160][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-12-30 23:18:11.162][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-30 23:18:11.164][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-12-30 23:18:11.166][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-12-30 23:18:11.168][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-30 23:18:11.170][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:18:11.172][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:11.174][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:18:11.176][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-30 23:18:11.178][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-30 23:18:11.180][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-30 23:18:11.181][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-30 23:18:11.183][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-30 23:18:11.185][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-30 23:18:11.187][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-30 23:18:11.189][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:18:11.191][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-30 23:18:11.193][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-30 23:18:11.195][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-30 23:18:11.197][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:18:11.203][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-30 23:18:11.205][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:11.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:11.208][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:11.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:11.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:11.214][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:11.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:11.218][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:11.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:11.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:11.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:11.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:11.227][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:11.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:11.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:11.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:11.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:11.236][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:11.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:11.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:11.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:11.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:11.245][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:11.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:11.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:11.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:11.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:11.254][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:11.256][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:11.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:11.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:11.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:11.263][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:11.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:11.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:11.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:11.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:11.272][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:11.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:11.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:11.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:11.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:11.281][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:11.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:11.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:11.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:11.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:11.290][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:11.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:11.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:11.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:11.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:11.299][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:11.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:11.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:11.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:11.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:11.308][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:11.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:11.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:11.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:11.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:11.317][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:11.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:11.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:11.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:11.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:11.326][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:11.328][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:11.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:11.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:11.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:11.335][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:11.337][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:11.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:11.340][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:11.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:11.344][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:11.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:11.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:11.350][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:11.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:11.353][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:11.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:11.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:11.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:11.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:11.363][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-12-30 23:18:11.370][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-12-30 23:18:11.373][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-12-30 23:18:11.376][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-12-30 23:18:11.388][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-12-30 23:18:11.391][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-12-30 23:18:11.397][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-12-30 23:18:11.400][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-12-30 23:18:11.402][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-12-30 23:18:11.405][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-12-30 23:18:11.408][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-12-30 23:18:11.416][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-12-30 23:18:11.419][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-12-30 23:18:11.422][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-12-30 23:18:11.425][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-12-30 23:18:11.427][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-12-30 23:18:11.430][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-12-30 23:18:11.433][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-12-30 23:18:11.436][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-12-30 23:18:11.439][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-12-30 23:18:11.441][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-12-30 23:18:11.444][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-12-30 23:18:11.447][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-12-30 23:18:11.449][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-12-30 23:18:11.452][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-12-30 23:18:11.454][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-12-30 23:18:11.457][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-12-30 23:18:11.459][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-12-30 23:18:11.462][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-12-30 23:18:11.465][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-12-30 23:18:11.467][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-12-30 23:18:11.470][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-12-30 23:18:11.473][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-12-30 23:18:11.477][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-12-30 23:18:11.481][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-12-30 23:18:11.485][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-12-30 23:18:11.488][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-12-30 23:18:11.491][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-12-30 23:18:11.494][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-12-30 23:18:11.497][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-12-30 23:18:11.501][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-12-30 23:18:11.505][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-12-30 23:18:11.508][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-12-30 23:18:11.511][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-12-30 23:18:11.514][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-12-30 23:18:11.519][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-12-30 23:18:11.523][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-12-30 23:18:11.526][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-12-30 23:18:11.529][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-12-30 23:18:11.531][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-12-30 23:18:11.534][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-12-30 23:18:11.537][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-12-30 23:18:11.544][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-12-30 23:18:11.547][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-12-30 23:18:11.550][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-12-30 23:18:11.553][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-12-30 23:18:11.555][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-12-30 23:18:11.558][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-12-30 23:18:11.560][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-12-30 23:18:11.563][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-12-30 23:18:11.565][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-12-30 23:18:11.568][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-12-30 23:18:11.570][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-12-30 23:18:11.573][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-12-30 23:18:11.576][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-12-30 23:18:11.578][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-12-30 23:18:11.580][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-12-30 23:18:11.583][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-12-30 23:18:11.586][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-12-30 23:18:11.589][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-12-30 23:18:11.592][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-12-30 23:18:11.595][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-12-30 23:18:11.598][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-12-30 23:18:11.600][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-12-30 23:18:11.603][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-12-30 23:18:11.606][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-12-30 23:18:11.608][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-12-30 23:18:11.611][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-12-30 23:18:11.614][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-12-30 23:18:11.616][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-12-30 23:18:11.619][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-12-30 23:18:11.621][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-12-30 23:18:11.624][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-12-30 23:18:11.687][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-12-30 23:18:11.695][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2024-12-30 23:18:11.700][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-30 23:18:11.703][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:11.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:11.714][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:11.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:11.724][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:11.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:11.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:11.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:11.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:11.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:11.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:11.741][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:11.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:11.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:11.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:11.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:11.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:11.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:11.754][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:11.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:11.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:11.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:11.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:11.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:11.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:11.766][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:11.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:11.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:11.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:11.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:11.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:11.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:11.780][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:11.781][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:11.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:11.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:11.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:11.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:11.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:11.795][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:11.797][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:11.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:11.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:11.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:11.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:11.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:11.811][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:11.813][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:11.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:11.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:11.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:11.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:11.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:11.836][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:11.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:11.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:11.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:11.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:11.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:11.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:11.848][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:11.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:11.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:11.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:11.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:11.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:11.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:11.861][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:11.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:11.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:11.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:11.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:11.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:11.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:11.874][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:11.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:11.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:11.880][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:11.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:11.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:11.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:11.887][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:11.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:11.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:11.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:11.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:11.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:11.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:11.900][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:11.902][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:11.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:11.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:11.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:11.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:11.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:11.915][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:11.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:11.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:11.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:11.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:11.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:11.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:11.928][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:11.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:11.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:11.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:11.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:11.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:11.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:11.948][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:11.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:11.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:11.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:11.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:11.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:11.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:11.961][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:11.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:11.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:11.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:11.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:11.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:11.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:11.975][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-12-30 23:18:11.991][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-12-30 23:18:11.995][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-30 23:18:11.997][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-12-30 23:18:12.000][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:12.002][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-30 23:18:12.004][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:12.006][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-30 23:18:12.011][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:12.013][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-12-30 23:18:12.016][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-12-30 23:18:12.018][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-30 23:18:12.020][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:12.022][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-12-30 23:18:12.024][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-30 23:18:12.026][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-12-30 23:18:12.026][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-12-30 23:18:12.026][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-12-30 23:18:12.026][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-12-30 23:18:12.026][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-12-30 23:18:12.026][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-12-30 23:18:12.026][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-12-30 23:18:12.026][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-12-30 23:18:12.026][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-12-30 23:18:12.026][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-12-30 23:18:12.026][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-12-30 23:18:12.029][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-30 23:18:12.031][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-30 23:18:12.031][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-30 23:18:12.031][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-30 23:18:12.033][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-12-30 23:18:12.035][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-30 23:18:12.041][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-30 23:18:12.043][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-30 23:18:12.045][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-30 23:18:12.047][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-30 23:18:12.049][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-30 23:18:12.051][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-30 23:18:12.051][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-12-30 23:18:12.053][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-30 23:18:12.055][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-30 23:18:12.057][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:12.059][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-12-30 23:18:12.059][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-12-30 23:18:12.074][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-12-30 23:18:12.078][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-12-30 23:18:12.081][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-12-30 23:18:12.084][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-12-30 23:18:12.092][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-12-30 23:18:12.095][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-12-30 23:18:12.133][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-12-30 23:18:12.135][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-12-30 23:18:12.142][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-12-30 23:18:12.149][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-12-30 23:18:12.157][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-30 23:18:12.159][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-30 23:18:12.162][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-12-30 23:18:12.164][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-12-30 23:18:12.181][biodb::testThat]
biodb.INFO [2024-12-30 23:18:12.184][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2024-12-30 23:18:12.186][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-30 23:18:12.188][biodb::testThat]
biodb.TRACE[2024-12-30 23:18:12.344][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc/R/library/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2024-12-30 23:18:12.347][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-30 23:18:12.352][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-30 23:18:12.373][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:12.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:12.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:12.401][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:12.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:12.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:12.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:12.417][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:12.418][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:12.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.422][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:12.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:12.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:12.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:12.445][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:12.447][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:12.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.450][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:12.482][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:12.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:12.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:12.489][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:12.491][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:12.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.494][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:12.496][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:12.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:12.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:12.502][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:12.504][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:12.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.507][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:12.509][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:12.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:12.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:12.515][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:12.517][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:12.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.520][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:12.522][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:12.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:12.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:12.528][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:12.530][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:12.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.533][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:12.535][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:12.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:12.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:12.544][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:12.546][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:12.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.550][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:12.553][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:12.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:12.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:12.561][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:12.563][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:12.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.567][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:12.570][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:12.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:12.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:12.578][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:12.581][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:12.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.585][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:12.588][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:12.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:12.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:12.596][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:12.598][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:12.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.602][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:12.605][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:12.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:12.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:12.667][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:12.670][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:12.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.674][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:12.676][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:12.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:12.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:12.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:12.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:12.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:12.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:12.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:12.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:12.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:12.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:12.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:12.708][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:12.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:12.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:12.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:12.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:12.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:12.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:12.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:12.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:12.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:12.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:12.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:12.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:12.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:12.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:12.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:12.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:12.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:12.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:12.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:12.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:12.795][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2024-12-30 23:18:12.799][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:12.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:12.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:12.806][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:12.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:12.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:12.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:12.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:12.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:12.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:12.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:12.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:12.853][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:12.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:12.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:12.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:12.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:12.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:12.876][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-30 23:18:12.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-30 23:18:12.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:12.882][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-30 23:18:12.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-30 23:18:12.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:12.888][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-30 23:18:12.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-30 23:18:12.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:12.895][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-30 23:18:12.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-30 23:18:12.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:12.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:14.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:14.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:14.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:14.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:14.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:14.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:14.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:14.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:14.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:14.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:14.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:14.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:14.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:14.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:14.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:14.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:15.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:15.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:15.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:15.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:15.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:15.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:15.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:15.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:15.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:15.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:15.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:15.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:15.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:15.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:15.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:15.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:15.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:15.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:15.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:15.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:15.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:15.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:15.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:15.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:15.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:15.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:15.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:15.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:15.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:15.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:15.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:15.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:15.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:15.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:15.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:15.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:15.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:15.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:15.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:15.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:15.940][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:15.942][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:16.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:16.645][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:16.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:16.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:16.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:16.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:17.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:17.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:17.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:17.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:17.066][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:17.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:17.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:17.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:17.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:17.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:17.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:17.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:17.632][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:17.634][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:17.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:17.637][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:17.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:17.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:17.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:17.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:18.702][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:18.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:18.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:18.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:18.710][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:18.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:18.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:18.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:18.718][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:18.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:18.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:18.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:18.726][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:18.728][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:18.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:18.731][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:18.733][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:18.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:18.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:18.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:19.134][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:19.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:19.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:19.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:19.142][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:19.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:19.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:19.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:19.354][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:19.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:19.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:19.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:19.360][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:19.362][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:19.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:19.366][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:19.368][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:19.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:19.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:19.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:19.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:19.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:19.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:19.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:19.562][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:19.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:19.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:19.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:19.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:19.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:19.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:19.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:19.574][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:19.576][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:19.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:19.579][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:19.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:19.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:19.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:19.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:19.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:19.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:19.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:19.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:19.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:19.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:19.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:19.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:19.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:19.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:19.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:19.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:19.639][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:19.641][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:19.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:19.645][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:19.647][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:19.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:19.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:19.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:19.675][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:19.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:19.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:19.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:19.683][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:19.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:19.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:19.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:19.692][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:19.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:19.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:19.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:19.700][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:19.702][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:19.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:19.714][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:19.716][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:19.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:19.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:19.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:19.940][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-30 23:18:19.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:20.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:20.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:20.045][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-30 23:18:20.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:20.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:20.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:20.053][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-30 23:18:20.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:20.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:20.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:20.061][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-30 23:18:20.063][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:20.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:20.067][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:20.069][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-30 23:18:20.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:20.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:20.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:20.092][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:20.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:20.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:20.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:20.101][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:20.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:20.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:20.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:20.109][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:20.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:20.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:20.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:20.116][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:20.118][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:20.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:20.122][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:20.124][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:20.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:20.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:20.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:20.248][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:20.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:20.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:20.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:20.259][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:20.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:20.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:20.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:20.271][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:20.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:20.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:20.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:20.279][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:20.281][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:20.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:20.285][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:20.287][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:20.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:20.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:20.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:20.312][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:20.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:20.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:20.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:20.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:20.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:20.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:20.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:20.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:20.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:20.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:20.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:20.353][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:20.355][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:20.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:20.363][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:20.365][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:20.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:20.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:20.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:20.514][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:20.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:20.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:20.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:20.523][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:20.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:20.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:20.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:20.531][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:20.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:20.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:20.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:20.539][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:20.542][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:20.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:20.545][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:20.547][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:20.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:20.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:20.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:20.651][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:20.653][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:20.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:20.657][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:20.674][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:20.676][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:20.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:20.681][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:20.794][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:20.797][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:20.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:20.801][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:20.934][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:20.938][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:20.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:20.948][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:20.975][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:21.088][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:21.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:21.093][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:21.112][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:21.115][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:21.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:21.119][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:21.219][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:21.223][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:21.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:21.228][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:21.344][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:21.347][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:21.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:21.351][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:21.374][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-30 23:18:21.377][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:21.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:21.381][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:21.511][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:21.513][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:21.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:21.518][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:21.531][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:21.534][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:21.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:21.538][ef$get] fields variable is a list.
biodb.INFO [2024-12-30 23:18:21.692][biodb::testThat]
biodb.INFO [2024-12-30 23:18:21.695][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-12-30 23:18:21.710][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-30 23:18:21.717][biodb::testThat]
biodb.DEBUG[2024-12-30 23:18:21.754][private$loadEntries] Creating entries from ids [1]: "15440".
biodb.DEBUG[2024-12-30 23:18:21.764][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-30 23:18:21.774][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15440".
biodb.TRACE[2024-12-30 23:18:21.777][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:21.781][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml".
biodb.DEBUG[2024-12-30 23:18:21.783][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-30 23:18:21.832][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-30 23:18:21.836][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-30 23:18:21.840][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:21.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:21.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:21.928][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:21.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:22.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:22.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:22.045][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:22.052][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:22.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:22.063][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:22.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:22.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:22.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:22.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:22.108][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:22.110][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:22.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:22.114][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:22.117][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:22.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:22.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:22.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:22.126][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:22.128][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:22.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:22.132][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:22.135][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:22.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:22.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:22.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:22.153][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:22.159][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:22.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:22.163][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:22.170][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:22.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:22.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:22.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:22.179][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:22.181][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:22.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:22.185][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:22.187][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:22.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:22.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:22.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:22.195][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:22.197][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:22.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:22.201][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:22.204][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:22.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:22.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:22.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:22.212][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:22.214][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:22.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:22.218][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:22.221][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:22.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:22.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:22.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:22.238][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:22.240][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:22.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:22.244][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:22.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:22.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:22.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:22.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:22.255][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:22.257][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:22.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:22.261][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:22.264][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:22.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:22.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:22.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:22.273][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:22.275][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:22.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:22.282][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:22.285][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:22.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:22.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:22.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:22.296][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:22.299][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:22.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:22.312][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:22.316][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:22.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:22.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:22.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:22.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:22.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:22.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:22.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:22.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:22.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:22.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:22.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:22.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:22.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:22.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:22.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:22.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:22.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:22.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:22.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:22.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:22.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:22.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:22.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:22.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:22.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:22.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:22.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:22.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:22.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:22.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:22.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:22.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:22.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:22.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:22.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:22.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:22.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:22.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:22.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:22.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:22.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:22.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:22.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:22.531][self$createEntryFromContent] Accession numbers: 15440.
biodb.TRACE[2024-12-30 23:18:22.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-12-30 23:18:22.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-12-30 23:18:22.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:22.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:22.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-12-30 23:18:22.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-12-30 23:18:22.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:22.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:22.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-12-30 23:18:22.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-12-30 23:18:22.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:22.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-30 23:18:22.622][biodb::testThat]
biodb.INFO [2024-12-30 23:18:22.625][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2024-12-30 23:18:22.638][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-30 23:18:22.642][biodb::testThat]
biodb.TRACE[2024-12-30 23:18:22.651][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:22.653][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:22.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:22.657][ef$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:22.660][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2024-12-30 23:18:22.894][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:22.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:22.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:22.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:22.961][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:22.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:22.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:22.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:22.969][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:22.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:22.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:22.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:22.982][function(conn, opt)] With value "squalene".
biodb.DEBUG[2024-12-30 23:18:22.990][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-12-30 23:18:23.030][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-30 23:18:23.057][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-12-30 23:18:23.061][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:23.065][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-12-30 23:18:23.317][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-30 23:18:23.324][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-30 23:18:23.327][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-12-30 23:18:23.330][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:23.581][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-12-30 23:18:23.585][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2024-12-30 23:18:23.742][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:23.782][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:23.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:23.790][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:23.795][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:23.805][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:23.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:23.931][ef$get] fields variable is a list.
biodb.INFO [2024-12-30 23:18:23.945][biodb::testThat]
biodb.INFO [2024-12-30 23:18:23.948][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2024-12-30 23:18:23.950][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-30 23:18:23.952][biodb::testThat]
biodb.TRACE[2024-12-30 23:18:24.252][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:24.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:24.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:24.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:24.262][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:24.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:24.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:24.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:24.270][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:24.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:24.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:24.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:24.679][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-30 23:18:24.686][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-30 23:18:24.690][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-12-30 23:18:24.693][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:24.697][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2024-12-30 23:18:24.885][biodb::testThat]
biodb.INFO [2024-12-30 23:18:24.888][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2024-12-30 23:18:24.963][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-30 23:18:24.966][biodb::testThat]
biodb.TRACE[2024-12-30 23:18:25.219][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:25.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:25.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:25.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:25.314][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:25.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:25.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:25.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:25.323][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:25.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:25.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:25.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:25.350][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:25.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:25.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:25.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:25.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:25.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:25.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:25.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:25.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:25.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:25.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:25.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:25.392][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-30 23:18:25.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-30 23:18:25.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:25.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:25.400][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-30 23:18:25.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-30 23:18:25.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:25.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:25.420][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-30 23:18:25.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-30 23:18:25.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:25.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:25.429][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-30 23:18:25.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-30 23:18:25.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:25.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:25.480][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:25.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:25.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:25.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:25.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:25.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:25.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:25.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:25.506][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:25.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:25.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:25.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:25.516][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:25.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:25.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:25.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:25.525][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:25.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:25.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:25.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:25.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:25.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:25.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:25.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:25.543][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-30 23:18:25.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-30 23:18:25.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:25.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:25.553][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-30 23:18:25.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-30 23:18:25.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:25.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:25.566][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-30 23:18:25.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-30 23:18:25.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:25.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:25.575][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-30 23:18:25.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-30 23:18:25.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:25.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-30 23:18:25.652][biodb::testThat]
biodb.INFO [2024-12-30 23:18:25.654][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-12-30 23:18:25.656][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-30 23:18:25.659][biodb::testThat]
biodb.INFO [2024-12-30 23:18:25.779][biodb::testThat]
biodb.INFO [2024-12-30 23:18:25.781][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-12-30 23:18:25.783][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-30 23:18:25.785][biodb::testThat]
biodb.INFO [2024-12-30 23:18:25.803][biodb::testThat]
biodb.INFO [2024-12-30 23:18:25.806][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2024-12-30 23:18:25.808][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-30 23:18:25.810][biodb::testThat]
biodb.DEBUG[2024-12-30 23:18:25.817][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2024-12-30 23:18:27.102][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2024-12-30 23:18:28.139][biodb::testThat]
biodb.INFO [2024-12-30 23:18:28.141][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2024-12-30 23:18:28.144][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-30 23:18:28.146][biodb::testThat]
biodb.DEBUG[2024-12-30 23:18:28.586][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2024-12-30 23:18:29.036][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:29.038][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:29.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:29.043][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:29.067][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:29.069][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:29.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:29.074][ef$get] fields variable is a list.
biodb.INFO [2024-12-30 23:18:29.078][biodb::testThat]
biodb.INFO [2024-12-30 23:18:29.080][biodb::testThat] Running test function test.searchCompound (" We can search for a compound ").
biodb.INFO [2024-12-30 23:18:29.082][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-30 23:18:29.084][biodb::testThat]
biodb.TRACE[2024-12-30 23:18:29.110][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:29.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:29.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:29.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:29.120][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:29.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:29.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:29.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:29.129][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:29.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:29.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:29.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:29.547][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-30 23:18:29.554][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-30 23:18:29.558][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-12-30 23:18:29.561][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:29.565][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-12-30 23:18:29.707][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-30 23:18:29.714][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-30 23:18:29.717][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-12-30 23:18:29.720][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:29.724][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2024-12-30 23:18:29.847][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-30 23:18:29.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-30 23:18:29.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:29.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:29.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:29.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:29.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:29.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:29.976][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:29.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:29.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:29.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:29.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:29.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:29.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:29.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:29.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:29.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:29.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:30.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:30.002][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:30.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:30.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:30.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:30.021][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-30 23:18:30.027][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-30 23:18:30.030][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-12-30 23:18:30.033][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:30.163][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-12-30 23:18:30.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:30.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:30.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:30.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:30.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:30.188][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:30.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:30.193][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2024-12-30 23:18:30.282][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-30 23:18:30.286][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2024-12-30 23:18:30.290][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:30.434][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml".
biodb.DEBUG[2024-12-30 23:18:30.440][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-30 23:18:30.442][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-30 23:18:30.445][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-30 23:18:30.448][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:30.450][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:30.452][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:30.469][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:30.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:30.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:30.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:30.480][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:30.483][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:30.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:30.487][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:30.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:30.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:30.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:30.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:30.500][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:30.502][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:30.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:30.507][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:30.510][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:30.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:30.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:30.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:30.519][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:30.521][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:30.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:30.525][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:30.529][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:30.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:30.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:30.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:30.537][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:30.540][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:30.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:30.543][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:30.546][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:30.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:30.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:30.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:30.556][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:30.558][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:30.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:30.563][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:30.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:30.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:30.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:30.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:30.577][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:30.579][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:30.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:30.584][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:30.587][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:30.589][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:30.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:30.593][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:30.596][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:30.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:30.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:30.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:30.606][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:30.618][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:30.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:30.623][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:30.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:30.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:30.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:30.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:30.637][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:30.640][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:30.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:30.644][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:30.648][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:30.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:30.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:30.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:30.657][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:30.660][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:30.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:30.664][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:30.667][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:30.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:30.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:30.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:30.678][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:30.681][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:30.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:30.686][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:30.688][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:30.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:30.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:30.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:30.697][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:30.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:30.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:30.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:30.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:30.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:30.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:30.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:30.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:30.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:30.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:30.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:30.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:30.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:30.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:30.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:30.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:30.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:30.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:30.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:30.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:30.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:30.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:30.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:30.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:30.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:30.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:30.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:30.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:30.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:30.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:30.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:30.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:30.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:30.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:30.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:30.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:30.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:30.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:30.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:30.781][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2024-12-30 23:18:30.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:30.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:30.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:30.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:30.807][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:30.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:30.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:30.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:30.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:30.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:30.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:30.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:30.834][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-30 23:18:30.841][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-30 23:18:30.844][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-12-30 23:18:30.847][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:33.278][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-12-30 23:18:33.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:33.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:33.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:33.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:33.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:33.308][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:33.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:33.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:33.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:33.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:33.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:33.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.320][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:33.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:33.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:33.325][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:33.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:33.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:33.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:33.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:33.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:33.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:33.351][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2024-12-30 23:18:33.353][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-30 23:18:33.356][cch$loadFileContent] Trying to load 1 files from cache: [1]: "209892".
biodb.TRACE[2024-12-30 23:18:33.359][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:33.427][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml".
biodb.DEBUG[2024-12-30 23:18:33.428][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-30 23:18:33.430][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-30 23:18:33.432][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-30 23:18:33.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:33.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:33.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:33.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:33.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:33.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:33.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:33.454][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:33.455][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:33.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.458][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:33.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:33.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.464][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:33.466][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:33.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.474][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.475][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:33.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:33.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.481][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:33.482][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:33.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.484][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.486][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:33.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:33.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.491][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:33.492][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:33.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.495][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.496][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:33.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:33.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.503][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:33.505][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:33.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.509][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.511][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:33.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:33.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.519][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:33.521][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:33.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.525][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.527][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:33.529][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:33.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.533][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.534][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:33.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:33.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.539][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:33.540][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:33.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.543][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:33.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:33.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.550][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:33.551][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:33.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.553][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.555][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:33.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:33.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.560][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:33.561][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:33.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.564][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.565][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:33.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:33.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.570][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:33.572][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:33.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.574][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.575][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:33.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:33.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:33.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:33.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:33.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:33.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:33.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:33.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:33.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:33.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:33.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:33.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:33.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:33.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:33.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:33.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:33.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:33.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:33.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:33.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:33.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:33.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:33.637][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2024-12-30 23:18:33.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:33.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:33.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:33.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:33.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:33.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:33.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:33.721][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-30 23:18:33.725][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-30 23:18:33.727][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-12-30 23:18:33.729][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:33.731][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-12-30 23:18:33.737][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:33.738][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:33.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:33.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:33.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:33.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:33.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:33.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:33.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:33.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:33.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:33.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.775][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:33.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:33.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:33.783][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:33.784][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:33.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:33.797][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:33.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:33.799][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:33.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:33.808][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2024-12-30 23:18:33.809][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-30 23:18:33.811][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2024-12-30 23:18:33.813][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:33.879][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml".
biodb.DEBUG[2024-12-30 23:18:33.880][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-30 23:18:33.882][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-30 23:18:33.884][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-30 23:18:33.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:33.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:33.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:33.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:33.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:33.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:33.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:33.904][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:33.906][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:33.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.910][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:33.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:33.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.920][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:33.922][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:33.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.926][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.929][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:33.931][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:33.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.934][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.937][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:33.939][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:33.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.943][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.945][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:33.947][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:33.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.951][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.953][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:33.955][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:33.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.959][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.961][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:33.963][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:33.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.967][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.970][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:33.972][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:33.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.975][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.978][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:33.980][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:33.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.984][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.986][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:33.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:33.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:33.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:33.994][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:33.996][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:33.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.000][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.001][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:34.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:34.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.006][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:34.008][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:34.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.010][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:34.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:34.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:34.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:34.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:34.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:34.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:34.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:34.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:34.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:34.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:34.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:34.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:34.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:34.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:34.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:34.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:34.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:34.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:34.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:34.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:34.069][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2024-12-30 23:18:34.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:34.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:34.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.075][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:34.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:34.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:34.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:34.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:34.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:34.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:34.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:34.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:34.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:34.099][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:34.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:34.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:34.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:34.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:34.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:34.120][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2024-12-30 23:18:34.121][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-30 23:18:34.125][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2024-12-30 23:18:34.127][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:34.426][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml".
biodb.DEBUG[2024-12-30 23:18:34.428][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-30 23:18:34.429][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-30 23:18:34.431][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-30 23:18:34.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:34.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:34.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:34.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:34.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:34.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:34.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:34.470][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:34.471][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:34.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.474][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:34.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:34.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.481][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:34.482][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:34.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.484][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.514][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:34.516][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:34.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.519][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.520][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:34.522][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:34.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.524][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.526][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:34.527][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:34.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.530][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.531][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:34.533][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:34.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.535][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.537][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:34.539][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:34.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.541][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.543][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:34.544][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:34.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.546][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.548][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:34.550][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:34.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.554][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.557][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:34.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:34.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.565][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:34.567][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:34.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.571][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.573][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:34.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:34.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.581][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:34.584][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:34.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.587][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:34.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:34.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:34.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:34.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:34.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:34.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.613][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:34.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:34.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:34.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:34.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:34.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:34.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:34.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:34.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:34.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:34.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:34.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:34.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:34.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:34.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:34.661][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2024-12-30 23:18:34.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:34.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:34.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.668][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:34.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:34.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:34.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:34.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:34.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:34.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:34.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:34.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:34.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:34.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:34.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:34.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:34.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:34.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:34.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:34.734][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2024-12-30 23:18:34.735][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-30 23:18:34.737][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2024-12-30 23:18:34.739][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:34.771][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml".
biodb.DEBUG[2024-12-30 23:18:34.773][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-30 23:18:34.775][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-30 23:18:34.776][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-30 23:18:34.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:34.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:34.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:34.791][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:34.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:34.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:34.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:34.798][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:34.799][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:34.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.801][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:34.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:34.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.808][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:34.809][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:34.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.812][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.813][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:34.815][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:34.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.817][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.819][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:34.820][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:34.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.823][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.824][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:34.826][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:34.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.829][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.831][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:34.833][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:34.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.837][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.839][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:34.841][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:34.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.845][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.847][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:34.849][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:34.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.852][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.855][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:34.857][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:34.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.860][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.863][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:34.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:34.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.871][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:34.873][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:34.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.877][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.879][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:34.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:34.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.896][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:34.898][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:34.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.901][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:34.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:34.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:34.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:34.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:34.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:34.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:34.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:34.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:34.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:34.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:34.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:34.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:34.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:34.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:34.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:34.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:34.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:34.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:34.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:34.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:34.984][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2024-12-30 23:18:34.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:34.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:34.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:34.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:34.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:34.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:34.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:35.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:35.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:35.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:35.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:35.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:35.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:35.020][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:35.021][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:35.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:35.034][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:35.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:35.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:35.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:35.039][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2024-12-30 23:18:35.041][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-30 23:18:35.043][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2024-12-30 23:18:35.045][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:35.060][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml".
biodb.DEBUG[2024-12-30 23:18:35.062][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-30 23:18:35.064][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-30 23:18:35.066][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-30 23:18:35.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:35.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:35.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:35.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:35.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:35.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:35.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:35.090][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:35.091][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:35.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.094][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:35.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:35.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.100][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:35.102][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:35.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.104][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.106][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:35.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:35.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.112][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:35.114][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:35.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.118][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.121][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:35.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:35.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.128][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:35.130][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:35.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.134][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.136][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:35.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:35.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.144][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:35.146][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:35.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.150][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.152][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:35.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:35.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.157][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:35.159][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:35.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.161][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.163][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:35.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:35.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.168][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:35.170][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:35.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.172][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.174][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:35.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:35.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.179][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:35.180][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:35.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.182][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:35.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:35.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.189][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:35.191][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:35.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.193][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.195][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:35.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:35.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.200][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:35.201][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:35.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.204][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.205][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:35.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:35.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.210][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:35.212][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:35.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.214][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.216][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:35.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:35.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.227][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:35.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:35.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:35.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:35.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:35.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:35.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:35.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:35.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:35.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:35.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:35.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:35.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:35.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:35.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:35.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:35.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:35.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:35.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:35.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:35.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:35.293][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2024-12-30 23:18:35.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:35.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:35.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:35.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:35.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:35.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:35.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:35.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:35.315][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:35.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:35.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:35.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:35.477][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:35.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:35.479][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2024-12-30 23:18:35.480][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-30 23:18:35.482][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2024-12-30 23:18:35.485][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:35.689][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml".
biodb.DEBUG[2024-12-30 23:18:35.690][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-30 23:18:35.692][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-30 23:18:35.694][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-30 23:18:35.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:35.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:35.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:35.714][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:35.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:35.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:35.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:35.722][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:35.724][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:35.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.726][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:35.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:35.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.738][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:35.740][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:35.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.743][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.745][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:35.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:35.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.750][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:35.751][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:35.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.753][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.755][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:35.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:35.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.760][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:35.761][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:35.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.764][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.765][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:35.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:35.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.771][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:35.772][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:35.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.774][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.776][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:35.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:35.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.781][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:35.782][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:35.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.784][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.786][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:35.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:35.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.791][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:35.792][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:35.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.794][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.796][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:35.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:35.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.801][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:35.802][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:35.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.804][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:35.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:35.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.811][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:35.812][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:35.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.815][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.816][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:35.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:35.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.822][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:35.823][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:35.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.825][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.827][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:35.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:35.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.832][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:35.833][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:35.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.836][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.837][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:35.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:35.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:35.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:35.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:35.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:35.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:35.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:35.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:35.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:35.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:35.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:35.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:35.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:35.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:35.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:35.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:35.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:35.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:35.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:35.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:35.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:35.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:35.900][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2024-12-30 23:18:35.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:35.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:35.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:35.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:35.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:35.911][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:35.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:35.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:35.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:35.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:35.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:35.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:35.933][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:35.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:35.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:35.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:35.938][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2024-12-30 23:18:35.940][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-30 23:18:35.942][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2024-12-30 23:18:35.944][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:36.409][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml".
biodb.DEBUG[2024-12-30 23:18:36.410][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-30 23:18:36.412][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-30 23:18:36.414][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-30 23:18:36.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:36.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:36.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:36.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:36.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:36.430][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:36.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:36.434][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:36.435][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:36.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:36.438][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:36.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:36.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:36.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:36.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:36.446][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:36.448][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:36.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:36.451][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:36.453][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:36.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:36.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:36.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:36.461][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:36.463][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:36.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:36.467][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:36.469][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:36.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:36.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:36.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:36.481][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:36.483][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:36.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:36.485][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:36.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:36.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:36.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:36.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:36.492][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:36.493][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:36.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:36.496][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:36.497][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:36.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:36.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:36.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:36.502][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:36.503][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:36.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:36.506][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:36.507][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:36.509][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:36.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:36.511][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:36.512][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:36.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:36.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:36.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:36.517][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:36.519][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:36.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:36.521][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:36.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:36.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:36.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:36.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:36.528][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:36.529][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:36.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:36.531][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:36.533][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:36.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:36.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:36.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:36.538][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:36.539][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:36.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:36.542][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:36.543][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:36.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:36.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:36.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:36.548][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:36.549][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:36.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:36.552][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:36.553][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:36.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:36.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:36.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:36.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:36.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:36.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:36.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:36.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:36.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:36.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:36.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:36.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:36.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:36.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:36.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:36.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:36.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:36.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:36.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:36.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:36.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:36.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:36.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:36.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:36.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:36.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:36.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:36.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:36.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:36.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:36.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:36.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:36.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:36.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:36.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:36.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:36.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:36.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:36.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:36.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:36.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:36.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:36.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:36.613][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2024-12-30 23:18:36.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:36.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:36.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:36.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:36.619][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:36.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:36.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:36.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:36.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:36.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:36.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:36.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:36.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:36.630][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:36.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:37.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:37.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:37.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:37.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:37.132][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2024-12-30 23:18:37.134][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-30 23:18:37.136][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2024-12-30 23:18:37.138][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:37.155][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml".
biodb.DEBUG[2024-12-30 23:18:37.157][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-30 23:18:37.159][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-30 23:18:37.161][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-30 23:18:37.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:37.164][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:37.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:37.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:37.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:37.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:37.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:37.200][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:37.201][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:37.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.204][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:37.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:37.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.212][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:37.213][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:37.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.216][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.218][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:37.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:37.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.223][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:37.224][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:37.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.227][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.228][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:37.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:37.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.234][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:37.235][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:37.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.238][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.239][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:37.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:37.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.245][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:37.246][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:37.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.248][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.250][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:37.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:37.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.263][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:37.264][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:37.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.266][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.268][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:37.269][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:37.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.272][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.273][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:37.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:37.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.279][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:37.280][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:37.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.282][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:37.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:37.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.289][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:37.291][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:37.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.293][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.296][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:37.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:37.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.301][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:37.303][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:37.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.305][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.307][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:37.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:37.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.312][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:37.313][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:37.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.315][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.317][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:37.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:37.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:37.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:37.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:37.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:37.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:37.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:37.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:37.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:37.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:37.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:37.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:37.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:37.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:37.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:37.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:37.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:37.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:37.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:37.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:37.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:37.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:37.393][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2024-12-30 23:18:37.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:37.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:37.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:37.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:37.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:37.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:37.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:37.418][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:37.419][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:37.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:37.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:37.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:37.432][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:37.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:37.434][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2024-12-30 23:18:37.436][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-30 23:18:37.438][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2024-12-30 23:18:37.440][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:37.829][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml".
biodb.DEBUG[2024-12-30 23:18:37.831][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-30 23:18:37.833][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-30 23:18:37.834][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-30 23:18:37.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:37.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:37.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:37.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:37.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:37.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:37.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:37.862][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:37.863][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:37.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.866][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:37.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:37.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.872][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:37.874][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:37.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.876][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.878][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:37.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:37.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.883][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:37.884][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:37.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.887][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.888][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:37.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:37.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.893][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:37.895][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:37.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.897][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:37.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:37.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.904][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:37.905][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:37.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.908][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.909][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:37.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:37.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.914][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:37.916][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:37.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.918][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.919][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:37.921][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:37.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.923][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.925][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:37.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:37.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.931][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:37.938][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:37.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.942][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.944][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:37.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:37.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.949][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:37.951][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:37.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.953][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.955][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:37.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:37.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.961][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:37.963][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:37.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.965][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.967][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:37.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:37.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.973][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:37.976][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:37.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.979][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.982][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:37.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:37.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:37.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:37.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:37.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:37.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:38.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:38.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:38.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:38.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:38.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:38.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:38.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:38.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:38.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:38.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:38.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:38.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:38.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:38.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:38.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:38.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:38.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:38.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:38.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:38.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:38.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:38.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:38.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:38.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:38.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:38.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:38.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:38.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:38.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:38.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:38.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:38.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:38.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:38.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:38.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:38.052][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2024-12-30 23:18:38.054][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:38.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:38.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:38.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:38.062][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:38.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:38.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:38.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:38.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:38.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:38.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:38.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:38.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:38.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:38.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:38.118][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:38.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:38.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:38.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:38.129][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2024-12-30 23:18:38.131][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-30 23:18:38.134][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2024-12-30 23:18:38.136][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:39.039][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml".
biodb.DEBUG[2024-12-30 23:18:39.041][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-30 23:18:39.043][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-30 23:18:39.044][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-30 23:18:39.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:39.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:39.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:39.062][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:39.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:39.065][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:39.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:39.069][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:39.070][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:39.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.073][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:39.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:39.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.082][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:39.084][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:39.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.088][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.090][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:39.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:39.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.098][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:39.100][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:39.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.102][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.104][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:39.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:39.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.110][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:39.111][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:39.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.114][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.116][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:39.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:39.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.121][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:39.122][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:39.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.124][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.126][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:39.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:39.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.131][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:39.133][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:39.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.135][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.137][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:39.138][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:39.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.140][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.142][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:39.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:39.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.149][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:39.152][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:39.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.155][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:39.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:39.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.166][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:39.169][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:39.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.171][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.173][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:39.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:39.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.178][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:39.187][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:39.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.192][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.195][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:39.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:39.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.203][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:39.205][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:39.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.209][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.211][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:39.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:39.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:39.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:39.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:39.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:39.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:39.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:39.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:39.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:39.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:39.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:39.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:39.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:39.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:39.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:39.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:39.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:39.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:39.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:39.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:39.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:39.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:39.278][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2024-12-30 23:18:39.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:39.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:39.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:39.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:39.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:39.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:39.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:39.295][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:39.296][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:39.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:39.308][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:39.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:39.311][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:39.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:39.314][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2024-12-30 23:18:39.315][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-30 23:18:39.319][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2024-12-30 23:18:39.321][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:39.683][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml".
biodb.DEBUG[2024-12-30 23:18:39.685][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-30 23:18:39.686][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-30 23:18:39.688][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-30 23:18:39.690][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:39.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:39.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:39.713][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:39.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:39.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:39.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:39.723][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:39.725][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:39.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.729][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:39.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:39.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.740][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:39.742][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:39.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.746][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.749][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:39.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:39.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.757][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:39.759][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:39.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.763][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.765][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:39.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:39.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.774][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:39.776][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:39.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.780][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.782][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:39.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:39.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.791][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:39.793][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:39.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.797][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.799][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:39.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:39.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.808][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:39.810][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:39.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.814][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.816][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:39.819][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:39.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.822][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.825][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:39.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:39.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.834][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:39.836][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:39.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.840][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.843][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:39.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:39.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.852][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:39.854][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:39.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.858][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.861][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:39.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:39.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.868][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:39.870][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:39.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.874][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.876][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:39.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:39.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.884][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:39.886][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:39.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.890][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.893][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:39.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:39.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:39.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:39.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:39.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:39.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:39.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:39.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:39.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:39.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:39.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:39.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:39.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:39.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:39.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:39.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:39.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:39.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:39.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:39.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:39.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:39.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:39.984][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2024-12-30 23:18:39.987][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:39.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:39.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:39.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:39.995][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:39.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:39.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.002][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:40.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:40.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:40.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:40.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:40.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:40.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:40.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:40.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:40.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:40.036][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2024-12-30 23:18:40.037][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-30 23:18:40.039][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2024-12-30 23:18:40.041][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:40.129][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml".
biodb.DEBUG[2024-12-30 23:18:40.130][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-30 23:18:40.133][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-30 23:18:40.135][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-30 23:18:40.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:40.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:40.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:40.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:40.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:40.153][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:40.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:40.157][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:40.160][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:40.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.164][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:40.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:40.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.183][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:40.186][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:40.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.190][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.193][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:40.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:40.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.201][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:40.203][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:40.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.207][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.209][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:40.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:40.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.218][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:40.219][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:40.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.221][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.223][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:40.224][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:40.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.227][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.228][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:40.229][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:40.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.232][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.233][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:40.235][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:40.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.237][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.239][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:40.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:40.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.244][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:40.245][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:40.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.247][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.249][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:40.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:40.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.254][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:40.256][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:40.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.258][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.260][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:40.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:40.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.265][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:40.266][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:40.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.269][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.270][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:40.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:40.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.275][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:40.276][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:40.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.279][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:40.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:40.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:40.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:40.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:40.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:40.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:40.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:40.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:40.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:40.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:40.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:40.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:40.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:40.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:40.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:40.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:40.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:40.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:40.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:40.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:40.340][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2024-12-30 23:18:40.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:40.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:40.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:40.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:40.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.352][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:40.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:40.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:40.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:40.358][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:40.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:40.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:40.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:40.372][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:40.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:40.375][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2024-12-30 23:18:40.376][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-30 23:18:40.378][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2024-12-30 23:18:40.381][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:40.440][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml".
biodb.DEBUG[2024-12-30 23:18:40.443][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-30 23:18:40.445][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-30 23:18:40.448][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-30 23:18:40.450][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:40.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:40.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:40.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:40.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:40.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:40.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:40.472][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:40.474][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:40.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.477][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:40.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:40.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.487][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:40.489][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:40.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.493][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.495][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:40.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:40.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.503][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:40.505][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:40.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.508][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.511][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:40.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:40.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.519][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:40.520][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:40.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.524][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.526][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:40.529][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:40.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.532][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.535][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:40.544][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:40.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.549][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.551][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:40.554][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:40.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.557][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.560][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:40.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:40.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.568][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:40.570][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:40.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.574][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:40.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:40.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.585][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:40.587][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:40.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.590][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.593][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:40.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:40.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.601][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:40.603][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:40.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.607][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.609][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:40.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:40.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.618][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:40.620][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:40.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.624][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:40.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:40.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:40.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:40.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:40.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:40.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:40.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:40.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:40.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:40.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:40.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:40.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:40.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:40.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:40.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:40.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:40.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:40.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:40.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:40.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:40.704][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2024-12-30 23:18:40.706][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:40.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:40.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:40.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:40.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:40.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:40.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:40.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:40.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:40.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:40.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:40.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:40.759][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:40.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:40.762][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2024-12-30 23:18:40.763][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-30 23:18:40.765][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2024-12-30 23:18:40.767][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:40.875][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml".
biodb.DEBUG[2024-12-30 23:18:40.877][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-30 23:18:40.878][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-30 23:18:40.880][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-30 23:18:40.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:40.883][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:40.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:40.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:40.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:40.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:40.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:40.933][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:40.935][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:40.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.939][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:40.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:40.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.949][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:40.951][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:40.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.955][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.957][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:40.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:40.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.965][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:40.967][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:40.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.971][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.973][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:40.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:40.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.981][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:40.983][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:40.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.986][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:40.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:40.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.993][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:40.994][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:40.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:40.996][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:40.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:40.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:41.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.003][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:41.005][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:41.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.008][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.011][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:41.013][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:41.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.016][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.018][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:41.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:41.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.026][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:41.028][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:41.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.031][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:41.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:41.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.050][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:41.052][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:41.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.056][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.059][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:41.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:41.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.068][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:41.070][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:41.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.074][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.076][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:41.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:41.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.084][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:41.087][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:41.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.090][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.093][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:41.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:41.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:41.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:41.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:41.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:41.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:41.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:41.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:41.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:41.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:41.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:41.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:41.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:41.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:41.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:41.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:41.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:41.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:41.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:41.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:41.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:41.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:41.177][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2024-12-30 23:18:41.180][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:41.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:41.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:41.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:41.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:41.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:41.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:41.203][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:41.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:41.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:41.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:41.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:41.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:41.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:41.226][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2024-12-30 23:18:41.227][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-30 23:18:41.238][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2024-12-30 23:18:41.241][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:41.444][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml".
biodb.DEBUG[2024-12-30 23:18:41.446][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-30 23:18:41.448][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-30 23:18:41.449][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-30 23:18:41.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:41.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:41.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:41.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:41.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:41.464][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:41.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:41.468][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:41.470][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:41.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.473][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:41.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:41.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.480][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:41.482][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:41.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.485][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.486][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:41.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:41.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.492][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:41.494][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:41.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.496][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.497][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:41.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:41.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.503][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:41.504][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:41.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.506][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.508][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:41.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:41.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.513][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:41.515][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:41.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.517][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.519][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:41.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:41.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.527][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:41.529][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:41.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.532][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.534][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:41.535][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:41.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.538][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.539][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:41.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:41.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.544][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:41.545][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:41.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.548][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.549][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:41.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:41.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.554][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:41.556][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:41.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.558][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.560][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:41.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:41.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.565][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:41.566][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:41.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.568][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.570][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:41.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:41.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.581][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:41.583][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:41.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.585][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.587][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:41.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:41.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:41.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:41.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:41.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:41.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:41.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:41.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:41.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:41.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:41.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:41.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:41.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:41.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:41.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:41.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:41.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:41.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:41.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:41.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:41.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:41.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:41.652][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2024-12-30 23:18:41.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:41.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:41.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:41.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:41.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.671][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:41.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:41.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:41.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:41.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:41.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:41.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:41.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:41.695][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:41.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:41.699][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2024-12-30 23:18:41.701][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-30 23:18:41.704][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2024-12-30 23:18:41.707][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:41.771][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml".
biodb.DEBUG[2024-12-30 23:18:41.772][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-30 23:18:41.774][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-30 23:18:41.776][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-30 23:18:41.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:41.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:41.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:41.793][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:41.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:41.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:41.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:41.809][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:41.811][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:41.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.815][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:41.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:41.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.822][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:41.824][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:41.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.826][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.828][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:41.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:41.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.833][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:41.835][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:41.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.837][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.839][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:41.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:41.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.844][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:41.846][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:41.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.848][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.850][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:41.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:41.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.855][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:41.856][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:41.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.859][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:41.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:41.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.866][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:41.867][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:41.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.869][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.871][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:41.872][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:41.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.874][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.876][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:41.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:41.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.881][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:41.882][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:41.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.885][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:41.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:41.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.891][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:41.892][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:41.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.896][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.898][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:41.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:41.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.906][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:41.908][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:41.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.912][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.915][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:41.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:41.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.923][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:41.925][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:41.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.929][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.931][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:41.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:41.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:41.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:41.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:41.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:41.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:41.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:41.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:41.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:41.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:41.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:41.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:41.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:41.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:41.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:41.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:41.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:42.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:42.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:42.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:42.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:42.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:42.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:42.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:42.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:42.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:42.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:42.030][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2024-12-30 23:18:42.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:42.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:42.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:42.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:42.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:42.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:42.048][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:42.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:42.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:42.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:42.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:42.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:42.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:42.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:42.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:42.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:42.081][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2024-12-30 23:18:42.082][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-30 23:18:42.084][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2024-12-30 23:18:42.086][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:42.103][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml".
biodb.DEBUG[2024-12-30 23:18:42.105][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-30 23:18:42.107][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-30 23:18:42.108][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-30 23:18:42.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:42.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:42.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:42.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:42.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:42.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:42.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:42.132][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:42.133][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:42.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.135][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:42.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:42.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:42.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:42.142][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:42.143][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:42.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.146][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:42.148][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:42.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:42.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:42.159][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:42.161][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:42.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.163][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:42.165][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:42.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:42.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:42.170][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:42.171][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:42.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.174][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:42.175][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:42.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:42.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:42.180][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:42.182][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:42.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.184][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:42.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:42.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:42.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:42.192][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:42.194][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:42.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.197][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:42.200][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:42.202][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:42.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.205][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:42.208][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:42.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:42.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:42.216][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:42.218][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:42.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.221][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:42.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:42.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:42.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:42.229][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:42.230][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:42.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.232][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:42.234][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:42.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:42.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:42.239][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:42.240][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:42.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.243][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:42.244][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:42.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:42.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:42.249][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:42.250][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:42.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.253][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:42.254][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:42.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:42.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:42.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:42.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:42.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:42.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:42.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:42.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:42.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:42.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:42.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:42.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:42.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:42.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:42.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:42.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:42.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:42.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:42.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:42.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:42.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:42.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:42.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:42.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:42.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:42.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:42.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:42.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:42.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:42.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:42.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:42.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:42.315][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2024-12-30 23:18:42.316][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:42.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:42.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:42.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:42.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:42.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:42.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:42.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:42.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:42.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:42.331][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:42.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:42.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:42.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:42.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:42.355][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:42.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:42.360][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2024-12-30 23:18:42.362][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-30 23:18:42.364][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2024-12-30 23:18:42.366][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:43.158][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml".
biodb.DEBUG[2024-12-30 23:18:43.159][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-30 23:18:43.161][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-30 23:18:43.163][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-30 23:18:43.165][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:43.166][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:43.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:43.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:43.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:43.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:43.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:43.185][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:43.186][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:43.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.188][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:43.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:43.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.195][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:43.197][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:43.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.199][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.200][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:43.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:43.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.205][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:43.207][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:43.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.211][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.214][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:43.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:43.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.222][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:43.224][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:43.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.226][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.234][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:43.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:43.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.240][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:43.241][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:43.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.243][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.245][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:43.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:43.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.250][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:43.251][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:43.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.254][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.255][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:43.257][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:43.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.259][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.261][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:43.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:43.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.266][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:43.267][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:43.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.269][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:43.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:43.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.276][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:43.277][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:43.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.280][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.281][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:43.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:43.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.287][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:43.288][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:43.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.290][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.292][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:43.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:43.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.297][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:43.298][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:43.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.300][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.302][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:43.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:43.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:43.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:43.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:43.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:43.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:43.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:43.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:43.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:43.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:43.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:43.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:43.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:43.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:43.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:43.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:43.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:43.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:43.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:43.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:43.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:43.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:43.368][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2024-12-30 23:18:43.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:43.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:43.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:43.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:43.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:43.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:43.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:43.391][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:43.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:43.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:43.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:43.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:43.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:43.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:43.413][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2024-12-30 23:18:43.415][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-30 23:18:43.418][cch$loadFileContent] Trying to load 1 files from cache: [1]: "198655".
biodb.TRACE[2024-12-30 23:18:43.420][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:43.434][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml".
biodb.DEBUG[2024-12-30 23:18:43.436][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-30 23:18:43.438][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-30 23:18:43.439][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-30 23:18:43.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:43.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:43.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:43.456][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:43.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:43.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:43.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:43.462][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:43.464][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:43.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.466][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:43.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:43.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.473][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:43.474][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:43.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.476][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.478][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:43.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:43.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.483][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:43.484][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:43.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.486][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.488][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:43.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:43.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.493][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:43.494][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:43.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.497][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.498][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:43.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:43.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.503][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:43.505][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:43.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.507][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.509][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:43.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:43.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.514][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:43.522][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:43.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.527][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.529][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:43.532][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:43.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.536][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.538][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:43.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:43.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.546][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:43.548][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:43.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.552][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:43.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:43.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.563][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:43.565][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:43.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.568][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.570][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:43.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:43.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.575][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:43.576][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:43.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.578][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.580][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:43.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:43.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.585][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:43.586][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:43.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.589][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.590][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:43.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:43.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:43.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:43.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:43.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:43.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:43.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:43.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:43.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:43.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:43.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:43.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:43.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:43.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:43.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:43.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:43.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:43.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:43.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:43.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:43.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:43.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:43.647][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2024-12-30 23:18:43.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:43.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:43.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:43.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:43.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:43.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:43.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:43.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:43.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:43.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:43.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:43.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:43.679][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:43.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:43.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:43.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:43.684][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2024-12-30 23:18:43.686][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-30 23:18:43.688][cch$loadFileContent] Trying to load 1 files from cache: [1]: "215045".
biodb.TRACE[2024-12-30 23:18:43.690][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:44.152][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml".
biodb.DEBUG[2024-12-30 23:18:44.154][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-30 23:18:44.156][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-30 23:18:44.157][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-30 23:18:44.159][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:44.160][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:44.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:44.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:44.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:44.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:44.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:44.175][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:44.176][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:44.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.178][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:44.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:44.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.185][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:44.186][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:44.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.188][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.190][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:44.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:44.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.195][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:44.196][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:44.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.199][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.200][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:44.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:44.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.205][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:44.207][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:44.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.209][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.211][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:44.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:44.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.216][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:44.217][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:44.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.219][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.221][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:44.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:44.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.227][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:44.229][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:44.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.233][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.235][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:44.237][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.240][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.242][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:44.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.250][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:44.252][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:44.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.264][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:44.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:44.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.275][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:44.277][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:44.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.281][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.283][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:44.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:44.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.291][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:44.293][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:44.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.296][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.298][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:44.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:44.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.306][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:44.308][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:44.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.311][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.313][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:44.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:44.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:44.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:44.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:44.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:44.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:44.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:44.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:44.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:44.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:44.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:44.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:44.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:44.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:44.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:44.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:44.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:44.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:44.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:44.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:44.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:44.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:44.385][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2024-12-30 23:18:44.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:44.476][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-30 23:18:44.481][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-30 23:18:44.483][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-12-30 23:18:44.485][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:44.487][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-12-30 23:18:44.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:44.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:44.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:44.509][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:44.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:44.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:44.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:44.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.522][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:44.532][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:44.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:44.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:44.544][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:44.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:44.547][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:44.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:44.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.554][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:44.574][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:44.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:44.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:44.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:44.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:44.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:44.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:44.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:44.628][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:44.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:44.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:44.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:44.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:44.651][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:44.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:44.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:44.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:44.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:44.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:44.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:44.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:44.704][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:44.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:44.706][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:44.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:44.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:44.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:44.737][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:44.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:44.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:44.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:44.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:44.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:44.764][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:44.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:44.778][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:44.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:44.781][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:44.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:44.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.802][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:44.807][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:44.808][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:44.809][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:44.816][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:44.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:44.820][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:44.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:44.823][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:44.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:44.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:44.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:44.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:44.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:44.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:44.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:44.866][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.871][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.876][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:44.881][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:44.882][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:44.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:44.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:44.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:44.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:44.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:44.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.908][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:44.913][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:44.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:44.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:44.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:44.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:44.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:44.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:44.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:44.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:44.956][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:44.957][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:44.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:44.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:44.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:44.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:44.976][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.984][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:44.992][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:44.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:44.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:44.999][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:45.001][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:45.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:45.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:45.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:45.015][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:45.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:45.018][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:45.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:45.023][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:45.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:45.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:45.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:45.033][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:45.034][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:45.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:45.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:45.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:45.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:45.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:45.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:45.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:45.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:45.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:45.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:45.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:45.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:45.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:45.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:45.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:45.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:45.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:45.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:45.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:45.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:45.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:45.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:45.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:45.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:45.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:45.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:45.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:45.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:45.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:45.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:45.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:45.142][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:45.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:45.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:45.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:45.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:45.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:45.165][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:45.167][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:45.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:45.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:45.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:45.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:45.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:45.186][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:45.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:45.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:45.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:45.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:45.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:45.203][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:45.204][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:45.205][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:45.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:45.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:45.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:45.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:45.227][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:45.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:45.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:45.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:45.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:45.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:45.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:45.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:45.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:45.257][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:45.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:45.260][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:45.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:45.262][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:45.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:45.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:45.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:45.272][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:45.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:45.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:45.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:45.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:45.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:45.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:45.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:45.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:45.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:45.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:45.308][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:45.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:45.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:45.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:45.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:45.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:45.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:45.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:45.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:45.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:45.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:45.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:45.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:45.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:45.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:45.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:45.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:45.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:45.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:45.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:45.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:45.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:45.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:45.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:45.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:45.422][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-30 23:18:45.434][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-30 23:18:45.436][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c5171beada848a87ef2ffa10427d9be3".
biodb.TRACE[2024-12-30 23:18:45.438][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:45.455][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.content".
biodb.DEBUG[2024-12-30 23:18:45.459][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-30 23:18:45.463][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-30 23:18:45.465][cch$loadFileContent] Trying to load 1 files from cache: [1]: "750e63ff76a843f016511fa71c89113e".
biodb.TRACE[2024-12-30 23:18:45.467][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:45.487][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.content".
biodb.DEBUG[2024-12-30 23:18:45.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:45.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:45.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:45.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:45.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:45.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:45.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:45.895][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2024-12-30 23:18:45.896][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-30 23:18:45.898][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2024-12-30 23:18:45.901][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:45.937][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml".
biodb.DEBUG[2024-12-30 23:18:45.939][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-30 23:18:45.941][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-30 23:18:45.942][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-30 23:18:45.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:45.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:45.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:45.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:45.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:45.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:45.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:45.967][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:45.970][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:45.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:45.974][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:45.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:45.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:45.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:45.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:45.985][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:45.987][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:45.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:45.989][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:45.991][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:45.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:45.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:45.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:45.997][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:45.999][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:46.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.002][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.005][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:46.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:46.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.011][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:46.013][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:46.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.015][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.017][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:46.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:46.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.022][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:46.023][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:46.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.025][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.027][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:46.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:46.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.032][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:46.034][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:46.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.037][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.046][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:46.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:46.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.053][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:46.054][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:46.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.058][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.059][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:46.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:46.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.064][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.066][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.070][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.079][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:46.081][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:46.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.083][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.085][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:46.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:46.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.091][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:46.092][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:46.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.096][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.098][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:46.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:46.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.106][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:46.109][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:46.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.112][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.115][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:46.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:46.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:46.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:46.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:46.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:46.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:46.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:46.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:46.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:46.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:46.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:46.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:46.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:46.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:46.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:46.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:46.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:46.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:46.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:46.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:46.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:46.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:46.194][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2024-12-30 23:18:46.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:46.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:46.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:46.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:46.254][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:46.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:46.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:46.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:46.263][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:46.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:46.289][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:46.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:46.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:46.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:46.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:46.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:46.309][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2024-12-30 23:18:46.310][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-30 23:18:46.312][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2024-12-30 23:18:46.315][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:46.331][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml".
biodb.DEBUG[2024-12-30 23:18:46.333][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-30 23:18:46.335][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-30 23:18:46.336][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-30 23:18:46.338][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:46.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:46.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:46.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:46.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:46.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:46.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:46.363][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:46.365][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:46.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.369][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:46.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:46.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.379][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:46.381][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:46.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.385][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.388][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:46.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:46.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.394][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:46.396][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:46.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.399][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.400][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:46.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:46.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.406][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:46.407][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:46.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.410][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:46.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:46.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.428][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:46.430][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:46.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.433][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.435][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:46.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:46.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.440][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:46.442][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:46.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.444][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.445][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:46.447][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:46.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.450][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.453][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:46.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:46.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.461][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.463][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.467][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.478][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:46.480][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:46.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.484][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.486][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:46.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:46.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.494][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:46.496][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:46.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.500][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.502][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:46.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:46.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.511][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:46.513][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:46.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.517][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.519][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:46.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:46.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:46.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:46.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:46.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:46.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:46.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:46.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:46.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:46.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:46.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:46.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:46.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:46.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:46.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:46.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:46.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:46.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:46.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:46.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:46.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:46.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:46.817][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2024-12-30 23:18:46.819][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:46.880][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-30 23:18:46.884][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-30 23:18:46.886][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-12-30 23:18:46.889][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:46.891][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-12-30 23:18:46.895][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:46.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:46.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:46.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:46.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:46.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:46.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:46.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.937][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:46.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:46.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:46.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:46.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:46.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:46.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:46.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:46.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:46.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:46.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:46.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:46.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:46.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:46.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:46.994][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:46.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:46.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:46.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:46.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.022][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:47.027][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:47.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:47.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:47.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:47.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:47.040][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:47.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:47.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:47.072][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:47.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:47.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:47.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:47.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:47.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:47.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:47.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.103][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:47.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:47.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:47.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:47.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:47.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:47.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:47.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:47.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:47.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:47.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:47.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:47.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:47.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:47.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:47.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:47.187][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:47.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:47.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:47.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:47.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:47.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:47.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:47.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:47.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:47.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:47.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:47.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:47.265][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:47.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:47.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:47.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:47.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:47.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:47.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:47.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:47.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:47.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:47.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:47.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:47.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:47.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:47.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:47.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:47.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:47.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:47.351][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:47.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:47.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:47.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:47.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:47.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:47.390][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:47.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:47.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:47.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:47.397][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.403][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.409][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:47.414][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:47.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:47.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:47.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:47.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:47.432][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:47.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:47.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.453][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:47.458][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:47.459][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:47.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:47.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:47.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:47.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:47.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:47.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:47.493][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:47.494][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:47.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:47.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:47.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:47.505][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:47.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:47.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.512][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.517][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:47.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:47.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:47.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:47.536][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:47.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:47.539][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:47.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:47.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.549][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:47.562][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:47.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:47.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:47.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:47.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:47.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:47.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:47.577][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.585][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:47.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:47.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:47.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:47.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:47.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:47.616][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:47.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:47.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:47.643][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:47.644][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:47.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:47.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:47.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:47.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:47.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:47.665][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:47.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:47.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:47.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:47.703][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:47.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:47.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:47.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:47.711][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:47.768][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-30 23:18:47.772][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-30 23:18:47.774][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-12-30 23:18:47.776][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:47.778][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-12-30 23:18:47.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:47.784][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:47.785][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:47.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:47.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:47.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:47.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:47.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:47.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:47.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:47.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:47.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:47.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:47.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:47.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:47.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:47.892][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:47.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:47.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:47.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:47.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:47.915][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:47.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:47.919][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:47.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:47.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:47.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:47.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:47.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:47.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:47.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:47.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:47.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:47.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:47.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:48.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:48.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:48.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:48.029][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:48.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:48.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:48.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:48.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:48.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:48.059][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:48.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:48.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:48.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:48.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:48.089][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:48.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:48.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:48.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:48.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:48.114][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:48.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:48.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:48.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:48.128][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:48.133][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:48.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:48.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:48.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:48.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:48.160][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:48.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:48.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:48.172][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:48.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:48.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:48.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:48.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:48.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:48.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:48.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:48.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:48.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:48.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:48.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:48.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:48.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:48.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:48.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:48.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:48.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:48.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:48.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:48.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:48.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:48.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:48.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:48.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:48.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:48.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:48.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:48.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:48.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:48.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:48.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:48.295][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:48.297][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:48.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:48.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:48.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:48.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:48.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:48.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:48.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:48.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:48.338][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:48.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:48.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:48.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:48.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:48.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:48.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:48.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:48.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:48.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:48.380][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:48.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:48.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:48.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:48.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:48.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:48.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:48.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:48.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:48.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:48.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:48.672][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:48.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:48.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:48.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:48.689][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:48.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:48.693][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:48.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:48.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:48.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:48.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:48.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:48.727][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:48.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:48.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:48.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:48.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:48.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:48.750][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:48.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:48.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:48.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:48.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:48.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:48.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:48.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:48.782][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:48.787][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:48.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:48.797][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:48.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:48.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:48.807][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:48.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:48.811][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:48.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:48.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:48.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:48.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:48.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:48.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:48.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:48.859][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:48.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:48.861][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:48.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:48.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:48.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:48.876][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:48.880][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:48.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:48.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:48.894][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:48.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:48.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:48.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:48.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:48.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:48.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:48.922][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:48.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:48.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:48.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:48.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:48.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:48.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:48.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:48.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:48.965][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:48.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:48.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.003][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-30 23:18:49.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-30 23:18:49.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-30 23:18:49.028][biodb::testThat]
biodb.INFO [2024-12-30 23:18:49.029][biodb::testThat] Running test function test_annotateMzValues_input_vector (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2024-12-30 23:18:49.031][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-30 23:18:49.032][biodb::testThat]
biodb.TRACE[2024-12-30 23:18:49.036][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-30 23:18:49.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-30 23:18:49.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:49.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:49.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.047][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:49.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:49.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:49.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:49.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:49.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:49.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:49.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:49.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:49.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:49.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:49.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:49.092][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:49.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:49.096][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-30 23:18:49.100][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-30 23:18:49.102][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-12-30 23:18:49.103][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:49.105][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-12-30 23:18:49.108][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:49.109][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:49.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:49.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:49.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:49.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:49.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:49.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:49.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:49.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:49.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:49.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:49.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:49.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:49.139][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-30 23:18:49.142][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-30 23:18:49.144][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-12-30 23:18:49.145][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:49.148][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-12-30 23:18:49.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:49.151][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:49.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:49.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:49.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:49.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:49.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:49.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:49.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:49.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:49.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:49.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:49.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:49.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:49.179][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:49.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:49.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:49.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:49.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:49.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:49.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:49.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:49.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:49.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:49.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:49.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:49.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:49.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:49.223][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-30 23:18:49.226][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:49.227][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:49.229][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:49.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:49.244][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:49.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:49.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:49.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.267][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:49.268][private$selectFields]
biodb.TRACE[2024-12-30 23:18:49.270][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-30 23:18:49.272][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-30 23:18:49.274][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:49.276][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.278][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.282][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.284][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.286][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.290][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.292][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:49.293][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:49.294][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.296][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.298][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.299][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-30 23:18:49.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.324][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-12-30 23:18:49.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:49.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:49.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:49.342][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:49.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:49.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:49.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:49.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.366][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:49.368][private$selectFields]
biodb.TRACE[2024-12-30 23:18:49.370][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-30 23:18:49.372][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-30 23:18:49.374][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:49.376][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.378][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.381][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.383][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.385][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.389][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.391][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:49.393][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:49.395][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.397][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.401][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.403][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-30 23:18:49.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.421][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-12-30 23:18:49.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:49.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:49.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:49.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:49.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:49.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:49.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:49.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.459][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:49.461][private$selectFields]
biodb.TRACE[2024-12-30 23:18:49.463][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-30 23:18:49.465][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-30 23:18:49.466][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:49.468][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.471][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.474][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.476][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.479][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.482][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.484][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:49.486][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:49.488][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.490][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.494][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.496][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-30 23:18:49.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:49.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.523][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-12-30 23:18:49.525][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-30 23:18:49.527][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-30 23:18:49.549][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:49.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:49.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:49.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:49.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:49.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:49.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.574][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:49.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:49.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:49.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:49.681][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:49.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:49.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:49.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:49.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:49.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:49.709][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-30 23:18:49.716][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-30 23:18:49.718][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-12-30 23:18:49.721][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:49.759][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-12-30 23:18:49.764][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-30 23:18:49.771][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-30 23:18:49.774][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-12-30 23:18:49.777][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:49.795][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-12-30 23:18:49.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:49.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:49.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:49.808][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:49.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:49.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:49.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:49.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:49.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:49.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:49.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:49.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:49.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:49.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:49.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:49.832][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:49.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:49.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:49.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:49.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:49.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:49.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:49.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:49.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:49.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:49.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:49.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:49.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:49.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:49.878][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:49.880][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:49.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:49.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:49.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:49.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:49.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:49.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:49.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:49.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:49.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:49.917][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:49.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:49.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:49.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:49.961][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-30 23:18:49.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:50.000][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:50.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:50.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:50.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:50.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:50.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:50.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.034][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:50.036][private$selectFields]
biodb.TRACE[2024-12-30 23:18:50.038][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-30 23:18:50.040][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-30 23:18:50.042][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:50.044][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.046][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.050][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.052][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.054][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.058][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.060][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:50.062][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:50.064][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.066][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.069][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.070][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-30 23:18:50.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.097][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-12-30 23:18:50.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:50.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:50.102][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:50.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:50.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:50.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:50.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:50.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.177][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:50.179][private$selectFields]
biodb.TRACE[2024-12-30 23:18:50.181][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-30 23:18:50.184][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-30 23:18:50.186][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:50.188][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.190][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.194][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.196][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.199][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.202][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.203][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:50.217][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:50.219][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.221][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.225][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.227][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-30 23:18:50.229][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.246][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-12-30 23:18:50.247][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:50.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:50.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:50.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:50.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:50.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:50.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:50.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.290][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:50.292][private$selectFields]
biodb.TRACE[2024-12-30 23:18:50.294][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-30 23:18:50.295][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-30 23:18:50.297][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:50.299][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.301][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.304][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.306][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.307][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.310][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.312][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:50.313][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:50.315][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.316][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.319][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.321][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-30 23:18:50.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.347][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-12-30 23:18:50.349][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-30 23:18:50.351][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-30 23:18:50.370][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-30 23:18:50.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-30 23:18:50.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-30 23:18:50.390][biodb::testThat]
biodb.INFO [2024-12-30 23:18:50.392][biodb::testThat] Running test function test_annotateMzValues_ppm_tol (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2024-12-30 23:18:50.393][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-30 23:18:50.395][biodb::testThat]
biodb.TRACE[2024-12-30 23:18:50.401][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-30 23:18:50.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-30 23:18:50.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:50.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:50.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:50.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:50.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:50.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:50.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:50.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:50.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:50.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:50.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:50.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:50.454][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:50.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:50.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:50.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:50.465][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-30 23:18:50.470][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-30 23:18:50.473][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-12-30 23:18:50.475][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:50.478][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-12-30 23:18:50.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:50.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:50.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:50.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:50.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:50.504][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:50.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:50.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:50.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:50.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:50.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:50.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:50.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:50.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:50.532][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-30 23:18:50.537][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-30 23:18:50.540][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-12-30 23:18:50.542][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:50.546][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-12-30 23:18:50.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:50.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:50.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:50.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:50.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:50.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:50.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:50.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:50.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:50.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.582][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:50.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:50.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:50.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:50.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:50.599][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:50.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:50.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:50.613][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:50.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:50.616][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:50.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:50.619][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:50.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:50.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.625][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:50.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:50.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:50.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:50.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:50.641][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-30 23:18:50.644][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:50.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:50.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:50.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:50.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:50.667][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:50.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:50.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.687][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:50.689][private$selectFields]
biodb.TRACE[2024-12-30 23:18:50.691][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-30 23:18:50.692][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-30 23:18:50.694][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:50.696][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.698][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.701][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.702][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.704][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.706][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.707][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:50.709][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:50.710][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.711][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.713][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.715][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-30 23:18:50.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.732][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-12-30 23:18:50.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:50.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:50.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:50.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:50.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:50.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:50.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:50.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.779][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:50.781][private$selectFields]
biodb.TRACE[2024-12-30 23:18:50.783][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-30 23:18:50.785][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-30 23:18:50.786][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:50.788][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.791][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.794][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.795][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.797][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.799][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.800][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:50.801][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:50.803][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.804][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.806][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.807][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-30 23:18:50.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.814][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.825][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-12-30 23:18:50.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:50.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:50.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:50.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:50.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:50.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:50.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:50.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.866][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:50.868][private$selectFields]
biodb.TRACE[2024-12-30 23:18:50.870][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-30 23:18:50.871][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-30 23:18:50.873][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:50.875][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.877][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.881][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.883][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.885][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.889][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.891][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:50.893][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:50.895][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.897][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.901][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.903][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-30 23:18:50.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:50.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.929][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-12-30 23:18:50.931][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-30 23:18:50.933][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-30 23:18:50.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:50.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:50.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.983][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:50.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:50.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:50.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:50.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:50.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:50.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:50.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:50.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:51.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:51.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:51.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:51.020][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:51.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:51.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:51.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:51.032][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-30 23:18:51.038][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-30 23:18:51.040][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-12-30 23:18:51.043][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:51.046][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-12-30 23:18:51.052][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-30 23:18:51.058][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-30 23:18:51.061][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-12-30 23:18:51.064][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:51.067][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-12-30 23:18:51.072][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:51.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:51.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:51.090][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:51.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:51.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:51.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:51.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:51.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:51.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:51.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:51.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:51.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:51.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:51.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:51.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:51.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:51.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:51.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:51.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:51.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:51.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:51.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:51.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.145][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:51.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:51.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:51.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:51.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:51.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:51.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:51.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:51.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:51.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:51.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:51.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:51.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:51.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:51.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:51.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:51.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:51.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:51.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:51.193][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-30 23:18:51.195][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:51.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:51.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:51.224][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:51.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:51.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:51.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:51.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.243][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:51.244][private$selectFields]
biodb.TRACE[2024-12-30 23:18:51.245][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-30 23:18:51.247][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-30 23:18:51.248][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:51.251][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.253][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.256][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.259][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.261][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.265][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.267][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:51.268][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:51.270][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.272][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.276][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.278][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-30 23:18:51.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.307][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-12-30 23:18:51.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:51.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:51.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:51.337][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:51.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:51.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:51.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:51.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.355][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.360][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:51.362][private$selectFields]
biodb.TRACE[2024-12-30 23:18:51.363][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-30 23:18:51.364][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-30 23:18:51.365][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:51.368][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.370][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.373][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.375][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.377][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.381][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.383][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:51.385][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:51.387][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.390][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.393][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.395][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-30 23:18:51.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.415][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-12-30 23:18:51.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:51.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:51.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:51.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:51.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:51.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:51.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:51.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.460][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:51.462][private$selectFields]
biodb.TRACE[2024-12-30 23:18:51.464][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-30 23:18:51.467][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-30 23:18:51.469][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:51.471][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.473][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.477][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.479][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.482][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.486][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.488][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:51.489][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:51.490][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.492][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.494][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.496][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-30 23:18:51.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.519][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-12-30 23:18:51.521][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-30 23:18:51.523][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-30 23:18:51.548][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-30 23:18:51.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-30 23:18:51.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-30 23:18:51.564][biodb::testThat]
biodb.INFO [2024-12-30 23:18:51.566][biodb::testThat] Running test function test_annotateMzValues_input_dataframe_untouched (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2024-12-30 23:18:51.568][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-30 23:18:51.570][biodb::testThat]
biodb.TRACE[2024-12-30 23:18:51.577][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-30 23:18:51.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-30 23:18:51.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.586][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:51.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:51.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:51.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:51.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:51.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:51.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:51.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:51.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:51.617][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:51.618][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:51.619][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:51.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:51.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:51.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:51.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:51.634][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-30 23:18:51.637][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-30 23:18:51.640][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-12-30 23:18:51.643][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:51.645][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-12-30 23:18:51.649][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:51.650][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:51.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:51.673][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:51.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:51.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:51.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:51.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:51.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:51.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:51.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:51.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:51.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:51.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:51.700][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-30 23:18:51.705][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-30 23:18:51.708][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-12-30 23:18:51.711][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:51.714][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-12-30 23:18:51.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:51.720][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:51.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:51.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:51.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:51.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:51.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:51.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:51.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:51.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:51.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:51.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:51.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:51.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:51.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:51.768][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:51.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:51.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:51.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:51.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:51.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:51.794][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:51.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:51.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.804][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:51.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:51.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:51.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:51.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:51.820][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-30 23:18:51.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:51.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:51.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:51.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:51.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:51.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:51.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:51.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.859][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:51.860][private$selectFields]
biodb.TRACE[2024-12-30 23:18:51.862][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-30 23:18:51.863][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-30 23:18:51.865][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:51.866][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.867][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.870][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.871][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.872][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.875][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.877][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:51.879][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:51.880][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.882][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.886][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.888][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-30 23:18:51.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.913][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-12-30 23:18:51.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:51.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:51.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:51.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:51.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:51.934][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:51.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:51.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.955][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:51.957][private$selectFields]
biodb.TRACE[2024-12-30 23:18:51.959][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-30 23:18:51.961][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-30 23:18:51.963][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:51.965][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.967][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.971][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.973][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.975][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.978][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.980][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:51.982][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:51.984][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.987][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.990][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.992][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-30 23:18:51.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:51.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:51.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:51.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.012][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-12-30 23:18:52.014][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:52.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:52.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:52.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:52.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:52.036][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:52.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:52.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.052][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:52.054][private$selectFields]
biodb.TRACE[2024-12-30 23:18:52.056][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-30 23:18:52.058][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-30 23:18:52.060][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:52.062][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.064][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.068][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.070][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.071][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.075][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.077][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:52.079][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:52.080][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.082][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.086][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.088][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-30 23:18:52.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.110][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-12-30 23:18:52.112][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-30 23:18:52.113][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-30 23:18:52.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:52.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:52.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:52.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:52.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.176][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:52.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:52.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:52.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:52.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:52.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:52.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:52.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:52.209][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:52.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:52.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:52.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:52.216][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-30 23:18:52.220][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-30 23:18:52.222][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-12-30 23:18:52.223][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:52.226][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-12-30 23:18:52.230][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-30 23:18:52.234][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-30 23:18:52.235][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-12-30 23:18:52.238][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:52.241][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-12-30 23:18:52.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:52.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:52.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:52.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:52.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:52.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:52.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:52.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:52.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:52.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:52.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:52.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:52.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:52.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:52.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:52.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:52.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:52.308][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:52.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:52.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:52.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:52.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:52.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:52.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:52.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:52.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:52.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:52.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:52.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:52.343][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:52.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:52.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:52.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:52.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:52.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:52.382][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:52.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:52.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:52.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:52.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.398][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:52.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:52.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:52.405][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-30 23:18:52.408][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:52.410][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:52.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:52.422][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:52.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:52.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:52.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:52.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.446][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:52.447][private$selectFields]
biodb.TRACE[2024-12-30 23:18:52.449][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-30 23:18:52.451][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-30 23:18:52.453][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:52.455][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.457][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.461][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.463][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.465][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.468][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.470][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:52.472][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:52.474][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.476][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.479][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.481][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-30 23:18:52.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.507][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-12-30 23:18:52.509][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:52.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:52.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:52.541][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:52.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:52.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:52.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:52.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.556][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:52.557][private$selectFields]
biodb.TRACE[2024-12-30 23:18:52.559][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-30 23:18:52.560][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-30 23:18:52.561][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:52.562][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.563][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.566][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.567][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.568][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.571][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.572][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:52.573][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:52.574][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.575][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.578][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.579][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-30 23:18:52.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.595][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-12-30 23:18:52.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:52.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:52.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:52.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:52.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:52.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:52.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:52.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.621][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:52.622][private$selectFields]
biodb.TRACE[2024-12-30 23:18:52.623][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-30 23:18:52.624][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-30 23:18:52.625][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:52.626][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.628][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.630][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.631][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.633][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.635][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.636][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:52.637][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-30 23:18:52.638][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.640][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.642][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.643][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-30 23:18:52.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:52.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:52.659][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-12-30 23:18:52.661][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-30 23:18:52.662][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-30 23:18:52.688][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-30 23:18:52.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-30 23:18:52.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:52.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-30 23:18:52.699][biodb::testThat]
biodb.INFO [2024-12-30 23:18:52.700][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2024-12-30 23:18:52.702][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-30 23:18:52.703][biodb::testThat]
biodb.DEBUG[2024-12-30 23:18:52.705][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2024-12-30 23:18:52.706][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-30 23:18:52.708][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2024-12-30 23:18:52.711][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:53.094][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGA.xml".
biodb.DEBUG[2024-12-30 23:18:53.096][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-30 23:18:53.097][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-30 23:18:53.099][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-30 23:18:53.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:53.104][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:53.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:53.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:53.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:53.121][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:53.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:53.127][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:53.130][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:53.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:53.134][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:53.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:53.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:53.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:53.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:53.144][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:53.146][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:53.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:53.150][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:53.152][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:53.154][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:53.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:53.158][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:53.161][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:53.163][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:53.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:53.166][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:53.169][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:53.171][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:53.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:53.175][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:53.177][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:53.178][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:53.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:53.181][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:53.182][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:53.184][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:53.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:53.186][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:53.187][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:53.189][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:53.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:53.191][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:53.193][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:53.194][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:53.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:53.196][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:53.198][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:53.199][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:53.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:53.201][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:53.203][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:53.204][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:53.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:53.207][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:53.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:53.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:53.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:53.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:53.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:53.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:53.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:53.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:53.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:53.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:53.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:53.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:53.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:53.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:53.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:53.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:53.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:53.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:53.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:53.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:53.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:53.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:53.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:53.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:53.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:53.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:53.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:53.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:53.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:53.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:53.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:53.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:53.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:53.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:53.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:53.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:53.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:53.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:53.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:53.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:53.258][self$createEntryFromContent] Accession numbers: .
biodb.DEBUG[2024-12-30 23:18:53.259][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2024-12-30 23:18:53.276][biodb::testThat]
biodb.INFO [2024-12-30 23:18:53.278][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2024-12-30 23:18:53.280][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-30 23:18:53.282][biodb::testThat]
biodb.DEBUG[2024-12-30 23:18:53.308][function(conn, opt)] IDS: [4]: "WRONGB, 15440, 2528, 7799"
biodb.DEBUG[2024-12-30 23:18:53.310][private$loadEntries] Creating entries from ids [3]: "WRONGB, 2528, 7799".
biodb.DEBUG[2024-12-30 23:18:53.313][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2024-12-30 23:18:53.316][cch$loadFileContent] Trying to load 3 files from cache: [3]: "WRONGB, 2528, 7799".
biodb.TRACE[2024-12-30 23:18:53.320][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2024-12-30 23:18:54.083][loadFileContents] Loaded 3 files from cache: [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGB.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2024-12-30 23:18:54.085][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-30 23:18:54.087][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2024-12-30 23:18:54.089][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2024-12-30 23:18:54.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:54.093][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:54.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:54.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:54.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:54.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:54.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:54.108][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:54.109][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:54.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.112][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:54.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:54.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.118][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:54.119][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:54.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.122][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.123][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:54.124][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:54.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.127][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.128][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:54.130][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:54.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.132][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.134][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:54.135][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:54.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.137][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.139][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:54.140][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:54.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.142][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.144][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:54.145][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:54.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.148][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.150][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:54.151][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:54.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.154][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.156][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:54.157][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:54.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.160][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.162][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:54.164][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:54.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.166][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.168][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:54.169][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:54.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.171][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:54.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:54.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:54.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:54.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:54.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:54.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:54.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:54.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:54.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:54.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:54.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:54.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:54.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:54.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:54.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:54.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:54.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:54.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:54.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:54.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:54.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:54.224][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:54.225][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:54.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.228][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:54.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:54.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.238][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:54.240][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:54.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.243][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.246][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:54.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:54.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.254][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:54.256][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:54.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.259][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.262][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:54.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:54.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.270][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:54.272][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:54.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.276][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.279][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:54.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:54.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.287][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:54.289][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:54.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.293][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.295][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:54.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:54.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.303][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:54.305][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:54.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.309][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.312][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:54.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:54.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.320][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:54.322][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:54.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.326][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.329][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:54.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:54.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.337][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:54.339][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:54.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.343][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:54.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:54.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.355][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:54.357][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:54.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.361][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.364][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:54.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:54.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.372][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:54.374][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:54.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.376][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.378][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:54.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:54.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.384][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:54.385][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:54.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.388][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.390][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:54.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:54.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:54.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:54.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:54.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:54.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:54.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:54.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:54.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:54.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:54.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:54.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:54.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:54.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:54.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:54.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:54.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:54.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:54.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:54.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:54.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:54.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:54.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:18:54.470][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:54.471][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:54.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.474][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:54.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:54.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.480][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:54.482][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:54.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.484][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.485][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:18:54.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:18:54.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.490][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:54.492][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:54.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.494][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.496][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:18:54.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:18:54.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.501][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:54.502][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:54.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.504][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.506][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:18:54.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:18:54.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.511][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:54.512][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:54.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.515][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.516][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:18:54.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:18:54.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.521][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:54.522][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:54.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.525][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.526][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:54.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:18:54.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.531][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:54.533][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:54.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.535][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.537][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:18:54.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:18:54.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.542][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:54.543][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:54.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.546][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.549][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:54.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:54.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.556][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:54.558][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:54.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.562][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.565][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:54.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:54.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.573][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:54.575][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:54.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.579][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.581][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:18:54.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:18:54.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.590][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:54.591][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:54.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.594][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.596][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:18:54.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:18:54.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:54.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:54.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:54.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:54.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:54.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:54.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:18:54.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:18:54.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:54.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:54.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:54.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:54.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:54.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:54.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:54.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:54.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:54.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:54.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:54.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:54.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:54.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:54.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:54.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:54.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:54.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:54.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:54.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:54.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:54.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:54.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:18:54.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:18:54.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:18:54.719][self$createEntryFromContent] Accession numbers: , 2528, 7799.
biodb.DEBUG[2024-12-30 23:18:54.720][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2024-12-30 23:18:54.722][function(conn, opt)] Entries: [4]: "NULL, <environment>, <environment>, <environment>"
biodb.INFO [2024-12-30 23:18:54.768][biodb::testThat]
biodb.INFO [2024-12-30 23:18:54.770][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2024-12-30 23:18:54.772][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-30 23:18:54.774][biodb::testThat]
biodb.INFO [2024-12-30 23:18:54.818][biodb::testThat]
biodb.INFO [2024-12-30 23:18:54.820][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2024-12-30 23:18:54.821][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-30 23:18:54.823][biodb::testThat]
biodb.INFO [2024-12-30 23:18:54.839][biodb::testThat]
biodb.INFO [2024-12-30 23:18:54.841][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2024-12-30 23:18:54.842][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-30 23:18:54.844][biodb::testThat]
biodb.DEBUG[2024-12-30 23:18:54.849][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1*&searchCategory=CHEBI ID&maximumResults=100&starsCategory=ALL".
biodb.DEBUG[2024-12-30 23:18:54.855][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-30 23:18:54.857][cch$loadFileContent] Trying to load 1 files from cache: [1]: "aed2cd6d5d221333c0a30a9f8dbc41b4".
biodb.TRACE[2024-12-30 23:18:54.859][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:54.932][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aed2cd6d5d221333c0a30a9f8dbc41b4.content".
biodb.TRACE[2024-12-30 23:18:54.948][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:18:54.950][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:18:54.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.953][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:18:54.955][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:54.957][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:18:54.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:18:54.959][ef$get] fields variable is a list.
biodb.INFO [2024-12-30 23:18:54.962][biodb::testThat]
biodb.INFO [2024-12-30 23:18:54.963][biodb::testThat] Running test function test.annotateMzValues (" annotateMzValues() works correctly. ").
biodb.INFO [2024-12-30 23:18:54.964][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-30 23:18:54.965][biodb::testThat]
biodb.ERROR[2024-12-30 23:18:54.991][conn$annotateMzValues] No column named "mz" was found inside data frame.
biodb.ERROR[2024-12-30 23:18:55.009][ef$checkIsDefined] Field(s) "foo" is/are not defined.
biodb.INFO [2024-12-30 23:18:55.035][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-12-30 23:18:55.037][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-12-30 23:18:55.038][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-12-30 23:18:55.039][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-12-30 23:18:55.040][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:55.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:55.043][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:55.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:55.045][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-12-30 23:18:55.059][biodb::testContext]
biodb.INFO [2024-12-30 23:18:55.060][biodb::testContext] ********************************************************************************
biodb.INFO [2024-12-30 23:18:55.062][biodb::testContext] Test context - Test conversions
biodb.INFO [2024-12-30 23:18:55.063][biodb::testContext] ********************************************************************************
biodb.INFO [2024-12-30 23:18:55.064][biodb::testContext]
biodb.INFO [2024-12-30 23:18:55.067][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-12-30 23:18:55.070][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-12-30 23:18:55.076][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-30 23:18:55.079][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-12-30 23:18:55.081][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-12-30 23:18:55.083][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.088][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-12-30 23:18:55.090][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-12-30 23:18:55.092][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.098][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-12-30 23:18:55.100][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-12-30 23:18:55.101][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.107][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-12-30 23:18:55.109][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-12-30 23:18:55.111][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-12-30 23:18:55.112][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.114][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.118][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-12-30 23:18:55.120][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-12-30 23:18:55.122][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-12-30 23:18:55.123][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.129][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-12-30 23:18:55.131][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-12-30 23:18:55.133][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.134][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.138][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-12-30 23:18:55.140][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-12-30 23:18:55.142][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-12-30 23:18:55.144][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.145][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.149][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-12-30 23:18:55.151][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-12-30 23:18:55.153][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.158][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-12-30 23:18:55.160][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-12-30 23:18:55.162][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-12-30 23:18:55.164][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.165][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.169][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-12-30 23:18:55.171][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-12-30 23:18:55.173][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-12-30 23:18:55.175][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-12-30 23:18:55.177][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-12-30 23:18:55.179][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-12-30 23:18:55.181][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.187][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-12-30 23:18:55.189][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-12-30 23:18:55.191][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.192][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.196][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-12-30 23:18:55.198][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-12-30 23:18:55.200][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.206][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-12-30 23:18:55.208][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-12-30 23:18:55.209][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.211][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.215][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-12-30 23:18:55.217][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-12-30 23:18:55.219][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.224][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-12-30 23:18:55.226][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-12-30 23:18:55.228][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.234][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-12-30 23:18:55.235][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-12-30 23:18:55.239][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-12-30 23:18:55.240][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.243][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-12-30 23:18:55.244][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-12-30 23:18:55.246][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-12-30 23:18:55.247][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.251][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-12-30 23:18:55.253][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-30 23:18:55.254][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-12-30 23:18:55.255][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:55.256][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-30 23:18:55.258][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:55.259][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-30 23:18:55.260][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-30 23:18:55.261][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-30 23:18:55.263][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-12-30 23:18:55.264][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-30 23:18:55.265][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:55.266][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-12-30 23:18:55.268][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-30 23:18:55.269][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:18:55.270][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:55.271][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-30 23:18:55.271][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-30 23:18:55.271][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-30 23:18:55.271][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-12-30 23:18:55.271][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-12-30 23:18:55.273][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-30 23:18:55.274][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-30 23:18:55.275][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-30 23:18:55.276][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-30 23:18:55.277][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-30 23:18:55.278][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-30 23:18:55.280][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-30 23:18:55.281][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:18:55.282][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-30 23:18:55.283][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-30 23:18:55.285][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-30 23:18:55.286][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:18:55.287][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-12-30 23:18:55.289][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-30 23:18:55.291][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-12-30 23:18:55.292][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:55.293][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-30 23:18:55.295][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:55.296][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-30 23:18:55.297][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-30 23:18:55.299][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-30 23:18:55.300][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-12-30 23:18:55.302][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-30 23:18:55.310][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:55.312][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-12-30 23:18:55.313][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-30 23:18:55.314][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:18:55.316][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:55.317][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-30 23:18:55.317][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-30 23:18:55.317][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-30 23:18:55.317][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-12-30 23:18:55.317][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-12-30 23:18:55.318][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-30 23:18:55.319][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-30 23:18:55.321][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-30 23:18:55.322][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-30 23:18:55.323][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-30 23:18:55.324][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-30 23:18:55.325][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-30 23:18:55.326][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:18:55.328][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-30 23:18:55.329][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-30 23:18:55.330][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-30 23:18:55.332][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:18:55.334][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-12-30 23:18:55.336][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:55.337][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-12-30 23:18:55.338][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:55.339][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-30 23:18:55.341][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:55.342][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-30 23:18:55.343][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-30 23:18:55.344][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-30 23:18:55.346][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-12-30 23:18:55.348][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-30 23:18:55.350][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-12-30 23:18:55.351][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-12-30 23:18:55.353][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-30 23:18:55.355][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:18:55.357][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:55.358][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:18:55.359][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-30 23:18:55.360][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-30 23:18:55.361][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-30 23:18:55.363][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-30 23:18:55.364][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-30 23:18:55.365][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-30 23:18:55.366][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-30 23:18:55.367][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:18:55.368][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-30 23:18:55.369][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-30 23:18:55.371][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-30 23:18:55.372][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:18:55.373][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-12-30 23:18:55.375][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:55.377][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-12-30 23:18:55.378][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:55.379][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-30 23:18:55.380][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:55.381][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-30 23:18:55.383][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-30 23:18:55.384][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-30 23:18:55.385][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-12-30 23:18:55.386][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-30 23:18:55.388][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-12-30 23:18:55.389][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-12-30 23:18:55.390][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-30 23:18:55.391][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:18:55.392][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:55.394][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:18:55.395][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-30 23:18:55.396][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-30 23:18:55.397][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-30 23:18:55.398][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-30 23:18:55.399][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-30 23:18:55.401][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-30 23:18:55.402][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-30 23:18:55.403][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:18:55.404][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-30 23:18:55.405][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-30 23:18:55.406][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-30 23:18:55.408][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:18:55.409][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-30 23:18:55.410][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.412][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:55.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:55.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.418][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:55.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:55.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.423][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:55.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:55.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.429][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:55.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:55.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.434][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:55.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:55.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.440][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:55.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:55.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.446][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:55.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:55.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.451][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:55.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:55.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.457][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:55.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:55.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.464][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:55.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:55.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.470][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:55.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:55.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.478][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:55.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:55.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.487][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:55.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:55.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.496][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:55.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:55.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.502][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:55.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:55.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.508][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:55.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:55.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.513][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:55.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:55.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.519][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-12-30 23:18:55.521][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-12-30 23:18:55.522][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-12-30 23:18:55.524][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-12-30 23:18:55.526][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-12-30 23:18:55.527][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-12-30 23:18:55.529][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-12-30 23:18:55.530][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-12-30 23:18:55.532][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-12-30 23:18:55.534][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-12-30 23:18:55.535][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-12-30 23:18:55.537][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-12-30 23:18:55.538][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-12-30 23:18:55.540][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-12-30 23:18:55.541][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-12-30 23:18:55.543][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-12-30 23:18:55.545][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-12-30 23:18:55.546][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-12-30 23:18:55.548][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-12-30 23:18:55.550][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-12-30 23:18:55.551][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-12-30 23:18:55.553][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-12-30 23:18:55.555][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-12-30 23:18:55.556][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-12-30 23:18:55.558][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-12-30 23:18:55.560][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-12-30 23:18:55.562][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-12-30 23:18:55.563][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-12-30 23:18:55.565][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-12-30 23:18:55.567][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-12-30 23:18:55.568][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-12-30 23:18:55.570][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-12-30 23:18:55.572][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-12-30 23:18:55.573][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-12-30 23:18:55.575][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-12-30 23:18:55.576][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-12-30 23:18:55.578][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-12-30 23:18:55.580][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-12-30 23:18:55.581][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-12-30 23:18:55.583][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-12-30 23:18:55.584][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-12-30 23:18:55.587][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-12-30 23:18:55.589][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-12-30 23:18:55.592][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-12-30 23:18:55.594][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-12-30 23:18:55.597][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-12-30 23:18:55.598][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-12-30 23:18:55.600][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-12-30 23:18:55.602][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-12-30 23:18:55.603][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-12-30 23:18:55.605][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-12-30 23:18:55.607][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-12-30 23:18:55.608][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-12-30 23:18:55.610][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-12-30 23:18:55.612][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-12-30 23:18:55.614][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-12-30 23:18:55.616][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-12-30 23:18:55.617][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-12-30 23:18:55.619][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-12-30 23:18:55.621][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-12-30 23:18:55.622][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-12-30 23:18:55.624][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-12-30 23:18:55.626][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-12-30 23:18:55.627][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-12-30 23:18:55.629][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-12-30 23:18:55.631][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-12-30 23:18:55.632][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-12-30 23:18:55.634][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-12-30 23:18:55.636][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-12-30 23:18:55.638][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-12-30 23:18:55.639][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-12-30 23:18:55.641][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-12-30 23:18:55.643][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-12-30 23:18:55.645][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-12-30 23:18:55.647][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-12-30 23:18:55.648][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-12-30 23:18:55.650][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-12-30 23:18:55.652][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-12-30 23:18:55.653][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-12-30 23:18:55.655][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-12-30 23:18:55.657][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-12-30 23:18:55.659][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-12-30 23:18:55.661][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-12-30 23:18:55.663][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-12-30 23:18:55.665][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2024-12-30 23:18:55.667][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-30 23:18:55.668][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:55.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:55.670][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.672][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:55.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:55.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:55.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:55.678][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.681][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:55.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:55.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:55.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:55.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.688][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:55.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:55.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:55.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:55.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.696][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:55.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:55.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:55.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:55.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.704][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:55.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:55.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:55.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:55.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.716][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:55.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:55.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:55.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:55.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.729][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:55.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:55.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:55.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:55.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.741][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:55.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:55.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:55.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:55.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.764][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:55.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:55.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:55.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:55.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.777][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:55.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:55.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:55.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:55.786][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.789][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:55.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:55.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:55.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:55.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.801][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.803][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:55.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:55.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:55.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:55.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.813][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:55.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:55.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:55.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:55.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.825][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:55.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:55.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:55.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:55.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.837][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:55.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:55.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:55.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:55.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.846][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:55.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:55.849][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:55.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:55.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.854][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:18:55.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:55.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:55.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:55.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:55.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:55.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:55.863][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-12-30 23:18:55.873][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-12-30 23:18:55.875][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-30 23:18:55.877][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-12-30 23:18:55.878][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:55.879][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-30 23:18:55.880][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:55.882][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-30 23:18:55.883][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:55.884][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-12-30 23:18:55.885][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-12-30 23:18:55.886][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-30 23:18:55.888][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:55.889][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-12-30 23:18:55.890][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-30 23:18:55.891][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-12-30 23:18:55.891][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-12-30 23:18:55.891][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-12-30 23:18:55.891][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-12-30 23:18:55.891][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-12-30 23:18:55.891][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-12-30 23:18:55.891][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-12-30 23:18:55.891][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-12-30 23:18:55.891][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-12-30 23:18:55.891][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-12-30 23:18:55.891][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-12-30 23:18:55.893][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-30 23:18:55.894][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-30 23:18:55.894][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-30 23:18:55.894][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-30 23:18:55.895][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-12-30 23:18:55.896][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-30 23:18:55.897][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-30 23:18:55.899][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-30 23:18:55.900][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-30 23:18:55.901][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-30 23:18:55.902][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-30 23:18:55.903][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-30 23:18:55.903][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-12-30 23:18:55.904][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-30 23:18:55.905][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-30 23:18:55.907][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-30 23:18:55.908][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-12-30 23:18:55.908][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-12-30 23:18:55.909][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-12-30 23:18:55.911][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-12-30 23:18:55.913][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-12-30 23:18:55.915][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-12-30 23:18:55.916][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-12-30 23:18:55.918][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-12-30 23:18:55.922][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-12-30 23:18:55.923][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-12-30 23:18:55.924][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-12-30 23:18:55.926][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-12-30 23:18:55.928][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-30 23:18:55.929][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-30 23:18:55.931][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-12-30 23:18:55.932][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-12-30 23:18:55.934][biodb::testThat]
biodb.INFO [2024-12-30 23:18:55.935][biodb::testThat] Running test function test_chebi_convCasToChebi (" convCasToChebi() works. ").
biodb.INFO [2024-12-30 23:18:55.936][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-30 23:18:55.937][biodb::testThat]
biodb.DEBUG[2024-12-30 23:18:55.942][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-12-30 23:18:55.947][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-30 23:18:55.948][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-12-30 23:18:55.950][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:55.953][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-12-30 23:18:55.957][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-12-30 23:18:55.961][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-30 23:18:55.962][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2024-12-30 23:18:55.964][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:57.031][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2024-12-30 23:18:57.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:57.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:57.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:57.057][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:57.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:57.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:57.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:57.067][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-12-30 23:18:57.074][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-30 23:18:57.077][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2024-12-30 23:18:57.079][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:57.225][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2024-12-30 23:18:57.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:57.229][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:57.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:57.240][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:57.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:57.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:57.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:57.273][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:57.275][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:57.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:57.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:57.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:57.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:57.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:57.304][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-12-30 23:18:57.311][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-30 23:18:57.312][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-30 23:18:57.314][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY%20NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.TRACE[2024-12-30 23:18:57.654][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY%20NUMBERS&maximumResults=10&starsCategory=ALL).
biodb.DEBUG[2024-12-30 23:18:57.994][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.INFO [2024-12-30 23:18:57.997][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649" for "chebi-0c5076ac2a43d16dbce503a44b09f649".
biodb.TRACE[2024-12-30 23:18:57.999][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content"
biodb.TRACE[2024-12-30 23:18:58.019][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.request"
biodb.DEBUG[2024-12-30 23:18:58.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:58.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:58.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:58.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:58.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:58.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:58.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:58.046][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-12-30 23:18:58.063][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-30 23:18:58.065][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-30 23:18:58.080][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY%20NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.TRACE[2024-12-30 23:18:58.406][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY%20NUMBERS&maximumResults=10&starsCategory=ALL).
biodb.DEBUG[2024-12-30 23:18:58.731][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-30 23:18:58.734][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content"
biodb.TRACE[2024-12-30 23:18:58.869][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.request"
biodb.DEBUG[2024-12-30 23:18:58.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:58.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:58.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:58.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:58.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:58.892][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:58.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:58.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:58.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:58.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:58.910][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:58.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:58.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:58.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:58.920][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-12-30 23:18:58.924][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-30 23:18:58.926][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2024-12-30 23:18:58.929][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:58.932][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2024-12-30 23:18:58.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:58.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:58.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:58.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:58.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:58.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:58.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:58.974][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-12-30 23:18:58.980][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-30 23:18:58.983][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2024-12-30 23:18:58.985][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:18:59.002][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2024-12-30 23:18:59.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:59.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:59.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:59.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:59.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:59.017][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:59.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:18:59.021][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=14215-68-0&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-12-30 23:18:59.025][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-30 23:18:59.026][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-30 23:18:59.028][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=14215-68-0&searchCategory=REGISTRY%20NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.TRACE[2024-12-30 23:18:59.356][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=14215-68-0&searchCategory=REGISTRY%20NUMBERS&maximumResults=10&starsCategory=ALL).
biodb.DEBUG[2024-12-30 23:18:59.692][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-30 23:18:59.696][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70e3912746e7e39b39fbbffe6c90b502.content"
biodb.TRACE[2024-12-30 23:18:59.703][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70e3912746e7e39b39fbbffe6c90b502.request"
biodb.DEBUG[2024-12-30 23:18:59.707][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:18:59.710][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:18:59.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:18:59.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:18:59.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:18:59.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:18:59.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-12-30 23:18:59.748][biodb::testThat]
biodb.INFO [2024-12-30 23:18:59.750][biodb::testThat] Running test function test_chebi_convInchiToChebi (" convInchiToChebi() works. ").
biodb.INFO [2024-12-30 23:18:59.752][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-30 23:18:59.754][biodb::testThat]
biodb.DEBUG[2024-12-30 23:18:59.760][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI=1S/C15H24/c1-9(2)11-7-8-15(4)12-6-5-10(3)14(15)13(11)12/h5,9,11-14H,6-8H2,1-4H3/t11?,12?,13?,14?,15-/m0/s1&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-12-30 23:18:59.767][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-30 23:18:59.769][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-30 23:18:59.773][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI%3D1S%2FC15H24%2Fc1-9%282%2911-7-8-15%284%2912-6-5-10%283%2914%2815%2913%2811%2912%2Fh5%2C9%2C11-14H%2C6-8H2%2C1-4H3%2Ft11%3F%2C12%3F%2C13%3F%2C14%3F%2C15-%2Fm0%2Fs1&searchCategory=INCHI%2FINCHI%20KEY&maximumResults=10&starsCategory=ALL".
biodb.TRACE[2024-12-30 23:19:00.225][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI%3D1S%2FC15H24%2Fc1-9%282%2911-7-8-15%284%2912-6-5-10%283%2914%2815%2913%2811%2912%2Fh5%2C9%2C11-14H%2C6-8H2%2C1-4H3%2Ft11%3F%2C12%3F%2C13%3F%2C14%3F%2C15-%2Fm0%2Fs1&searchCategory=INCHI%2FINCHI%20KEY&maximumResults=10&starsCategory=ALL).
biodb.DEBUG[2024-12-30 23:19:00.577][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-30 23:19:00.583][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64007787a4f3864bb479683766386808.content"
biodb.TRACE[2024-12-30 23:19:00.588][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64007787a4f3864bb479683766386808.request"
biodb.DEBUG[2024-12-30 23:19:00.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:19:00.593][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:00.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:00.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:00.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:00.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:00.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:00.624][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-12-30 23:19:00.628][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-30 23:19:00.629][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-30 23:19:00.632][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI%2FINCHI%20KEY&maximumResults=10&starsCategory=ALL".
biodb.TRACE[2024-12-30 23:19:00.964][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI%2FINCHI%20KEY&maximumResults=10&starsCategory=ALL).
biodb.DEBUG[2024-12-30 23:19:01.285][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-30 23:19:01.288][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7547b08b3ebd50447d61026ab0af8d63.content"
biodb.TRACE[2024-12-30 23:19:01.293][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7547b08b3ebd50447d61026ab0af8d63.request"
biodb.DEBUG[2024-12-30 23:19:01.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:19:01.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:01.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:01.316][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:01.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:01.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:01.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-12-30 23:19:01.327][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-12-30 23:19:01.329][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-12-30 23:19:01.330][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-12-30 23:19:01.331][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-12-30 23:19:01.332][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:01.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:01.335][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:01.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:01.337][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:01.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-12-30 23:19:01.345][biodb::testContext]
biodb.INFO [2024-12-30 23:19:01.347][biodb::testContext] ********************************************************************************
biodb.INFO [2024-12-30 23:19:01.349][biodb::testContext] Test context - Test web services
biodb.INFO [2024-12-30 23:19:01.351][biodb::testContext] ********************************************************************************
biodb.INFO [2024-12-30 23:19:01.352][biodb::testContext]
biodb.INFO [2024-12-30 23:19:01.357][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-12-30 23:19:01.360][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-12-30 23:19:01.369][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-30 23:19:01.372][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-12-30 23:19:01.374][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-12-30 23:19:01.376][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:01.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:01.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:01.381][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-12-30 23:19:01.382][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-12-30 23:19:01.383][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:01.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:01.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:01.387][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-12-30 23:19:01.388][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-12-30 23:19:01.389][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:01.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:01.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:01.392][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-12-30 23:19:01.394][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-12-30 23:19:01.395][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-12-30 23:19:01.396][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:01.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:01.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:01.399][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-12-30 23:19:01.400][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-12-30 23:19:01.402][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-12-30 23:19:01.403][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:01.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:01.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:01.406][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-12-30 23:19:01.408][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-12-30 23:19:01.409][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:01.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:01.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:01.412][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-12-30 23:19:01.413][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-12-30 23:19:01.415][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-12-30 23:19:01.416][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:01.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:01.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:01.420][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-12-30 23:19:01.421][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-12-30 23:19:01.422][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:01.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:01.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:01.425][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-12-30 23:19:01.427][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-12-30 23:19:01.428][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-12-30 23:19:01.429][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:01.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:01.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:01.432][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-12-30 23:19:01.434][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-12-30 23:19:01.435][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-12-30 23:19:01.436][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-12-30 23:19:01.437][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-12-30 23:19:01.438][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-12-30 23:19:01.440][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:01.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:01.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:01.443][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-12-30 23:19:01.444][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-12-30 23:19:01.445][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:01.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:01.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:01.449][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-12-30 23:19:01.450][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-12-30 23:19:01.451][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:01.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:01.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:01.454][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-12-30 23:19:01.455][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-12-30 23:19:01.457][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:01.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:01.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:01.460][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-12-30 23:19:01.461][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-12-30 23:19:01.463][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:01.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:01.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:01.466][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-12-30 23:19:01.467][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-12-30 23:19:01.468][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:01.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:01.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:01.472][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-12-30 23:19:01.473][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-12-30 23:19:01.479][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-12-30 23:19:01.481][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:01.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:01.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:01.487][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-12-30 23:19:01.489][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-12-30 23:19:01.490][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-12-30 23:19:01.492][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:01.493][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:01.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:01.495][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-12-30 23:19:01.497][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-30 23:19:01.499][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-12-30 23:19:01.500][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:01.501][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-30 23:19:01.502][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:01.503][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-30 23:19:01.505][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-30 23:19:01.506][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-30 23:19:01.507][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-12-30 23:19:01.509][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-30 23:19:01.510][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:01.511][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-12-30 23:19:01.512][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-30 23:19:01.513][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:19:01.515][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:01.516][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-30 23:19:01.516][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-30 23:19:01.516][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-30 23:19:01.516][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-12-30 23:19:01.516][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-12-30 23:19:01.517][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-30 23:19:01.518][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-30 23:19:01.520][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-30 23:19:01.522][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-30 23:19:01.523][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-30 23:19:01.525][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-30 23:19:01.527][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-30 23:19:01.529][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:19:01.531][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-30 23:19:01.533][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-30 23:19:01.535][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-30 23:19:01.537][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:19:01.539][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-12-30 23:19:01.541][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-30 23:19:01.543][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-12-30 23:19:01.544][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:01.545][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-30 23:19:01.546][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:01.548][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-30 23:19:01.549][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-30 23:19:01.550][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-30 23:19:01.551][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-12-30 23:19:01.553][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-30 23:19:01.554][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:01.555][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-12-30 23:19:01.556][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-30 23:19:01.558][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:19:01.559][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:01.560][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-30 23:19:01.560][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-30 23:19:01.560][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-30 23:19:01.560][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-12-30 23:19:01.560][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-12-30 23:19:01.561][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-30 23:19:01.562][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-30 23:19:01.564][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-30 23:19:01.565][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-30 23:19:01.566][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-30 23:19:01.567][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-30 23:19:01.568][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-30 23:19:01.570][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:19:01.571][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-30 23:19:01.572][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-30 23:19:01.573][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-30 23:19:01.574][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:19:01.576][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-12-30 23:19:01.578][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:01.579][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-12-30 23:19:01.580][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:01.581][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-30 23:19:01.582][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:01.584][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-30 23:19:01.585][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-30 23:19:01.586][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-30 23:19:01.587][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-12-30 23:19:01.589][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-30 23:19:01.590][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-12-30 23:19:01.591][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-12-30 23:19:01.592][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-30 23:19:01.594][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:19:01.595][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:01.596][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:19:01.597][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-30 23:19:01.598][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-30 23:19:01.600][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-30 23:19:01.601][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-30 23:19:01.602][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-30 23:19:01.603][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-30 23:19:01.604][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-30 23:19:01.605][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:19:01.607][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-30 23:19:01.608][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-30 23:19:01.609][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-30 23:19:01.610][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:19:01.611][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-12-30 23:19:01.614][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:01.616][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-12-30 23:19:01.617][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:01.619][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-30 23:19:01.620][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:01.627][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-30 23:19:01.634][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-30 23:19:01.635][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-30 23:19:01.636][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-12-30 23:19:01.637][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-30 23:19:01.639][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-12-30 23:19:01.640][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-12-30 23:19:01.641][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-30 23:19:01.642][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:19:01.643][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:01.645][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:19:01.647][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-30 23:19:01.648][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-30 23:19:01.650][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-30 23:19:01.652][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-30 23:19:01.654][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-30 23:19:01.656][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-30 23:19:01.658][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-30 23:19:01.660][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:19:01.661][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-30 23:19:01.662][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-30 23:19:01.664][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-30 23:19:01.665][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:19:01.667][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-30 23:19:01.668][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:01.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:01.670][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:01.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:01.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:01.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:01.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:01.676][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:01.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:01.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:01.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:01.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:01.682][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:01.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:01.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:01.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:01.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:01.688][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:01.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:01.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:01.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:01.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:01.695][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:01.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:01.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:01.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:01.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:01.704][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:01.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:01.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:01.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:01.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:01.712][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:01.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:01.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:01.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:01.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:01.721][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:01.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:01.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:01.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:01.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:01.729][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:01.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:01.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:01.735][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:01.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:01.738][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:01.740][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:01.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:01.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:01.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:01.747][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:01.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:01.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:01.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:01.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:01.756][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:01.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:01.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:01.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:01.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:01.764][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:01.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:01.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:01.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:01.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:01.773][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:01.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:01.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:01.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:01.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:01.782][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:01.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:01.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:01.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:01.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:01.790][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:01.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:01.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:01.796][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:01.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:01.799][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:01.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:01.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:01.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:01.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:01.808][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-12-30 23:19:01.811][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-12-30 23:19:01.813][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-12-30 23:19:01.816][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-12-30 23:19:01.819][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-12-30 23:19:01.821][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-12-30 23:19:01.824][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-12-30 23:19:01.826][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-12-30 23:19:01.829][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-12-30 23:19:01.832][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-12-30 23:19:01.834][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-12-30 23:19:01.837][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-12-30 23:19:01.839][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-12-30 23:19:01.842][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-12-30 23:19:01.844][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-12-30 23:19:01.847][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-12-30 23:19:01.850][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-12-30 23:19:01.853][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-12-30 23:19:01.855][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-12-30 23:19:01.858][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-12-30 23:19:01.861][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-12-30 23:19:01.864][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-12-30 23:19:01.866][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-12-30 23:19:01.869][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-12-30 23:19:01.872][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-12-30 23:19:01.874][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-12-30 23:19:01.877][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-12-30 23:19:01.880][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-12-30 23:19:01.883][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-12-30 23:19:01.885][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-12-30 23:19:01.888][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-12-30 23:19:01.891][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-12-30 23:19:01.894][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-12-30 23:19:01.896][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-12-30 23:19:01.899][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-12-30 23:19:01.901][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-12-30 23:19:01.903][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-12-30 23:19:01.906][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-12-30 23:19:01.908][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-12-30 23:19:01.911][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-12-30 23:19:01.913][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-12-30 23:19:01.916][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-12-30 23:19:01.918][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-12-30 23:19:01.921][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-12-30 23:19:01.923][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-12-30 23:19:01.926][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-12-30 23:19:01.928][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-12-30 23:19:01.931][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-12-30 23:19:01.933][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-12-30 23:19:01.936][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-12-30 23:19:01.938][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-12-30 23:19:01.941][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-12-30 23:19:01.943][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-12-30 23:19:01.946][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-12-30 23:19:01.948][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-12-30 23:19:01.951][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-12-30 23:19:01.953][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-12-30 23:19:01.956][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-12-30 23:19:01.959][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-12-30 23:19:01.961][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-12-30 23:19:01.964][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-12-30 23:19:01.966][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-12-30 23:19:01.969][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-12-30 23:19:01.971][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-12-30 23:19:01.974][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-12-30 23:19:01.976][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-12-30 23:19:01.979][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-12-30 23:19:01.981][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-12-30 23:19:01.984][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-12-30 23:19:01.986][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-12-30 23:19:01.989][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-12-30 23:19:01.992][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-12-30 23:19:01.994][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-12-30 23:19:01.996][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-12-30 23:19:01.999][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-12-30 23:19:02.002][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-12-30 23:19:02.004][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-12-30 23:19:02.007][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-12-30 23:19:02.009][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-12-30 23:19:02.012][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-12-30 23:19:02.014][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-12-30 23:19:02.017][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-12-30 23:19:02.020][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-12-30 23:19:02.023][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-12-30 23:19:02.027][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2024-12-30 23:19:02.029][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-30 23:19:02.030][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:02.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:02.034][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:02.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:02.038][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:02.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:02.041][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:02.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:02.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:02.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:02.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:02.050][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:02.052][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:02.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:02.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:02.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:02.059][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:02.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:02.062][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:02.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:02.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:02.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:02.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:02.071][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:02.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:02.075][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:02.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:02.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:02.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:02.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:02.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:02.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:02.087][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:02.089][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:02.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:02.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:02.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:02.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:02.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:02.100][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:02.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:02.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:02.105][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:02.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:02.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:02.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:02.112][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:02.114][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:02.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:02.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:02.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:02.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:02.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:02.124][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:02.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:02.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:02.130][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:02.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:02.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:02.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:02.137][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:02.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:02.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:02.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:02.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:02.145][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:02.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:02.147][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:02.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:02.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:02.151][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:02.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:02.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:02.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:02.155][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:02.156][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:02.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:02.158][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:02.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:02.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:02.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:02.163][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:02.165][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:02.166][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:02.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:02.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:02.170][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:02.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:02.173][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:02.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:02.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:02.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:02.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:02.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:02.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:02.184][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:02.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:02.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:02.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:02.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:02.192][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:02.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:02.196][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:02.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:02.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:02.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:02.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:02.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:02.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:02.207][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:02.208][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:02.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:02.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:02.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:02.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:02.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:02.222][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:02.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:02.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:02.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:02.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:02.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:02.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:02.233][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-12-30 23:19:02.235][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-12-30 23:19:02.237][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-30 23:19:02.238][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-12-30 23:19:02.240][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:02.242][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-30 23:19:02.245][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:02.247][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-30 23:19:02.249][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:02.250][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-12-30 23:19:02.253][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-12-30 23:19:02.255][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-30 23:19:02.257][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:02.259][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-12-30 23:19:02.261][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-30 23:19:02.263][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-12-30 23:19:02.263][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-12-30 23:19:02.263][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-12-30 23:19:02.263][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-12-30 23:19:02.263][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-12-30 23:19:02.263][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-12-30 23:19:02.263][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-12-30 23:19:02.263][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-12-30 23:19:02.263][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-12-30 23:19:02.263][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-12-30 23:19:02.263][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-12-30 23:19:02.265][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-30 23:19:02.267][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-30 23:19:02.267][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-30 23:19:02.267][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-30 23:19:02.269][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-12-30 23:19:02.271][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-30 23:19:02.273][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-30 23:19:02.275][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-30 23:19:02.277][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-30 23:19:02.279][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-30 23:19:02.281][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-30 23:19:02.283][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-30 23:19:02.283][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-12-30 23:19:02.285][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-30 23:19:02.286][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-30 23:19:02.288][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:02.290][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-12-30 23:19:02.290][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-12-30 23:19:02.293][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-12-30 23:19:02.296][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-12-30 23:19:02.299][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-12-30 23:19:02.302][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-12-30 23:19:02.303][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-12-30 23:19:02.305][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-12-30 23:19:02.309][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-12-30 23:19:02.310][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-12-30 23:19:02.312][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-12-30 23:19:02.314][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-12-30 23:19:02.315][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-30 23:19:02.316][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-30 23:19:02.319][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-12-30 23:19:02.320][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-12-30 23:19:02.323][biodb::testThat]
biodb.INFO [2024-12-30 23:19:02.325][biodb::testThat] Running test function test.chebi.wsGetLiteEntity (" Web service getLiteEntity works fine. ").
biodb.INFO [2024-12-30 23:19:02.327][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-30 23:19:02.329][biodb::testThat]
biodb.DEBUG[2024-12-30 23:19:02.334][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-12-30 23:19:02.342][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-30 23:19:02.344][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-30 23:19:02.346][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.TRACE[2024-12-30 23:19:02.897][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl).
biodb.DEBUG[2024-12-30 23:19:03.381][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-30 23:19:03.385][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content"
biodb.TRACE[2024-12-30 23:19:03.393][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.request"
biodb.DEBUG[2024-12-30 23:19:03.401][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-12-30 23:19:03.408][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-30 23:19:03.410][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-30 23:19:03.414][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI%20ID&maximumResults=10&starsCategory=ALL".
biodb.TRACE[2024-12-30 23:19:03.744][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI%20ID&maximumResults=10&starsCategory=ALL).
biodb.DEBUG[2024-12-30 23:19:04.067][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-30 23:19:04.072][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content"
biodb.TRACE[2024-12-30 23:19:05.414][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.request"
biodb.INFO [2024-12-30 23:19:05.440][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-12-30 23:19:05.442][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-12-30 23:19:05.445][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-12-30 23:19:05.447][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-12-30 23:19:05.449][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:05.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:05.452][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:05.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:05.456][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:05.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-12-30 23:19:05.465][biodb::testContext]
biodb.INFO [2024-12-30 23:19:05.467][biodb::testContext] ********************************************************************************
biodb.INFO [2024-12-30 23:19:05.469][biodb::testContext] Test context - Non regression tests
biodb.INFO [2024-12-30 23:19:05.471][biodb::testContext] ********************************************************************************
biodb.INFO [2024-12-30 23:19:05.473][biodb::testContext]
biodb.INFO [2024-12-30 23:19:05.477][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-12-30 23:19:05.481][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-12-30 23:19:05.487][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-30 23:19:05.488][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-12-30 23:19:05.489][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-12-30 23:19:05.491][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:05.493][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:05.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:05.496][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-12-30 23:19:05.497][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-12-30 23:19:05.499][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:05.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:05.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:05.502][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-12-30 23:19:05.503][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-12-30 23:19:05.504][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:05.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:05.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:05.509][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-12-30 23:19:05.511][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-12-30 23:19:05.513][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-12-30 23:19:05.515][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:05.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:05.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:05.521][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-12-30 23:19:05.523][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-12-30 23:19:05.525][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-12-30 23:19:05.527][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:05.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:05.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:05.532][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-12-30 23:19:05.535][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-12-30 23:19:05.536][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:05.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:05.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:05.541][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-12-30 23:19:05.542][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-12-30 23:19:05.544][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-12-30 23:19:05.545][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:05.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:05.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:05.548][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-12-30 23:19:05.549][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-12-30 23:19:05.551][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:05.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:05.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:05.555][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-12-30 23:19:05.556][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-12-30 23:19:05.557][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-12-30 23:19:05.558][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:05.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:05.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:05.562][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-12-30 23:19:05.563][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-12-30 23:19:05.564][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-12-30 23:19:05.565][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-12-30 23:19:05.566][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-12-30 23:19:05.568][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-12-30 23:19:05.569][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:05.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:05.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:05.572][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-12-30 23:19:05.574][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-12-30 23:19:05.575][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:05.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:05.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:05.578][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-12-30 23:19:05.579][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-12-30 23:19:05.581][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:05.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:05.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:05.584][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-12-30 23:19:05.585][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-12-30 23:19:05.587][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:05.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:05.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:05.590][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-12-30 23:19:05.591][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-12-30 23:19:05.592][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:05.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:05.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:05.596][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-12-30 23:19:05.597][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-12-30 23:19:05.598][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:05.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:05.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:05.602][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-12-30 23:19:05.603][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-12-30 23:19:05.608][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-12-30 23:19:05.609][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:05.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:05.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:05.613][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-12-30 23:19:05.614][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-12-30 23:19:05.615][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-12-30 23:19:05.617][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:05.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:05.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:05.620][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-12-30 23:19:05.622][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-30 23:19:05.624][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-12-30 23:19:05.625][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:05.626][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-30 23:19:05.627][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:05.629][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-30 23:19:05.630][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-30 23:19:05.631][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-30 23:19:05.632][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-12-30 23:19:05.634][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-30 23:19:05.635][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:05.636][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-12-30 23:19:05.638][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-30 23:19:05.639][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:19:05.641][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:05.642][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-30 23:19:05.642][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-30 23:19:05.642][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-30 23:19:05.642][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-12-30 23:19:05.642][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-12-30 23:19:05.643][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-30 23:19:05.644][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-30 23:19:05.646][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-30 23:19:05.647][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-30 23:19:05.648][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-30 23:19:05.649][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-30 23:19:05.651][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-30 23:19:05.652][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:19:05.653][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-30 23:19:05.655][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-30 23:19:05.656][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-30 23:19:05.657][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:19:05.659][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-12-30 23:19:05.661][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-30 23:19:05.663][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-12-30 23:19:05.665][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:05.666][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-30 23:19:05.667][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:05.669][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-30 23:19:05.670][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-30 23:19:05.671][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-30 23:19:05.672][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-12-30 23:19:05.673][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-30 23:19:05.675][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:05.676][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-12-30 23:19:05.677][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-30 23:19:05.678][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:19:05.680][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:05.681][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-30 23:19:05.681][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-30 23:19:05.681][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-30 23:19:05.681][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-12-30 23:19:05.681][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-12-30 23:19:05.682][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-30 23:19:05.683][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-30 23:19:05.684][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-30 23:19:05.686][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-30 23:19:05.687][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-30 23:19:05.688][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-30 23:19:05.690][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-30 23:19:05.691][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:19:05.692][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-30 23:19:05.693][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-30 23:19:05.695][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-30 23:19:05.697][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:19:05.700][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-12-30 23:19:05.703][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:05.705][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-12-30 23:19:05.707][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:05.710][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-30 23:19:05.712][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:05.714][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-30 23:19:05.716][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-30 23:19:05.718][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-30 23:19:05.720][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-12-30 23:19:05.722][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-30 23:19:05.724][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-12-30 23:19:05.726][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-12-30 23:19:05.729][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-30 23:19:05.731][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:19:05.733][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:05.735][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:19:05.737][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-30 23:19:05.738][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-30 23:19:05.740][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-30 23:19:05.741][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-30 23:19:05.742][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-30 23:19:05.744][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-30 23:19:05.746][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-30 23:19:05.749][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:19:05.751][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-30 23:19:05.753][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-30 23:19:05.755][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-30 23:19:05.756][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:19:05.758][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-12-30 23:19:05.760][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:05.761][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-12-30 23:19:05.763][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:05.764][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-30 23:19:05.766][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:05.767][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-30 23:19:05.769][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-30 23:19:05.770][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-30 23:19:05.772][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-12-30 23:19:05.774][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-30 23:19:05.775][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-12-30 23:19:05.776][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-12-30 23:19:05.778][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-30 23:19:05.779][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:19:05.781][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:05.782][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:19:05.783][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-30 23:19:05.785][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-30 23:19:05.786][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-30 23:19:05.787][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-30 23:19:05.801][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-30 23:19:05.803][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-30 23:19:05.805][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-30 23:19:05.807][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:19:05.809][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-30 23:19:05.810][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-30 23:19:05.812][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-30 23:19:05.814][self$setPropertyValue]
biodb.DEBUG[2024-12-30 23:19:05.817][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-30 23:19:05.819][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:05.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:05.822][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:05.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:05.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:05.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:05.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:05.829][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:05.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:05.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:05.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:05.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:05.835][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:05.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:05.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:05.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:05.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:05.844][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:05.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:05.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:05.849][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:05.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:05.852][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:05.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:05.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:05.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:05.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:05.857][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:05.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:05.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:05.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:05.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:05.865][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:05.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:05.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:05.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:05.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:05.874][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:05.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:05.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:05.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:05.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:05.882][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:05.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:05.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:05.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:05.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:05.891][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:05.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:05.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:05.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:05.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:05.899][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:05.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:05.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:05.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:05.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:05.908][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:05.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:05.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:05.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:05.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:05.917][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:05.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:05.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:05.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:05.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:05.925][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:05.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:05.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:05.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:05.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:05.932][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:05.933][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:05.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:05.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:05.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:05.939][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:05.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:05.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:05.944][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:05.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:05.948][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:05.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:05.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:05.952][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:05.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:05.956][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-12-30 23:19:05.959][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-12-30 23:19:05.961][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-12-30 23:19:05.964][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-12-30 23:19:05.967][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-12-30 23:19:05.969][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-12-30 23:19:05.972][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-12-30 23:19:05.974][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-12-30 23:19:05.976][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-12-30 23:19:05.978][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-12-30 23:19:05.980][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-12-30 23:19:05.982][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-12-30 23:19:05.984][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-12-30 23:19:05.985][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-12-30 23:19:05.987][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-12-30 23:19:05.988][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-12-30 23:19:05.990][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-12-30 23:19:05.992][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-12-30 23:19:05.994][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-12-30 23:19:05.997][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-12-30 23:19:05.999][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-12-30 23:19:06.001][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-12-30 23:19:06.002][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-12-30 23:19:06.004][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-12-30 23:19:06.005][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-12-30 23:19:06.007][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-12-30 23:19:06.009][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-12-30 23:19:06.010][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-12-30 23:19:06.012][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-12-30 23:19:06.014][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-12-30 23:19:06.016][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-12-30 23:19:06.018][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-12-30 23:19:06.020][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-12-30 23:19:06.021][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-12-30 23:19:06.024][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-12-30 23:19:06.027][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-12-30 23:19:06.029][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-12-30 23:19:06.032][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-12-30 23:19:06.035][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-12-30 23:19:06.037][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-12-30 23:19:06.040][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-12-30 23:19:06.042][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-12-30 23:19:06.045][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-12-30 23:19:06.048][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-12-30 23:19:06.050][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-12-30 23:19:06.053][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-12-30 23:19:06.056][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-12-30 23:19:06.058][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-12-30 23:19:06.061][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-12-30 23:19:06.064][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-12-30 23:19:06.066][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-12-30 23:19:06.069][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-12-30 23:19:06.071][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-12-30 23:19:06.074][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-12-30 23:19:06.077][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-12-30 23:19:06.080][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-12-30 23:19:06.082][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-12-30 23:19:06.085][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-12-30 23:19:06.088][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-12-30 23:19:06.091][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-12-30 23:19:06.093][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-12-30 23:19:06.096][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-12-30 23:19:06.099][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-12-30 23:19:06.102][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-12-30 23:19:06.104][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-12-30 23:19:06.106][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-12-30 23:19:06.108][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-12-30 23:19:06.110][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-12-30 23:19:06.112][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-12-30 23:19:06.114][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-12-30 23:19:06.115][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-12-30 23:19:06.118][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-12-30 23:19:06.121][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-12-30 23:19:06.122][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-12-30 23:19:06.124][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-12-30 23:19:06.126][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-12-30 23:19:06.127][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-12-30 23:19:06.129][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-12-30 23:19:06.130][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-12-30 23:19:06.132][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-12-30 23:19:06.134][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-12-30 23:19:06.135][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-12-30 23:19:06.137][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-12-30 23:19:06.139][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-12-30 23:19:06.141][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2024-12-30 23:19:06.142][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-30 23:19:06.144][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:06.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:06.146][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:06.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:06.149][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:06.150][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:06.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:06.152][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:06.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:06.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:06.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:06.158][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:06.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:06.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:06.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:06.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:06.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:06.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:06.166][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:06.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:06.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:06.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:06.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:06.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:06.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:06.174][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:06.175][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:06.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:06.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:06.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:06.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:06.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:06.182][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:06.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:06.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:06.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:06.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:06.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:06.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:06.190][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:06.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:06.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:06.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:06.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:06.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:06.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:06.200][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:06.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:06.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:06.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:06.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:06.208][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:06.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:06.212][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:06.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:06.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:06.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:06.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:06.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:06.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:06.224][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:06.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:06.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:06.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:06.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:06.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:06.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:06.234][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:06.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:06.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:06.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:06.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:06.243][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:06.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:06.247][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:06.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:06.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:06.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:06.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:06.255][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:06.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:06.259][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:06.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:06.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:06.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:06.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:06.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:06.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:06.272][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:06.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:06.275][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:06.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:06.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:06.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:06.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:06.284][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:06.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:06.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:06.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:06.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:06.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:06.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:06.297][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:06.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:06.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:06.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:06.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:06.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:06.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:06.306][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:06.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:06.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:06.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:06.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:06.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:06.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:06.317][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-30 23:19:06.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:06.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:06.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:06.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:06.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:06.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:06.333][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-12-30 23:19:06.336][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-12-30 23:19:06.349][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-30 23:19:06.351][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-12-30 23:19:06.353][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:06.355][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-30 23:19:06.357][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:06.359][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-30 23:19:06.361][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:06.363][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-12-30 23:19:06.365][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-12-30 23:19:06.367][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-30 23:19:06.369][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:06.371][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-12-30 23:19:06.372][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-30 23:19:06.375][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-12-30 23:19:06.375][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-12-30 23:19:06.375][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-12-30 23:19:06.375][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-12-30 23:19:06.375][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-12-30 23:19:06.375][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-12-30 23:19:06.375][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-12-30 23:19:06.375][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-12-30 23:19:06.375][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-12-30 23:19:06.375][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-12-30 23:19:06.375][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-12-30 23:19:06.377][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-30 23:19:06.379][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-30 23:19:06.379][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-30 23:19:06.379][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-30 23:19:06.380][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-12-30 23:19:06.382][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-30 23:19:06.384][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-30 23:19:06.386][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-30 23:19:06.388][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-30 23:19:06.389][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-30 23:19:06.391][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-30 23:19:06.393][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-30 23:19:06.393][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-12-30 23:19:06.395][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-30 23:19:06.397][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-30 23:19:06.399][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-30 23:19:06.400][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-12-30 23:19:06.400][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-12-30 23:19:06.403][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-12-30 23:19:06.406][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-12-30 23:19:06.408][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-12-30 23:19:06.411][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-12-30 23:19:06.414][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-12-30 23:19:06.416][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-12-30 23:19:06.422][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-12-30 23:19:06.424][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-12-30 23:19:06.426][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-12-30 23:19:06.429][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-12-30 23:19:06.431][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-30 23:19:06.433][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-30 23:19:06.436][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-12-30 23:19:06.438][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-12-30 23:19:06.441][biodb::testThat]
biodb.INFO [2024-12-30 23:19:06.443][biodb::testThat] Running test function test.chebi.encoding.issue.in.xml (" ChEBI encoding issue in XML is handled. ").
biodb.INFO [2024-12-30 23:19:06.445][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-30 23:19:06.446][biodb::testThat]
biodb.DEBUG[2024-12-30 23:19:06.452][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-12-30 23:19:06.459][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-30 23:19:06.461][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-12-30 23:19:06.463][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:19:06.466][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-12-30 23:19:06.470][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-12-30 23:19:06.474][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-30 23:19:06.476][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2024-12-30 23:19:06.479][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-30 23:19:06.482][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.DEBUG[2024-12-30 23:19:06.489][private$loadEntries] Creating entries from ids [1]: "2571".
biodb.DEBUG[2024-12-30 23:19:06.491][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-30 23:19:06.494][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2571".
biodb.TRACE[2024-12-30 23:19:06.496][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-30 23:19:06.498][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-30 23:19:06.499][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-30 23:19:06.501][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-30 23:19:06.502][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-30 23:19:06.503][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-30 23:19:06.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:19:06.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:06.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:06.521][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:06.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:06.525][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:06.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-30 23:19:06.530][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2571".
biodb.DEBUG[2024-12-30 23:19:06.535][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-30 23:19:06.537][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-30 23:19:06.540][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2571".
biodb.TRACE[2024-12-30 23:19:08.209][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2571).
biodb.DEBUG[2024-12-30 23:19:08.836][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-30 23:19:08.840][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52df2611aa7f9f4c531cce8ac62e2fa0.content"
biodb.TRACE[2024-12-30 23:19:08.849][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52df2611aa7f9f4c531cce8ac62e2fa0.request"
biodb.TRACE[2024-12-30 23:19:08.854][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2571.xml"
biodb.DEBUG[2024-12-30 23:19:08.859][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-30 23:19:08.862][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-30 23:19:08.865][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-30 23:19:08.868][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-30 23:19:08.869][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:08.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:08.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:08.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:08.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:08.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-30 23:19:08.896][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:19:08.898][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:19:08.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:19:08.902][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:19:08.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:19:08.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:19:08.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:19:08.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:19:08.926][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:19:08.927][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:19:08.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:19:08.930][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:19:08.932][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-30 23:19:08.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-30 23:19:08.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:19:08.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:19:08.937][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:19:08.939][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:19:08.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:19:08.941][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:19:08.943][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-30 23:19:08.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-30 23:19:08.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:19:08.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:19:08.949][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-30 23:19:08.951][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-30 23:19:08.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:19:08.954][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:19:08.957][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-30 23:19:08.960][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-30 23:19:08.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:19:08.963][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:19:08.966][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:19:08.969][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:19:08.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:19:08.972][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:19:08.975][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:19:08.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-30 23:19:08.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:19:08.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:19:08.983][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:19:08.986][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:19:08.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:19:08.989][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:19:08.992][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-30 23:19:08.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-30 23:19:08.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:19:08.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:19:09.000][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:19:09.003][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:19:09.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:19:09.006][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:19:09.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:19:09.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-30 23:19:09.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:19:09.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:19:09.017][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:19:09.019][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:19:09.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:19:09.023][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:19:09.027][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-30 23:19:09.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-30 23:19:09.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:19:09.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:19:09.035][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:19:09.037][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:19:09.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:19:09.041][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:19:09.044][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-30 23:19:09.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-30 23:19:09.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:19:09.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:19:09.052][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:19:09.054][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:19:09.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:19:09.057][ef$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:19:09.060][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-30 23:19:09.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-30 23:19:09.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:19:09.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:19:09.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:19:09.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:19:09.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:19:09.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:19:09.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:19:09.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:19:09.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:19:09.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:19:09.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:19:09.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:19:09.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:19:09.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:19:09.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-30 23:19:09.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-30 23:19:09.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:19:09.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:19:09.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:19:09.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:19:09.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:19:09.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:19:09.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:19:09.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:19:09.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:19:09.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:19:09.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:19:09.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:19:09.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:19:09.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:19:09.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:19:09.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:19:09.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:19:09.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:19:09.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:19:09.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:19:09.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:19:09.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-30 23:19:09.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-30 23:19:09.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-30 23:19:09.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-30 23:19:09.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-30 23:19:09.146][self$createEntryFromContent] Accession numbers: 2571.
biodb.INFO [2024-12-30 23:19:09.159][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-12-30 23:19:09.161][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-12-30 23:19:09.163][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-12-30 23:19:09.164][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-12-30 23:19:09.165][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-30 23:19:09.166][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-30 23:19:09.167][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-30 23:19:09.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-30 23:19:09.170][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-12-30 23:19:09.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 359 ]
>
> proc.time()
user system elapsed
25.95 1.43 62.51
biodbChebi.Rcheck/biodbChebi-Ex.timings
| name | user | system | elapsed | |
| ChebiConn | 4.36 | 2.22 | 88.71 | |
| ChebiEntry | 0.65 | 0.05 | 0.68 | |