Aaron Lun
| Snapshot Date: 2024-11-28 13:00 -0500 (Thu, 28 Nov 2024) |
| git_url: https://git.bioconductor.org/packages/basilisk |
| git_branch: RELEASE_3_20 |
| git_last_commit: 31887d4 |
| git_last_commit_date: 2024-10-29 10:43:26 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-12-02 12:03 -0500 (Mon, 02 Dec 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4739 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4482 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4510 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4462 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 139/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| basilisk 1.18.0 (landing page) Aaron Lun
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | TIMEOUT | OK | |||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the basilisk package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/basilisk.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: basilisk |
| Version: 1.18.0 |
| Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:basilisk.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings basilisk_1.18.0.tar.gz |
| StartedAt: 2024-11-28 20:20:33 -0500 (Thu, 28 Nov 2024) |
| EndedAt: 2024-11-28 20:43:29 -0500 (Thu, 28 Nov 2024) |
| EllapsedTime: 1376.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: basilisk.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:basilisk.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings basilisk_1.18.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘basilisk/DESCRIPTION’ ... OK
* this is package ‘basilisk’ version ‘1.18.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
inst/example/.BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘basilisk’ can be installed ... NOTE
Found the following notes/warnings:
Non-staged installation was used
See ‘/home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
basiliskStart 122.529 10.362 136.777
createLocalBasiliskEnv 59.908 4.701 67.623
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/00check.log’
for details.
basilisk.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL basilisk ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘basilisk’ ... ** using non-staged installation via StagedInstall field ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (basilisk)
basilisk.Rcheck/tests/testthat.Rout
R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(basilisk)
Loading required package: reticulate
> if (.Platform$OS.type != "windows") test_check("basilisk")
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.10.14
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2024.8.30-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_2
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc conda-forge/linux-64::libgcc-14.2.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.2.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.2.0-h77fa898_1
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.47.0-hadc24fc_1
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-he02047a_1
openssl conda-forge/linux-64::openssl-3.4.0-hb9d3cd8_0
pip conda-forge/noarch::pip-24.3.1-pyh8b19718_0
python conda-forge/linux-64::python-3.10.14-hd12c33a_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.6.0-pyhff2d567_1
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.11.0
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.11.0
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- pandas=1.4.3
- python-dateutil=2.8.2
- python=3.10.14
- pytz=2022.2.1
The following NEW packages will be INSTALLED:
libblas conda-forge/linux-64::libblas-3.9.0-25_linux64_openblas
libcblas conda-forge/linux-64::libcblas-3.9.0-25_linux64_openblas
libgfortran conda-forge/linux-64::libgfortran-14.2.0-h69a702a_1
libgfortran5 conda-forge/linux-64::libgfortran5-14.2.0-hd5240d6_1
liblapack conda-forge/linux-64::liblapack-3.9.0-25_linux64_openblas
libopenblas conda-forge/linux-64::libopenblas-0.3.28-pthreads_h94d23a6_1
libstdcxx conda-forge/linux-64::libstdcxx-14.2.0-hc0a3c3a_1
libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-14.2.0-h4852527_1
numpy conda-forge/linux-64::numpy-1.26.4-py310hb13e2d6_0
pandas conda-forge/linux-64::pandas-1.4.3-py310h769672d_0
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python_abi conda-forge/linux-64::python_abi-3.10-5_cp310
pytz conda-forge/noarch::pytz-2022.2.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.10.14
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2024.8.30-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_2
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc conda-forge/linux-64::libgcc-14.2.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.2.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.2.0-h77fa898_1
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.47.0-hadc24fc_1
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-he02047a_1
openssl conda-forge/linux-64::openssl-3.4.0-hb9d3cd8_0
pip conda-forge/noarch::pip-24.3.1-pyh8b19718_0
python conda-forge/linux-64::python-3.10.14-hd12c33a_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.6.0-pyhff2d567_1
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.11.0
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.11.0
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- pandas=1.4.2
- python-dateutil=2.8.1
- python=3.10.14
- pytz=2022.1
The following NEW packages will be INSTALLED:
libblas conda-forge/linux-64::libblas-3.9.0-25_linux64_openblas
libcblas conda-forge/linux-64::libcblas-3.9.0-25_linux64_openblas
libgfortran conda-forge/linux-64::libgfortran-14.2.0-h69a702a_1
libgfortran5 conda-forge/linux-64::libgfortran5-14.2.0-hd5240d6_1
liblapack conda-forge/linux-64::liblapack-3.9.0-25_linux64_openblas
libopenblas conda-forge/linux-64::libopenblas-0.3.28-pthreads_h94d23a6_1
libstdcxx conda-forge/linux-64::libstdcxx-14.2.0-hc0a3c3a_1
libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-14.2.0-h4852527_1
numpy conda-forge/linux-64::numpy-1.26.4-py310hb13e2d6_0
pandas conda-forge/linux-64::pandas-1.4.2-py310h769672d_2
python-dateutil conda-forge/noarch::python-dateutil-2.8.1-py_0
python_abi conda-forge/linux-64::python_abi-3.10-5_cp310
pytz conda-forge/noarch::pytz-2022.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=2.7
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
ca-certificates conda-forge/linux-64::ca-certificates-2024.8.30-hbcca054_0
certifi conda-forge/linux-64::certifi-2019.11.28-py27h8c360ce_1
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_2
libffi conda-forge/linux-64::libffi-3.2.1-he1b5a44_1007
libgcc conda-forge/linux-64::libgcc-14.2.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.2.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.2.0-h77fa898_1
libsqlite conda-forge/linux-64::libsqlite-3.46.0-hde9e2c9_0
libstdcxx conda-forge/linux-64::libstdcxx-14.2.0-hc0a3c3a_1
libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-14.2.0-h4852527_1
libzlib conda-forge/linux-64::libzlib-1.2.13-h4ab18f5_6
ncurses conda-forge/linux-64::ncurses-6.5-he02047a_1
openssl conda-forge/linux-64::openssl-1.1.1w-hd590300_0
pip conda-forge/noarch::pip-20.1.1-pyh9f0ad1d_0
python conda-forge/linux-64::python-2.7.15-h5a48372_1011_cpython
python_abi conda-forge/linux-64::python_abi-2.7-1_cp27mu
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/linux-64::setuptools-44.0.0-py27_0
sqlite conda-forge/linux-64::sqlite-3.46.0-h6d4b2fc_0
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
wheel conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0
zlib conda-forge/linux-64::zlib-1.2.13-h4ab18f5_6
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.11.0
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.11.0
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.10.14
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2024.8.30-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_2
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc conda-forge/linux-64::libgcc-14.2.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.2.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.2.0-h77fa898_1
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.47.0-hadc24fc_1
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-he02047a_1
openssl conda-forge/linux-64::openssl-3.4.0-hb9d3cd8_0
pip conda-forge/noarch::pip-24.3.1-pyh8b19718_0
python conda-forge/linux-64::python-3.10.14-hd12c33a_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.6.0-pyhff2d567_1
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.11.0
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.11.0
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python-dateutil=2.8.1
- python=3.10.14
- pytz=2022.1
The following NEW packages will be INSTALLED:
python-dateutil conda-forge/noarch::python-dateutil-2.8.1-py_0
pytz conda-forge/noarch::pytz-2022.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting pandas==1.4.2
Using cached pandas-1.4.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (12 kB)
Requirement already satisfied: python-dateutil>=2.8.1 in ./install-test-client/thingo/lib/python3.10/site-packages (from pandas==1.4.2) (2.8.1)
Requirement already satisfied: pytz>=2020.1 in ./install-test-client/thingo/lib/python3.10/site-packages (from pandas==1.4.2) (2022.1)
Collecting numpy>=1.21.0 (from pandas==1.4.2)
Using cached numpy-2.1.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (62 kB)
Requirement already satisfied: six>=1.5 in ./install-test-client/thingo/lib/python3.10/site-packages (from python-dateutil>=2.8.1->pandas==1.4.2) (1.16.0)
Using cached pandas-1.4.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (11.7 MB)
Using cached numpy-2.1.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.3 MB)
Installing collected packages: numpy, pandas
Successfully installed numpy-2.1.3 pandas-1.4.2
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.10.14
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2024.8.30-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_2
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc conda-forge/linux-64::libgcc-14.2.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.2.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.2.0-h77fa898_1
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.47.0-hadc24fc_1
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-he02047a_1
openssl conda-forge/linux-64::openssl-3.4.0-hb9d3cd8_0
pip conda-forge/noarch::pip-24.3.1-pyh8b19718_0
python conda-forge/linux-64::python-3.10.14-hd12c33a_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.6.0-pyhff2d567_1
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.11.0
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.11.0
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Processing /home/biocbuild/bbs-3.20-bioc/R/site-library/basilisk/example/inst/test_dummy
Preparing metadata (setup.py): started
Preparing metadata (setup.py): finished with status 'done'
Building wheels for collected packages: test_dummy
Building wheel for test_dummy (setup.py): started
Building wheel for test_dummy (setup.py): finished with status 'done'
Created wheel for test_dummy: filename=test_dummy-0.1-py3-none-any.whl size=1279 sha256=7e606d295389b842d93674b1da57788d73cff6b0f18314eb5dd6b65e423ef2e1
Stored in directory: /home/biocbuild/bbs-3.20-bioc/tmpdir/pip-ephem-wheel-cache-qsmuzudi/wheels/1c/54/a3/d45a8fc417e6bf1735de6f8b82e42ba76de61164beecd61c26
Successfully built test_dummy
Installing collected packages: test_dummy
Successfully installed test_dummy-0.1
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.10.14
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2024.8.30-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_2
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc conda-forge/linux-64::libgcc-14.2.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.2.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.2.0-h77fa898_1
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.47.0-hadc24fc_1
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-he02047a_1
openssl conda-forge/linux-64::openssl-3.4.0-hb9d3cd8_0
pip conda-forge/noarch::pip-24.3.1-pyh8b19718_0
python conda-forge/linux-64::python-3.10.14-hd12c33a_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.6.0-pyhff2d567_1
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.11.0
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed
PackagesNotFoundError: The following packages are not available from current channels:
- whheeeeeeeeeeeeeeeeee=0.0.1*
Current channels:
- https://conda.anaconda.org/conda-forge
To search for alternate channels that may provide the conda package you're
looking for, navigate to
https://anaconda.org
and use the search bar at the top of the page.
trying URL 'https://github.com/conda-forge/miniforge/releases/download/24.3.0-0/Miniforge3-24.3.0-0-Linux-x86_64.sh'
Content type 'application/octet-stream' length 82796318 bytes (79.0 MB)
==================================================
downloaded 79.0 MB
PREFIX=/home/biocbuild/bbs-3.20-bioc/tmpdir/RtmpTziOKy/file4dfa51de8e2b6/1.18.0/0
Unpacking payload ...
Extracting _libgcc_mutex-0.1-conda_forge.tar.bz2
Extracting ca-certificates-2024.2.2-hbcca054_0.conda
Extracting ld_impl_linux-64-2.40-h41732ed_0.conda
Extracting libstdcxx-ng-13.2.0-h7e041cc_5.conda
Extracting pybind11-abi-4-hd8ed1ab_3.tar.bz2
Extracting python_abi-3.10-4_cp310.conda
Extracting tzdata-2024a-h0c530f3_0.conda
Extracting libgomp-13.2.0-h807b86a_5.conda
Extracting _openmp_mutex-4.5-2_gnu.tar.bz2
Extracting libgcc-ng-13.2.0-h807b86a_5.conda
Extracting bzip2-1.0.8-hd590300_5.conda
Extracting c-ares-1.28.1-hd590300_0.conda
Extracting fmt-10.2.1-h00ab1b0_0.conda
Extracting icu-73.2-h59595ed_0.conda
Extracting keyutils-1.6.1-h166bdaf_0.tar.bz2
Extracting libev-4.33-hd590300_2.conda
Extracting libffi-3.4.2-h7f98852_5.tar.bz2
Extracting libiconv-1.17-hd590300_2.conda
Extracting libnsl-2.0.1-hd590300_0.conda
Extracting libuuid-2.38.1-h0b41bf4_0.conda
Extracting libxcrypt-4.4.36-hd590300_1.conda
Extracting libzlib-1.2.13-hd590300_5.conda
Extracting lz4-c-1.9.4-hcb278e6_0.conda
Extracting lzo-2.10-h516909a_1000.tar.bz2
Extracting ncurses-6.4.20240210-h59595ed_0.conda
Extracting openssl-3.2.1-hd590300_1.conda
Extracting reproc-14.2.4.post0-hd590300_1.conda
Extracting xz-5.2.6-h166bdaf_0.tar.bz2
Extracting yaml-cpp-0.8.0-h59595ed_0.conda
Extracting libedit-3.1.20191231-he28a2e2_2.tar.bz2
Extracting libnghttp2-1.58.0-h47da74e_1.conda
Extracting libsolv-0.7.28-hfc55251_2.conda
Extracting libsqlite-3.45.2-h2797004_0.conda
Extracting libssh2-1.11.0-h0841786_0.conda
Extracting libxml2-2.12.6-h232c23b_1.conda
Extracting readline-8.2-h8228510_1.conda
Extracting reproc-cpp-14.2.4.post0-h59595ed_1.conda
Extracting tk-8.6.13-noxft_h4845f30_101.conda
Extracting zstd-1.5.5-hfc55251_0.conda
Extracting krb5-1.21.2-h659d440_0.conda
Extracting libarchive-3.7.2-h2aa1ff5_1.conda
Extracting python-3.10.14-hd12c33a_0_cpython.conda
Extracting libcurl-8.7.1-hca28451_0.conda
Extracting menuinst-2.0.2-py310hff52083_0.conda
Extracting archspec-0.2.3-pyhd8ed1ab_0.conda
Extracting boltons-24.0.0-pyhd8ed1ab_0.conda
Extracting brotli-python-1.1.0-py310hc6cd4ac_1.conda
Extracting certifi-2024.2.2-pyhd8ed1ab_0.conda
Extracting charset-normalizer-3.3.2-pyhd8ed1ab_0.conda
Extracting colorama-0.4.6-pyhd8ed1ab_0.tar.bz2
Extracting distro-1.9.0-pyhd8ed1ab_0.conda
Extracting idna-3.6-pyhd8ed1ab_0.conda
Extracting jsonpointer-2.4-py310hff52083_3.conda
Extracting libmamba-1.5.8-had39da4_0.conda
Extracting packaging-24.0-pyhd8ed1ab_0.conda
Extracting platformdirs-4.2.0-pyhd8ed1ab_0.conda
Extracting pluggy-1.4.0-pyhd8ed1ab_0.conda
Extracting pycosat-0.6.6-py310h2372a71_0.conda
Extracting pycparser-2.22-pyhd8ed1ab_0.conda
Extracting pysocks-1.7.1-pyha2e5f31_6.tar.bz2
Extracting ruamel.yaml.clib-0.2.8-py310h2372a71_0.conda
Extracting setuptools-69.5.1-pyhd8ed1ab_0.conda
Extracting truststore-0.8.0-pyhd8ed1ab_0.conda
Extracting wheel-0.43.0-pyhd8ed1ab_1.conda
Extracting cffi-1.16.0-py310h2fee648_0.conda
Extracting jsonpatch-1.33-pyhd8ed1ab_0.conda
Extracting libmambapy-1.5.8-py310h39ff949_0.conda
Extracting pip-24.0-pyhd8ed1ab_0.conda
Extracting ruamel.yaml-0.18.6-py310h2372a71_0.conda
Extracting tqdm-4.66.2-pyhd8ed1ab_0.conda
Extracting urllib3-2.2.1-pyhd8ed1ab_0.conda
Extracting requests-2.31.0-pyhd8ed1ab_0.conda
Extracting zstandard-0.22.0-py310h1275a96_0.conda
Extracting conda-package-streaming-0.9.0-pyhd8ed1ab_0.conda
Extracting conda-package-handling-2.2.0-pyh38be061_0.conda
Extracting conda-24.3.0-py310hff52083_0.conda
Extracting conda-libmamba-solver-24.1.0-pyhd8ed1ab_0.conda
Extracting mamba-1.5.8-py310h51d5547_0.conda
Installing base environment...
Transaction
Prefix: /home/biocbuild/bbs-3.20-bioc/tmpdir/RtmpTziOKy/file4dfa51de8e2b6/1.18.0/0
Updating specs:
- conda-forge/linux-64::_libgcc_mutex==0.1=conda_forge[md5=d7c89558ba9fa0495403155b64376d81]
- conda-forge/linux-64::ca-certificates==2024.2.2=hbcca054_0[md5=2f4327a1cbe7f022401b236e915a5fef]
- conda-forge/linux-64::ld_impl_linux-64==2.40=h41732ed_0[md5=7aca3059a1729aa76c597603f10b0dd3]
- conda-forge/linux-64::libstdcxx-ng==13.2.0=h7e041cc_5[md5=f6f6600d18a4047b54f803cf708b868a]
- conda-forge/noarch::pybind11-abi==4=hd8ed1ab_3[md5=878f923dd6acc8aeb47a75da6c4098be]
- conda-forge/linux-64::python_abi==3.10=4_cp310[md5=26322ec5d7712c3ded99dd656142b8ce]
- conda-forge/noarch::tzdata==2024a=h0c530f3_0[md5=161081fc7cec0bfda0d86d7cb595f8d8]
- conda-forge/linux-64::libgomp==13.2.0=h807b86a_5[md5=d211c42b9ce49aee3734fdc828731689]
- conda-forge/linux-64::_openmp_mutex==4.5=2_gnu[md5=73aaf86a425cc6e73fcf236a5a46396d]
- conda-forge/linux-64::libgcc-ng==13.2.0=h807b86a_5[md5=d4ff227c46917d3b4565302a2bbb276b]
- conda-forge/linux-64::bzip2==1.0.8=hd590300_5[md5=69b8b6202a07720f448be700e300ccf4]
- conda-forge/linux-64::c-ares==1.28.1=hd590300_0[md5=dcde58ff9a1f30b0037a2315d1846d1f]
- conda-forge/linux-64::fmt==10.2.1=h00ab1b0_0[md5=35ef8bc24bd34074ebae3c943d551728]
- conda-forge/linux-64::icu==73.2=h59595ed_0[md5=cc47e1facc155f91abd89b11e48e72ff]
- conda-forge/linux-64::keyutils==1.6.1=h166bdaf_0[md5=30186d27e2c9fa62b45fb1476b7200e3]
- conda-forge/linux-64::libev==4.33=hd590300_2[md5=172bf1cd1ff8629f2b1179945ed45055]
- conda-forge/linux-64::libffi==3.4.2=h7f98852_5[md5=d645c6d2ac96843a2bfaccd2d62b3ac3]
- conda-forge/linux-64::libiconv==1.17=hd590300_2[md5=d66573916ffcf376178462f1b61c941e]
- conda-forge/linux-64::libnsl==2.0.1=hd590300_0[md5=30fd6e37fe21f86f4bd26d6ee73eeec7]
- conda-forge/linux-64::libuuid==2.38.1=h0b41bf4_0[md5=40b61aab5c7ba9ff276c41cfffe6b80b]
- conda-forge/linux-64::libxcrypt==4.4.36=hd590300_1[md5=5aa797f8787fe7a17d1b0821485b5adc]
- conda-forge/linux-64::libzlib==1.2.13=hd590300_5[md5=f36c115f1ee199da648e0597ec2047ad]
- conda-forge/linux-64::lz4-c==1.9.4=hcb278e6_0[md5=318b08df404f9c9be5712aaa5a6f0bb0]
- conda-forge/linux-64::lzo==2.10=h516909a_1000[md5=bb14fcb13341b81d5eb386423b9d2bac]
- conda-forge/linux-64::ncurses==6.4.20240210=h59595ed_0[md5=97da8860a0da5413c7c98a3b3838a645]
- conda-forge/linux-64::openssl==3.2.1=hd590300_1[md5=9d731343cff6ee2e5a25c4a091bf8e2a]
- conda-forge/linux-64::reproc==14.2.4.post0=hd590300_1[md5=82ca53502dfd5a64a80dee76dae14685]
- conda-forge/linux-64::xz==5.2.6=h166bdaf_0[md5=2161070d867d1b1204ea749c8eec4ef0]
- conda-forge/linux-64::yaml-cpp==0.8.0=h59595ed_0[md5=965eaacd7c18eb8361fd12bb9e7a57d7]
- conda-forge/linux-64::libedit==3.1.20191231=he28a2e2_2[md5=4d331e44109e3f0e19b4cb8f9b82f3e1]
- conda-forge/linux-64::libnghttp2==1.58.0=h47da74e_1[md5=700ac6ea6d53d5510591c4344d5c989a]
- conda-forge/linux-64::libsolv==0.7.28=hfc55251_2[md5=535bafe1ed0a5bdd3f4c125ca05d378c]
- conda-forge/linux-64::libsqlite==3.45.2=h2797004_0[md5=866983a220e27a80cb75e85cb30466a1]
- conda-forge/linux-64::libssh2==1.11.0=h0841786_0[md5=1f5a58e686b13bcfde88b93f547d23fe]
- conda-forge/linux-64::libxml2==2.12.6=h232c23b_1[md5=6853448e9ca1cfd5f15382afd2a6d123]
- conda-forge/linux-64::readline==8.2=h8228510_1[md5=47d31b792659ce70f470b5c82fdfb7a4]
- conda-forge/linux-64::reproc-cpp==14.2.4.post0=h59595ed_1[md5=715e1d720ec1a03715bebd237972fca5]
- conda-forge/linux-64::tk==8.6.13=noxft_h4845f30_101[md5=d453b98d9c83e71da0741bb0ff4d76bc]
- conda-forge/linux-64::zstd==1.5.5=hfc55251_0[md5=04b88013080254850d6c01ed54810589]
- conda-forge/linux-64::krb5==1.21.2=h659d440_0[md5=cd95826dbd331ed1be26bdf401432844]
- conda-forge/linux-64::libarchive==3.7.2=h2aa1ff5_1[md5=3bf887827d1968275978361a6e405e4f]
- conda-forge/linux-64::python==3.10.14=hd12c33a_0_cpython[md5=2b4ba962994e8bd4be9ff5b64b75aff2]
- conda-forge/linux-64::libcurl==8.7.1=hca28451_0[md5=755c7f876815003337d2c61ff5d047e5]
- conda-forge/linux-64::menuinst==2.0.2=py310hff52083_0[md5=4837faab0d3e665df57fef662148c6a3]
- conda-forge/noarch::archspec==0.2.3=pyhd8ed1ab_0[md5=192278292e20704f663b9c766909d67b]
- conda-forge/noarch::boltons==24.0.0=pyhd8ed1ab_0[md5=61de176bd62041f9cd5bd4fcd09eb0ff]
- conda-forge/linux-64::brotli-python==1.1.0=py310hc6cd4ac_1[md5=1f95722c94f00b69af69a066c7433714]
- conda-forge/noarch::certifi==2024.2.2=pyhd8ed1ab_0[md5=0876280e409658fc6f9e75d035960333]
- conda-forge/noarch::charset-normalizer==3.3.2=pyhd8ed1ab_0[md5=7f4a9e3fcff3f6356ae99244a014da6a]
- conda-forge/noarch::colorama==0.4.6=pyhd8ed1ab_0[md5=3faab06a954c2a04039983f2c4a50d99]
- conda-forge/noarch::distro==1.9.0=pyhd8ed1ab_0[md5=bbdb409974cd6cb30071b1d978302726]
- conda-forge/noarch::idna==3.6=pyhd8ed1ab_0[md5=1a76f09108576397c41c0b0c5bd84134]
- conda-forge/linux-64::jsonpointer==2.4=py310hff52083_3[md5=08ec1463dbc5c806a32fc431874032ca]
- conda-forge/linux-64::libmamba==1.5.8=had39da4_0[md5=def669885dc103d8acb7ac2ac35e0b2f]
- conda-forge/noarch::packaging==24.0=pyhd8ed1ab_0[md5=248f521b64ce055e7feae3105e7abeb8]
- conda-forge/noarch::platformdirs==4.2.0=pyhd8ed1ab_0[md5=a0bc3eec34b0fab84be6b2da94e98e20]
- conda-forge/noarch::pluggy==1.4.0=pyhd8ed1ab_0[md5=139e9feb65187e916162917bb2484976]
- conda-forge/linux-64::pycosat==0.6.6=py310h2372a71_0[md5=0adaac9a86d59adae2bc86b3cdef2df1]
- conda-forge/noarch::pycparser==2.22=pyhd8ed1ab_0[md5=844d9eb3b43095b031874477f7d70088]
- conda-forge/noarch::pysocks==1.7.1=pyha2e5f31_6[md5=2a7de29fb590ca14b5243c4c812c8025]
- conda-forge/linux-64::ruamel.yaml.clib==0.2.8=py310h2372a71_0[md5=dcf6d2535586c77b31425ed835610c54]
- conda-forge/noarch::setuptools==69.5.1=pyhd8ed1ab_0[md5=7462280d81f639363e6e63c81276bd9e]
- conda-forge/noarch::truststore==0.8.0=pyhd8ed1ab_0[md5=08316d001eca8854392cf2837828ea11]
- conda-forge/noarch::wheel==0.43.0=pyhd8ed1ab_1[md5=0b5293a157c2b5cd513dd1b03d8d3aae]
- conda-forge/linux-64::cffi==1.16.0=py310h2fee648_0[md5=45846a970e71ac98fd327da5d40a0a2c]
- conda-forge/noarch::jsonpatch==1.33=pyhd8ed1ab_0[md5=bfdb7c5c6ad1077c82a69a8642c87aff]
- conda-forge/linux-64::libmambapy==1.5.8=py310h39ff949_0[md5=37f8aa15b73c4691eeec15caf45aab25]
- conda-forge/noarch::pip==24.0=pyhd8ed1ab_0[md5=f586ac1e56c8638b64f9c8122a7b8a67]
- conda-forge/linux-64::ruamel.yaml==0.18.6=py310h2372a71_0[md5=50b7d9b39099cdbabf65bf27df73a793]
- conda-forge/noarch::tqdm==4.66.2=pyhd8ed1ab_0[md5=2b8dfb969f984497f3f98409a9545776]
- conda-forge/noarch::urllib3==2.2.1=pyhd8ed1ab_0[md5=08807a87fa7af10754d46f63b368e016]
- conda-forge/noarch::requests==2.31.0=pyhd8ed1ab_0[md5=a30144e4156cdbb236f99ebb49828f8b]
- conda-forge/linux-64::zstandard==0.22.0=py310h1275a96_0[md5=54698ba13cd3494547b289cd86a2176a]
- conda-forge/noarch::conda-package-streaming==0.9.0=pyhd8ed1ab_0[md5=38253361efb303deead3eab39ae9269b]
- conda-forge/noarch::conda-package-handling==2.2.0=pyh38be061_0[md5=8a3ae7f6318376aa08ea753367bb7dd6]
- conda-forge/linux-64::conda==24.3.0=py310hff52083_0[md5=4187d17c4b75d8f7757820e835c507c9]
- conda-forge/noarch::conda-libmamba-solver==24.1.0=pyhd8ed1ab_0[md5=304dc78ad6e52e0fd663df1d484c1531]
- conda-forge/linux-64::mamba==1.5.8=py310h51d5547_0[md5=3b335eaa4894cbb5379a75f83a4d6b40]
Package Version Build Channel Size
─────────────────────────────────────────────────────────────────────────────────────
Install:
─────────────────────────────────────────────────────────────────────────────────────
+ _libgcc_mutex 0.1 conda_forge conda-forge
+ ca-certificates 2024.2.2 hbcca054_0 conda-forge
+ ld_impl_linux-64 2.40 h41732ed_0 conda-forge
+ libstdcxx-ng 13.2.0 h7e041cc_5 conda-forge
+ pybind11-abi 4 hd8ed1ab_3 conda-forge
+ python_abi 3.10 4_cp310 conda-forge
+ tzdata 2024a h0c530f3_0 conda-forge
+ libgomp 13.2.0 h807b86a_5 conda-forge
+ _openmp_mutex 4.5 2_gnu conda-forge
+ libgcc-ng 13.2.0 h807b86a_5 conda-forge
+ bzip2 1.0.8 hd590300_5 conda-forge
+ c-ares 1.28.1 hd590300_0 conda-forge
+ fmt 10.2.1 h00ab1b0_0 conda-forge
+ icu 73.2 h59595ed_0 conda-forge
+ keyutils 1.6.1 h166bdaf_0 conda-forge
+ libev 4.33 hd590300_2 conda-forge
+ libffi 3.4.2 h7f98852_5 conda-forge
+ libiconv 1.17 hd590300_2 conda-forge
+ libnsl 2.0.1 hd590300_0 conda-forge
+ libuuid 2.38.1 h0b41bf4_0 conda-forge
+ libxcrypt 4.4.36 hd590300_1 conda-forge
+ libzlib 1.2.13 hd590300_5 conda-forge
+ lz4-c 1.9.4 hcb278e6_0 conda-forge
+ lzo 2.10 h516909a_1000 conda-forge
+ ncurses 6.4.20240210 h59595ed_0 conda-forge
+ openssl 3.2.1 hd590300_1 conda-forge
+ reproc 14.2.4.post0 hd590300_1 conda-forge
+ xz 5.2.6 h166bdaf_0 conda-forge
+ yaml-cpp 0.8.0 h59595ed_0 conda-forge
+ libedit 3.1.20191231 he28a2e2_2 conda-forge
+ libnghttp2 1.58.0 h47da74e_1 conda-forge
+ libsolv 0.7.28 hfc55251_2 conda-forge
+ libsqlite 3.45.2 h2797004_0 conda-forge
+ libssh2 1.11.0 h0841786_0 conda-forge
+ libxml2 2.12.6 h232c23b_1 conda-forge
+ readline 8.2 h8228510_1 conda-forge
+ reproc-cpp 14.2.4.post0 h59595ed_1 conda-forge
+ tk 8.6.13 noxft_h4845f30_101 conda-forge
+ zstd 1.5.5 hfc55251_0 conda-forge
+ krb5 1.21.2 h659d440_0 conda-forge
+ libarchive 3.7.2 h2aa1ff5_1 conda-forge
+ python 3.10.14 hd12c33a_0_cpython conda-forge
+ libcurl 8.7.1 hca28451_0 conda-forge
+ menuinst 2.0.2 py310hff52083_0 conda-forge
+ archspec 0.2.3 pyhd8ed1ab_0 conda-forge
+ boltons 24.0.0 pyhd8ed1ab_0 conda-forge
+ brotli-python 1.1.0 py310hc6cd4ac_1 conda-forge
+ certifi 2024.2.2 pyhd8ed1ab_0 conda-forge
+ charset-normalizer 3.3.2 pyhd8ed1ab_0 conda-forge
+ colorama 0.4.6 pyhd8ed1ab_0 conda-forge
+ distro 1.9.0 pyhd8ed1ab_0 conda-forge
+ idna 3.6 pyhd8ed1ab_0 conda-forge
+ jsonpointer 2.4 py310hff52083_3 conda-forge
+ libmamba 1.5.8 had39da4_0 conda-forge
+ packaging 24.0 pyhd8ed1ab_0 conda-forge
+ platformdirs 4.2.0 pyhd8ed1ab_0 conda-forge
+ pluggy 1.4.0 pyhd8ed1ab_0 conda-forge
+ pycosat 0.6.6 py310h2372a71_0 conda-forge
+ pycparser 2.22 pyhd8ed1ab_0 conda-forge
+ pysocks 1.7.1 pyha2e5f31_6 conda-forge
+ ruamel.yaml.clib 0.2.8 py310h2372a71_0 conda-forge
+ setuptools 69.5.1 pyhd8ed1ab_0 conda-forge
+ truststore 0.8.0 pyhd8ed1ab_0 conda-forge
+ wheel 0.43.0 pyhd8ed1ab_1 conda-forge
+ cffi 1.16.0 py310h2fee648_0 conda-forge
+ jsonpatch 1.33 pyhd8ed1ab_0 conda-forge
+ libmambapy 1.5.8 py310h39ff949_0 conda-forge
+ pip 24.0 pyhd8ed1ab_0 conda-forge
+ ruamel.yaml 0.18.6 py310h2372a71_0 conda-forge
+ tqdm 4.66.2 pyhd8ed1ab_0 conda-forge
+ urllib3 2.2.1 pyhd8ed1ab_0 conda-forge
+ requests 2.31.0 pyhd8ed1ab_0 conda-forge
+ zstandard 0.22.0 py310h1275a96_0 conda-forge
+ conda-package-streaming 0.9.0 pyhd8ed1ab_0 conda-forge
+ conda-package-handling 2.2.0 pyh38be061_0 conda-forge
+ conda 24.3.0 py310hff52083_0 conda-forge
+ conda-libmamba-solver 24.1.0 pyhd8ed1ab_0 conda-forge
+ mamba 1.5.8 py310h51d5547_0 conda-forge
Summary:
Install: 78 packages
Total download: 0 B
─────────────────────────────────────────────────────────────────────────────────────
Transaction starting
Linking _libgcc_mutex-0.1-conda_forge
Linking ca-certificates-2024.2.2-hbcca054_0
Linking ld_impl_linux-64-2.40-h41732ed_0
Linking libstdcxx-ng-13.2.0-h7e041cc_5
Linking pybind11-abi-4-hd8ed1ab_3
Linking python_abi-3.10-4_cp310
Linking tzdata-2024a-h0c530f3_0
Linking libgomp-13.2.0-h807b86a_5
Linking _openmp_mutex-4.5-2_gnu
Linking libgcc-ng-13.2.0-h807b86a_5
Linking bzip2-1.0.8-hd590300_5
Linking c-ares-1.28.1-hd590300_0
Linking fmt-10.2.1-h00ab1b0_0
Linking icu-73.2-h59595ed_0
Linking keyutils-1.6.1-h166bdaf_0
Linking libev-4.33-hd590300_2
Linking libffi-3.4.2-h7f98852_5
Linking libiconv-1.17-hd590300_2
Linking libnsl-2.0.1-hd590300_0
Linking libuuid-2.38.1-h0b41bf4_0
Linking libxcrypt-4.4.36-hd590300_1
Linking libzlib-1.2.13-hd590300_5
Linking lz4-c-1.9.4-hcb278e6_0
Linking lzo-2.10-h516909a_1000
Linking ncurses-6.4.20240210-h59595ed_0
Linking openssl-3.2.1-hd590300_1
Linking reproc-14.2.4.post0-hd590300_1
Linking xz-5.2.6-h166bdaf_0
Linking yaml-cpp-0.8.0-h59595ed_0
Linking libedit-3.1.20191231-he28a2e2_2
Linking libnghttp2-1.58.0-h47da74e_1
Linking libsolv-0.7.28-hfc55251_2
Linking libsqlite-3.45.2-h2797004_0
Linking libssh2-1.11.0-h0841786_0
Linking libxml2-2.12.6-h232c23b_1
Linking readline-8.2-h8228510_1
Linking reproc-cpp-14.2.4.post0-h59595ed_1
Linking tk-8.6.13-noxft_h4845f30_101
Linking zstd-1.5.5-hfc55251_0
Linking krb5-1.21.2-h659d440_0
Linking libarchive-3.7.2-h2aa1ff5_1
Linking python-3.10.14-hd12c33a_0_cpython
Linking libcurl-8.7.1-hca28451_0
Linking menuinst-2.0.2-py310hff52083_0
Linking archspec-0.2.3-pyhd8ed1ab_0
Linking boltons-24.0.0-pyhd8ed1ab_0
Linking brotli-python-1.1.0-py310hc6cd4ac_1
Linking certifi-2024.2.2-pyhd8ed1ab_0
Linking charset-normalizer-3.3.2-pyhd8ed1ab_0
Linking colorama-0.4.6-pyhd8ed1ab_0
Linking distro-1.9.0-pyhd8ed1ab_0
Linking idna-3.6-pyhd8ed1ab_0
Linking jsonpointer-2.4-py310hff52083_3
Linking libmamba-1.5.8-had39da4_0
Linking packaging-24.0-pyhd8ed1ab_0
Linking platformdirs-4.2.0-pyhd8ed1ab_0
Linking pluggy-1.4.0-pyhd8ed1ab_0
Linking pycosat-0.6.6-py310h2372a71_0
Linking pycparser-2.22-pyhd8ed1ab_0
Linking pysocks-1.7.1-pyha2e5f31_6
Linking ruamel.yaml.clib-0.2.8-py310h2372a71_0
Linking setuptools-69.5.1-pyhd8ed1ab_0
Linking truststore-0.8.0-pyhd8ed1ab_0
Linking wheel-0.43.0-pyhd8ed1ab_1
Linking cffi-1.16.0-py310h2fee648_0
Linking jsonpatch-1.33-pyhd8ed1ab_0
Linking libmambapy-1.5.8-py310h39ff949_0
Linking pip-24.0-pyhd8ed1ab_0
Linking ruamel.yaml-0.18.6-py310h2372a71_0
Linking tqdm-4.66.2-pyhd8ed1ab_0
Linking urllib3-2.2.1-pyhd8ed1ab_0
Linking requests-2.31.0-pyhd8ed1ab_0
Linking zstandard-0.22.0-py310h1275a96_0
Linking conda-package-streaming-0.9.0-pyhd8ed1ab_0
Linking conda-package-handling-2.2.0-pyh38be061_0
Linking conda-24.3.0-py310hff52083_0
Linking conda-libmamba-solver-24.1.0-pyhd8ed1ab_0
Linking mamba-1.5.8-py310h51d5547_0
Transaction finished
To activate this environment, use:
micromamba activate /home/biocbuild/bbs-3.20-bioc/tmpdir/RtmpTziOKy/file4dfa51de8e2b6/1.18.0/0
Or to execute a single command in this environment, use:
micromamba run -p /home/biocbuild/bbs-3.20-bioc/tmpdir/RtmpTziOKy/file4dfa51de8e2b6/1.18.0/0 mycommand
installation finished.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.20-bioc/tmpdir/RtmpTziOKy/file4dfa51de8e2b6/1.18.0/basilisk.utils/1.18.0/test
added / updated specs:
- python=3.10.14
The following packages will be downloaded:
package | build
---------------------------|-----------------
bzip2-1.0.8 | h4bc722e_7 247 KB conda-forge
ca-certificates-2024.8.30 | hbcca054_0 155 KB conda-forge
ld_impl_linux-64-2.43 | h712a8e2_2 654 KB conda-forge
libgcc-14.2.0 | h77fa898_1 829 KB conda-forge
libgcc-ng-14.2.0 | h69a702a_1 53 KB conda-forge
libgomp-14.2.0 | h77fa898_1 450 KB conda-forge
libsqlite-3.47.0 | hadc24fc_1 855 KB conda-forge
libzlib-1.3.1 | hb9d3cd8_2 60 KB conda-forge
ncurses-6.5 | he02047a_1 868 KB conda-forge
openssl-3.4.0 | hb9d3cd8_0 2.8 MB conda-forge
pip-24.3.1 | pyh8b19718_0 1.2 MB conda-forge
setuptools-75.6.0 | pyhff2d567_1 756 KB conda-forge
tzdata-2024b | hc8b5060_0 119 KB conda-forge
wheel-0.45.1 | pyhd8ed1ab_0 62 KB conda-forge
------------------------------------------------------------
Total: 9.0 MB
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2024.8.30-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_2
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc conda-forge/linux-64::libgcc-14.2.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.2.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.2.0-h77fa898_1
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.47.0-hadc24fc_1
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-he02047a_1
openssl conda-forge/linux-64::openssl-3.4.0-hb9d3cd8_0
pip conda-forge/noarch::pip-24.3.1-pyh8b19718_0
python conda-forge/linux-64::python-3.10.14-hd12c33a_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.6.0-pyhff2d567_1
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.11.0
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.11.0
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /home/biocbuild/bbs-3.20-bioc/tmpdir/RtmpTziOKy/file4dfa51de8e2b6/1.18.0/basilisk.utils/1.18.0/test
added / updated specs:
- pandas=1.4.3
- python=3.10.14
The following packages will be downloaded:
package | build
---------------------------|-----------------
libblas-3.9.0 |25_linux64_openblas 15 KB conda-forge
libcblas-3.9.0 |25_linux64_openblas 15 KB conda-forge
libgfortran-14.2.0 | h69a702a_1 53 KB conda-forge
libgfortran5-14.2.0 | hd5240d6_1 1.4 MB conda-forge
liblapack-3.9.0 |25_linux64_openblas 15 KB conda-forge
libopenblas-0.3.28 |pthreads_h94d23a6_1 5.3 MB conda-forge
libstdcxx-14.2.0 | hc0a3c3a_1 3.7 MB conda-forge
libstdcxx-ng-14.2.0 | h4852527_1 53 KB conda-forge
numpy-1.26.4 | py310hb13e2d6_0 6.7 MB conda-forge
pandas-1.4.3 | py310h769672d_0 12.5 MB conda-forge
python-dateutil-2.9.0.post0| pyhff2d567_0 217 KB conda-forge
python_abi-3.10 | 5_cp310 6 KB conda-forge
pytz-2024.2 | pyhd8ed1ab_0 183 KB conda-forge
six-1.16.0 | pyh6c4a22f_0 14 KB conda-forge
------------------------------------------------------------
Total: 30.1 MB
The following NEW packages will be INSTALLED:
libblas conda-forge/linux-64::libblas-3.9.0-25_linux64_openblas
libcblas conda-forge/linux-64::libcblas-3.9.0-25_linux64_openblas
libgfortran conda-forge/linux-64::libgfortran-14.2.0-h69a702a_1
libgfortran5 conda-forge/linux-64::libgfortran5-14.2.0-hd5240d6_1
liblapack conda-forge/linux-64::liblapack-3.9.0-25_linux64_openblas
libopenblas conda-forge/linux-64::libopenblas-0.3.28-pthreads_h94d23a6_1
libstdcxx conda-forge/linux-64::libstdcxx-14.2.0-hc0a3c3a_1
libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-14.2.0-h4852527_1
numpy conda-forge/linux-64::numpy-1.26.4-py310hb13e2d6_0
pandas conda-forge/linux-64::pandas-1.4.3-py310h769672d_0
python-dateutil conda-forge/noarch::python-dateutil-2.9.0.post0-pyhff2d567_0
python_abi conda-forge/linux-64::python_abi-3.10-5_cp310
pytz conda-forge/noarch::pytz-2024.2-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/locality/1.18.0
added / updated specs:
- python=3.10.14
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2024.8.30-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_2
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc conda-forge/linux-64::libgcc-14.2.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.2.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.2.0-h77fa898_1
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.47.0-hadc24fc_1
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-he02047a_1
openssl conda-forge/linux-64::openssl-3.4.0-hb9d3cd8_0
pip conda-forge/noarch::pip-24.3.1-pyh8b19718_0
python conda-forge/linux-64::python-3.10.14-hd12c33a_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.6.0-pyhff2d567_1
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.11.0
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.11.0
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/locality/1.18.0
added / updated specs:
- pandas=1.4.3
- python-dateutil=2.8.2
- python=3.10.14
- pytz=2022.2.1
The following NEW packages will be INSTALLED:
libblas conda-forge/linux-64::libblas-3.9.0-25_linux64_openblas
libcblas conda-forge/linux-64::libcblas-3.9.0-25_linux64_openblas
libgfortran conda-forge/linux-64::libgfortran-14.2.0-h69a702a_1
libgfortran5 conda-forge/linux-64::libgfortran5-14.2.0-hd5240d6_1
liblapack conda-forge/linux-64::liblapack-3.9.0-25_linux64_openblas
libopenblas conda-forge/linux-64::libopenblas-0.3.28-pthreads_h94d23a6_1
libstdcxx conda-forge/linux-64::libstdcxx-14.2.0-hc0a3c3a_1
libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-14.2.0-h4852527_1
numpy conda-forge/linux-64::numpy-1.26.4-py310hb13e2d6_0
pandas conda-forge/linux-64::pandas-1.4.3-py310h769672d_0
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python_abi conda-forge/linux-64::python_abi-3.10-5_cp310
pytz conda-forge/noarch::pytz-2022.2.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_A
added / updated specs:
- python=3.10.14
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2024.8.30-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_2
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc conda-forge/linux-64::libgcc-14.2.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.2.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.2.0-h77fa898_1
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.47.0-hadc24fc_1
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-he02047a_1
openssl conda-forge/linux-64::openssl-3.4.0-hb9d3cd8_0
pip conda-forge/noarch::pip-24.3.1-pyh8b19718_0
python conda-forge/linux-64::python-3.10.14-hd12c33a_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.6.0-pyhff2d567_1
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.11.0
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.11.0
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_A
added / updated specs:
- pandas=1.4.3
- python-dateutil=2.8.2
- python=3.10.14
- pytz=2022.2.1
The following NEW packages will be INSTALLED:
libblas conda-forge/linux-64::libblas-3.9.0-25_linux64_openblas
libcblas conda-forge/linux-64::libcblas-3.9.0-25_linux64_openblas
libgfortran conda-forge/linux-64::libgfortran-14.2.0-h69a702a_1
libgfortran5 conda-forge/linux-64::libgfortran5-14.2.0-hd5240d6_1
liblapack conda-forge/linux-64::liblapack-3.9.0-25_linux64_openblas
libopenblas conda-forge/linux-64::libopenblas-0.3.28-pthreads_h94d23a6_1
libstdcxx conda-forge/linux-64::libstdcxx-14.2.0-hc0a3c3a_1
libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-14.2.0-h4852527_1
numpy conda-forge/linux-64::numpy-1.26.4-py310hb13e2d6_0
pandas conda-forge/linux-64::pandas-1.4.3-py310h769672d_0
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python_abi conda-forge/linux-64::python_abi-3.10-5_cp310
pytz conda-forge/noarch::pytz-2022.2.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_B
added / updated specs:
- python=3.10.14
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2024.8.30-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_2
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc conda-forge/linux-64::libgcc-14.2.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.2.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.2.0-h77fa898_1
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.47.0-hadc24fc_1
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-he02047a_1
openssl conda-forge/linux-64::openssl-3.4.0-hb9d3cd8_0
pip conda-forge/noarch::pip-24.3.1-pyh8b19718_0
python conda-forge/linux-64::python-3.10.14-hd12c33a_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.6.0-pyhff2d567_1
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.11.0
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.11.0
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /home/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_B
added / updated specs:
- pandas=1.4.2
- python-dateutil=2.8.1
- python=3.10.14
- pytz=2022.1
The following NEW packages will be INSTALLED:
libblas conda-forge/linux-64::libblas-3.9.0-25_linux64_openblas
libcblas conda-forge/linux-64::libcblas-3.9.0-25_linux64_openblas
libgfortran conda-forge/linux-64::libgfortran-14.2.0-h69a702a_1
libgfortran5 conda-forge/linux-64::libgfortran5-14.2.0-hd5240d6_1
liblapack conda-forge/linux-64::liblapack-3.9.0-25_linux64_openblas
libopenblas conda-forge/linux-64::libopenblas-0.3.28-pthreads_h94d23a6_1
libstdcxx conda-forge/linux-64::libstdcxx-14.2.0-hc0a3c3a_1
libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-14.2.0-h4852527_1
numpy conda-forge/linux-64::numpy-1.26.4-py310hb13e2d6_0
pandas conda-forge/linux-64::pandas-1.4.2-py310h769672d_2
python-dateutil conda-forge/noarch::python-dateutil-2.8.1-py_0
python_abi conda-forge/linux-64::python_abi-3.10-5_cp310
pytz conda-forge/noarch::pytz-2022.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 63 ]
>
> proc.time()
user system elapsed
677.624 63.536 770.701
basilisk.Rcheck/basilisk-Ex.timings
| name | user | system | elapsed | |
| BasiliskEnvironment-class | 0.002 | 0.000 | 0.003 | |
| PyPiLink | 0 | 0 | 0 | |
| basiliskOptions | 0 | 0 | 0 | |
| basiliskStart | 122.529 | 10.362 | 136.777 | |
| configureBasiliskEnv | 0.000 | 0.000 | 0.001 | |
| createLocalBasiliskEnv | 59.908 | 4.701 | 67.623 | |
| listPackages | 0.477 | 0.085 | 0.636 | |
| obtainEnvironmentPath | 0.009 | 0.000 | 0.008 | |
| setupBasiliskEnv | 0.006 | 0.000 | 0.006 | |
| useBasiliskEnv | 0.394 | 0.082 | 0.384 | |