Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-08-13 17:43 -0400 (Tue, 13 Aug 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4758 |
palomino7 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4493 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4522 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4471 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 2208/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
TRESS 1.10.0 (landing page) Zhenxing Guo
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | NA | |||||||||
To the developers/maintainers of the TRESS package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TRESS.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: TRESS |
Version: 1.10.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:TRESS.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings TRESS_1.10.0.tar.gz |
StartedAt: 2024-08-13 13:21:24 -0400 (Tue, 13 Aug 2024) |
EndedAt: 2024-08-13 13:27:05 -0400 (Tue, 13 Aug 2024) |
EllapsedTime: 341.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: TRESS.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:TRESS.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings TRESS_1.10.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/TRESS.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.6 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘TRESS/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘TRESS’ version ‘1.10.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... NOTE Vignette dependency required without any vignettes:: ‘knitr’ * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘TRESS’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) CallCandidates.Rd:61: Escaped LaTeX specials: \& checkRd: (-1) CallCandidates.Rd:63: Escaped LaTeX specials: \& checkRd: (-1) CallPeaks.multiRep.Rd:7: Escaped LaTeX specials: \& checkRd: (-1) CallPeaks.paramEsti.Rd:10: Escaped LaTeX specials: \& checkRd: (-1) CallPeaks.paramEsti.Rd:23: Escaped LaTeX specials: \& checkRd: (-1) findBumps.Rd:8: Escaped LaTeX specials: \& * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed TRESS_DMRtest 24.478 1.476 15.027 CallDMRs.paramEsti 23.000 2.513 18.375 CoefName 19.782 1.992 18.013 * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.19-bioc/meat/TRESS.Rcheck/00check.log’ for details.
TRESS.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL TRESS ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘TRESS’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TRESS)
TRESS.Rcheck/TRESS-Ex.timings
name | user | system | elapsed | |
CallCandidates | 1.980 | 0.123 | 2.198 | |
CallDMRs.paramEsti | 23.000 | 2.513 | 18.375 | |
CallPeaks.multiRep | 1.755 | 0.163 | 1.954 | |
CallPeaks.oneRep | 0.080 | 0.021 | 0.102 | |
CallPeaks.paramEsti | 2.738 | 0.219 | 3.037 | |
CoefName | 19.782 | 1.992 | 18.013 | |
DMRInfer | 0.149 | 0.061 | 0.225 | |
DivideBins | 0.000 | 0.001 | 0.001 | |
ShowOnePeak | 0.226 | 0.060 | 0.295 | |
TRESS_DMRfit | 0.000 | 0.000 | 0.001 | |
TRESS_DMRtest | 24.478 | 1.476 | 15.027 | |
TRESS_peak | 0.000 | 0.000 | 0.001 | |
filterRegions | 0.010 | 0.010 | 0.019 | |
findBumps | 0.059 | 0.044 | 0.104 | |
meRatio | 0.022 | 0.006 | 0.028 | |