| Back to Build/check report for BioC 3.22: simplified long |
|
This page was generated on 2026-03-23 11:58 -0400 (Mon, 23 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4893 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2194/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| TDbasedUFEadv 1.10.0 (landing page) Y-h. Taguchi
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for TDbasedUFEadv in R Universe. | ||||||||||||||
|
To the developers/maintainers of the TDbasedUFEadv package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TDbasedUFEadv.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: TDbasedUFEadv |
| Version: 1.10.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 TDbasedUFEadv |
| StartedAt: 2026-03-22 20:31:17 -0400 (Sun, 22 Mar 2026) |
| EndedAt: 2026-03-22 20:35:06 -0400 (Sun, 22 Mar 2026) |
| EllapsedTime: 228.5 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 TDbasedUFEadv
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* checking for file ‘TDbasedUFEadv/DESCRIPTION’ ... OK
* preparing ‘TDbasedUFEadv’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Enrichment.Rmd’ using rmarkdown
trying URL 'https://stringdb-downloads.org/download/protein.aliases.v11.5/9606.protein.aliases.v11.5.txt.gz'
Content type 'application/octet-stream' length 21726816 bytes (20.7 MB)
==================================================
downloaded 20.7 MB
trying URL 'https://stringdb-downloads.org/download/protein.info.v11.5/9606.protein.info.v11.5.txt.gz'
Content type 'application/octet-stream' length 1901833 bytes (1.8 MB)
==================================================
downloaded 1.8 MB
Quitting from Enrichment.Rmd:120-133 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `readPNG()`:
! libpng error: Not a PNG file
---
Backtrace:
▆
1. └─string_db$plot_network(hits)
2. └─STRINGdb (local) get_png(...)
3. └─png::readPNG(postFormSmart(urlStr, .params = params, .ctype = "raw"))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Enrichment.Rmd' failed with diagnostics:
libpng error: Not a PNG file
--- failed re-building ‘Enrichment.Rmd’
--- re-building ‘Explanation_of_TDbasedUFEadv.Rmd’ using rmarkdown
--- finished re-building ‘Explanation_of_TDbasedUFEadv.Rmd’
--- re-building ‘How_to_use_TDbasedUFEadv.Rmd’ using rmarkdown
--- finished re-building ‘How_to_use_TDbasedUFEadv.Rmd’
SUMMARY: processing the following file failed:
‘Enrichment.Rmd’
Error: Vignette re-building failed.
Execution halted