Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2025-01-02 12:07 -0500 (Thu, 02 Jan 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4467 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1467/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
OpenStats 1.18.0 (landing page) Marina Kan
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | |||||||||
To the developers/maintainers of the OpenStats package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OpenStats.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: OpenStats |
Version: 1.18.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:OpenStats.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings OpenStats_1.18.0.tar.gz |
StartedAt: 2025-01-01 03:36:38 -0500 (Wed, 01 Jan 2025) |
EndedAt: 2025-01-01 03:38:28 -0500 (Wed, 01 Jan 2025) |
EllapsedTime: 110.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: OpenStats.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:OpenStats.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings OpenStats_1.18.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/OpenStats.Rcheck’ * using R version 4.4.2 (2024-10-31) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.7.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘OpenStats/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘OpenStats’ version ‘1.18.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘OpenStats’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) OpenStatsAnalysis.Rd:108: Escaped LaTeX specials: \& \& \& \& \& * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.20-bioc/meat/OpenStats.Rcheck/00check.log’ for details.
OpenStats.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL OpenStats ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘OpenStats’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OpenStats)
OpenStats.Rcheck/OpenStats-Ex.timings
name | user | system | elapsed | |
OpenStatsAnalysis | 1.826 | 0.079 | 1.910 | |
OpenStatsBuilder | 0.000 | 0.000 | 0.001 | |
OpenStatsComplementarySplit | 1.297 | 0.042 | 1.339 | |
OpenStatsList | 1.113 | 0.100 | 1.226 | |
OpenStatsReport | 2.030 | 0.282 | 2.354 | |
plot.OpenStats | 0.524 | 0.078 | 0.614 | |
plot.OpenStatsComplementarySplit | 1.545 | 0.232 | 1.819 | |
plot.OpenStatsFE | 0.088 | 0.011 | 0.100 | |
plot.OpenStatsMM | 0.538 | 0.080 | 0.631 | |
plot.OpenStatsRR | 0.271 | 0.037 | 0.314 | |
print.OpenStats | 0.442 | 0.065 | 0.517 | |
print.OpenStatsComplementarySplit | 1.499 | 0.227 | 1.767 | |
print.OpenStatsFE | 0.069 | 0.010 | 0.080 | |
print.OpenStatsMM | 0.530 | 0.081 | 0.625 | |
print.OpenStatsRR | 0.283 | 0.037 | 0.326 | |
summary.OpenStats | 0.467 | 0.066 | 0.543 | |
summary.OpenStatsComplementarySplit | 1.877 | 0.190 | 2.085 | |
summary.OpenStatsFE | 0.091 | 0.010 | 0.104 | |
summary.OpenStatsMM | 0.505 | 0.076 | 0.733 | |
summary.OpenStatsRR | 0.280 | 0.037 | 0.326 | |