| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-01-20 12:17 -0500 (Mon, 20 Jan 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4746 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4493 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1415/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| NeuCA 1.12.0 (landing page) Hao Feng
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the NeuCA package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/NeuCA.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: NeuCA |
| Version: 1.12.0 |
| Command: chmod a+r NeuCA -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data NeuCA |
| StartedAt: 2025-01-19 19:16:59 -0500 (Sun, 19 Jan 2025) |
| EndedAt: 2025-01-19 19:19:08 -0500 (Sun, 19 Jan 2025) |
| EllapsedTime: 129.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r NeuCA -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data NeuCA ### ############################################################################## ############################################################################## * checking for file 'NeuCA/DESCRIPTION' ... OK * preparing 'NeuCA': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'NeuCA.Rmd' using rmarkdown 2025-01-19 19:18:06.994293: I tensorflow/core/util/port.cc:113] oneDNN custom operations are on. You may see slightly different numerical results due to floating-point round-off errors from different computation orders. To turn them off, set the environment variable `TF_ENABLE_ONEDNN_OPTS=0`. 2025-01-19 19:18:18.361828: I tensorflow/core/util/port.cc:113] oneDNN custom operations are on. You may see slightly different numerical results due to floating-point round-off errors from different computation orders. To turn them off, set the environment variable `TF_ENABLE_ONEDNN_OPTS=0`. C:\PYTHON~1\Lib\site-packages\keras\src\layers\core\dense.py:87: UserWarning: Do not pass an `input_shape`/`input_dim` argument to a layer. When using Sequential models, prefer using an `Input(shape)` object as the first layer in the model instead. super().__init__(activity_regularizer=activity_regularizer, **kwargs) Quitting from lines 76-80 [unnamed-chunk-4] (NeuCA.Rmd) Error: processing vignette 'NeuCA.Rmd' failed with diagnostics: ValueError: Only input tensors may be passed as positional arguments. The following argument value should be passed as a keyword argument: <Sequential name=sequential, built=False> (of type <class 'keras.src.models.sequential.Sequential'>) Run `reticulate::py_last_error()` for details. --- failed re-building 'NeuCA.Rmd' SUMMARY: processing the following file failed: 'NeuCA.Rmd' Error: Vignette re-building failed. Execution halted