Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-08-13 17:40 -0400 (Tue, 13 Aug 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4758 |
palomino7 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4493 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4522 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4471 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 962/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HiCBricks 1.22.0 (landing page) Koustav Pal
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | |||||||||
To the developers/maintainers of the HiCBricks package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HiCBricks.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: HiCBricks |
Version: 1.22.0 |
Command: E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:HiCBricks.install-out.txt --library=E:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings HiCBricks_1.22.0.tar.gz |
StartedAt: 2024-08-12 01:54:30 -0400 (Mon, 12 Aug 2024) |
EndedAt: 2024-08-12 01:59:17 -0400 (Mon, 12 Aug 2024) |
EllapsedTime: 287.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HiCBricks.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:HiCBricks.install-out.txt --library=E:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings HiCBricks_1.22.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'E:/biocbuild/bbs-3.19-bioc/meat/HiCBricks.Rcheck' * using R version 4.4.1 (2024-06-14 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'HiCBricks/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'HiCBricks' version '1.22.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'HiCBricks' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed Brick_export_to_sparse 3.54 0.50 6.01 Brick_vizart_plot_heatmap 2.88 0.34 5.27 BrickContainer_unlink_resolution 2.27 0.34 6.09 Brick_add_ranges 2.36 0.25 5.46 Brick_rangekey_exists 1.12 0.16 5.34 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
HiCBricks.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL HiCBricks ### ############################################################################## ############################################################################## * installing to library 'E:/biocbuild/bbs-3.19-bioc/R/library' * installing *source* package 'HiCBricks' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HiCBricks)
HiCBricks.Rcheck/HiCBricks-Ex.timings
name | user | system | elapsed | |
BrickContainer_change_experiment_name | 1.79 | 0.25 | 3.73 | |
BrickContainer_change_output_directory | 1.46 | 0.16 | 3.31 | |
BrickContainer_get_path_to_file | 1.08 | 0.14 | 2.77 | |
BrickContainer_list_chromosomes | 0.97 | 0.07 | 3.71 | |
BrickContainer_list_experiment_name | 1.03 | 0.11 | 3.20 | |
BrickContainer_list_files | 1.20 | 0.10 | 2.83 | |
BrickContainer_list_output_directory | 1.07 | 0.04 | 2.89 | |
BrickContainer_list_resolutions | 1.12 | 0.13 | 2.89 | |
BrickContainer_unlink_resolution | 2.27 | 0.34 | 6.09 | |
Brick_add_ranges | 2.36 | 0.25 | 5.46 | |
Brick_call_compartments | 1.93 | 0.21 | 4.39 | |
Brick_export_to_sparse | 3.54 | 0.50 | 6.01 | |
Brick_fetch_range_index | 1.32 | 0.20 | 3.02 | |
Brick_fetch_row_vector | 2.04 | 0.28 | 4.39 | |
Brick_get_bintable | 1.06 | 0.13 | 2.80 | |
Brick_get_chrominfo | 1.23 | 0.07 | 2.75 | |
Brick_get_entire_matrix | 1.50 | 0.27 | 3.63 | |
Brick_get_matrix | 1.66 | 0.20 | 3.75 | |
Brick_get_matrix_mcols | 1.55 | 0.15 | 3.74 | |
Brick_get_matrix_within_coords | 2.07 | 0.32 | 4.48 | |
Brick_get_ranges | 0.96 | 0.20 | 2.61 | |
Brick_get_values_by_distance | 1.45 | 0.26 | 3.61 | |
Brick_get_vector_values | 1.50 | 0.30 | 3.49 | |
Brick_list_matrices | 1.09 | 0.08 | 2.55 | |
Brick_list_matrix_mcols | 1.06 | 0.14 | 2.69 | |
Brick_list_mcool_normalisations | 0 | 0 | 0 | |
Brick_list_mcool_resolutions | 0 | 0 | 0 | |
Brick_list_rangekeys | 1.08 | 0.20 | 3.39 | |
Brick_list_ranges_mcols | 0.92 | 0.16 | 2.74 | |
Brick_load_cis_matrix_till_distance | 1.25 | 0.26 | 3.68 | |
Brick_load_data_from_mcool | 0 | 0 | 0 | |
Brick_load_data_from_sparse | 0 | 0 | 0 | |
Brick_load_matrix | 1.55 | 0.33 | 3.75 | |
Brick_local_score_differentiator | 2.25 | 0.31 | 4.66 | |
Brick_make_ranges | 0.01 | 0.00 | 0.02 | |
Brick_matrix_dimensions | 1.36 | 0.25 | 3.84 | |
Brick_matrix_exists | 1.49 | 0.19 | 3.56 | |
Brick_matrix_filename | 1.62 | 0.42 | 3.66 | |
Brick_matrix_isdone | 1.21 | 0.41 | 4.00 | |
Brick_matrix_issparse | 1.39 | 0.28 | 3.84 | |
Brick_matrix_maxdist | 1.65 | 0.24 | 3.52 | |
Brick_matrix_minmax | 1.55 | 0.25 | 3.68 | |
Brick_mcool_normalisation_exists | 0 | 0 | 0 | |
Brick_rangekey_exists | 1.12 | 0.16 | 5.34 | |
Brick_return_region_position | 1.16 | 0.09 | 3.34 | |
Brick_vizart_plot_heatmap | 2.88 | 0.34 | 5.27 | |
Create_many_Bricks | 0.93 | 0.19 | 2.73 | |
Create_many_Bricks_from_mcool | 0 | 0 | 0 | |
load_BrickContainer | 1.10 | 0.17 | 3.52 | |