Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-08-13 17:39 -0400 (Tue, 13 Aug 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4758 |
palomino7 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4493 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4522 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4471 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 822/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
GENIE3 1.26.0 (landing page) Van Anh Huynh-Thu
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
To the developers/maintainers of the GENIE3 package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GENIE3.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: GENIE3 |
Version: 1.26.0 |
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL GENIE3 |
StartedAt: 2024-08-11 15:04:11 -0400 (Sun, 11 Aug 2024) |
EndedAt: 2024-08-11 15:04:15 -0400 (Sun, 11 Aug 2024) |
EllapsedTime: 4.0 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL GENIE3 ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’ * installing *source* package ‘GENIE3’ ... ** using staged installation ** libs using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ gcc -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c GENIE3.c -o GENIE3.o GENIE3.c: In function ‘find_the_best_threshold_multiregr’: GENIE3.c:1368:24: warning: ‘best_threshold’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1368 | current_threshold.f=best_threshold; | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ GENIE3.c:1370:27: warning: ‘best_info’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1370 | current_threshold_info=best_info; | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ GENIE3.c: In function ‘build_one_tree_ensemble’: GENIE3.c:1052:7: warning: ‘fp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1052 | write_one_tree(current_tree, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ GENIE3.c: In function ‘find_the_best_threshold_symb_multiregr’: GENIE3.c:1466:27: warning: ‘best_info’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1466 | current_threshold_info=best_info; | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ GENIE3.c: In function ‘compute_ltrees_variable_importance_multiregr_separate’: GENIE3.c:1762:10: warning: ‘flag_continue’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1762 | return flag_continue; | ^~~~~~~~~~~~~ gcc -shared -L/home/biocbuild/bbs-3.19-bioc/R/lib -L/usr/local/lib -o GENIE3.so GENIE3.o -L/home/biocbuild/bbs-3.19-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.19-bioc/R/site-library/00LOCK-GENIE3/00new/GENIE3/libs ** R ** inst ** byte-compile and prepare package for lazy loading in method for ‘GENIE3’ with signature ‘"SummarizedExperiment"’: no definition for class “SummarizedExperiment” in method for ‘GENIE3’ with signature ‘"ExpressionSet"’: no definition for class “ExpressionSet” ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GENIE3)