Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-08-13 17:41 -0400 (Tue, 13 Aug 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4758 |
palomino7 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4493 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4522 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4471 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 179/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
BiocFileCache 2.12.0 (landing page) Lori Shepherd
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
To the developers/maintainers of the BiocFileCache package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BiocFileCache.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: BiocFileCache |
Version: 2.12.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:BiocFileCache.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings BiocFileCache_2.12.0.tar.gz |
StartedAt: 2024-08-12 00:58:15 -0400 (Mon, 12 Aug 2024) |
EndedAt: 2024-08-12 01:00:58 -0400 (Mon, 12 Aug 2024) |
EllapsedTime: 163.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: BiocFileCache.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:BiocFileCache.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings BiocFileCache_2.12.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/BiocFileCache.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: x86_64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.5 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘BiocFileCache/DESCRIPTION’ ... OK * this is package ‘BiocFileCache’ version ‘2.12.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘BiocFileCache’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .sql_clean_cache: no visible binding for global variable ‘rid’ .sql_clean_cache: no visible binding for global variable ‘access_time’ .sql_get_resource_table: no visible binding for global variable ‘rid’ .sql_get_resource_table: no visible binding for global variable ‘id’ Undefined global functions or variables: access_time id rid * checking Rd files ... NOTE checkRd: (-1) BiocFileCache-class.Rd:486-487: Lost braces in \itemize; meant \describe ? checkRd: (-1) BiocFileCache-class.Rd:488: Lost braces in \itemize; meant \describe ? checkRd: (-1) BiocFileCache-class.Rd:495-496: Lost braces in \itemize; meant \describe ? checkRd: (-1) BiocFileCache-class.Rd:497-500: Lost braces in \itemize; meant \describe ? checkRd: (-1) BiocFileCache-class.Rd:501: Lost braces in \itemize; meant \describe ? checkRd: (-1) BiocFileCache-class.Rd:502-504: Lost braces in \itemize; meant \describe ? checkRd: (-1) BiocFileCache-class.Rd:505-506: Lost braces in \itemize; meant \describe ? checkRd: (-1) BiocFileCache-class.Rd:507-508: Lost braces in \itemize; meant \describe ? checkRd: (-1) BiocFileCache-class.Rd:509-511: Lost braces in \itemize; meant \describe ? checkRd: (-1) BiocFileCache-class.Rd:512-516: Lost braces in \itemize; meant \describe ? * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed BiocFileCache-class 5.507 0.35 6.532 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.19-bioc/meat/BiocFileCache.Rcheck/00check.log’ for details.
BiocFileCache.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL BiocFileCache ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘BiocFileCache’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BiocFileCache)
BiocFileCache.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14) -- "Race for Your Life" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin20 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(BiocFileCache) Loading required package: dbplyr > > test_check("BiocFileCache") adding: BiocFileCacheExport/ (stored 0%) adding: BiocFileCacheExport/file10fcf2812bae2 (stored 0%) adding: BiocFileCacheExport/BiocFileCache.sqlite (deflated 96%) adding: BiocFileCacheExport/10fcf65ab5ffb_file10fcf2812bae2 (stored 0%) [ FAIL 0 | WARN 3 | SKIP 0 | PASS 257 ] [ FAIL 0 | WARN 3 | SKIP 0 | PASS 257 ] > > proc.time() user system elapsed 39.752 3.189 59.705
BiocFileCache.Rcheck/BiocFileCache-Ex.timings
name | user | system | elapsed | |
BFCOption | 0.000 | 0.001 | 0.001 | |
BiocFileCache-class | 5.507 | 0.350 | 6.532 | |
makeCachedActiveBinding | 0.001 | 0.001 | 0.002 | |