Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-08-13 17:38 -0400 (Tue, 13 Aug 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4758 |
palomino7 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4493 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4522 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4471 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 130/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Basic4Cseq 1.40.0 (landing page) Carolin Walter
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
To the developers/maintainers of the Basic4Cseq package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Basic4Cseq.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: Basic4Cseq |
Version: 1.40.0 |
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:Basic4Cseq.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings Basic4Cseq_1.40.0.tar.gz |
StartedAt: 2024-08-11 20:45:44 -0400 (Sun, 11 Aug 2024) |
EndedAt: 2024-08-11 20:49:53 -0400 (Sun, 11 Aug 2024) |
EllapsedTime: 248.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: Basic4Cseq.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:Basic4Cseq.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings Basic4Cseq_1.40.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/Basic4Cseq.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 * running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * checking for file ‘Basic4Cseq/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘Basic4Cseq’ version ‘1.40.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘Basic4Cseq’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed readsToFragments 4.093 1.824 5.917 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
Basic4Cseq.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL Basic4Cseq ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’ * installing *source* package ‘Basic4Cseq’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Basic4Cseq)
Basic4Cseq.Rcheck/Basic4Cseq-Ex.timings
name | user | system | elapsed | |
Data4Cseq-class | 0.002 | 0.000 | 0.002 | |
Data4Cseq | 0.069 | 0.008 | 0.077 | |
checkRestrictionEnzymeSequence | 0 | 0 | 0 | |
chooseNearCisFragments | 0.006 | 0.004 | 0.011 | |
createVirtualFragmentLibrary | 0.000 | 0.000 | 0.001 | |
drawDigestionFragmentHistogram | 0.002 | 0.004 | 0.006 | |
drawHeatmap | 0 | 0 | 0 | |
exportVisualizationFragmentData | 0 | 0 | 0 | |
getReadDistribution | 0.919 | 0.016 | 0.936 | |
giveEnzymeSequence | 0.000 | 0.002 | 0.002 | |
importVisualizationFragmentData | 0.000 | 0.011 | 0.011 | |
liverData | 0.000 | 0.003 | 0.003 | |
liverDataRaw | 0.002 | 0.002 | 0.003 | |
normalizeFragmentData | 0.005 | 0.000 | 0.005 | |
plotTransInteractions | 0 | 0 | 0 | |
prepare4CseqData | 0 | 0 | 0 | |
printBEDFragmentLibrary | 0.000 | 0.000 | 0.001 | |
printWigFile | 0 | 0 | 0 | |
readPointsOfInterestFile | 0.001 | 0.002 | 0.002 | |
readsToFragments | 4.093 | 1.824 | 5.917 | |
simulateDigestion | 0.002 | 0.000 | 0.002 | |
visualizeViewpoint | 0.037 | 0.000 | 0.037 | |