Shana White
| Snapshot Date: 2024-11-28 07:30 -0500 (Thu, 28 Nov 2024) |
| git_url: https://git.bioconductor.org/packages/KOdata |
| git_branch: devel |
| git_last_commit: f20344e |
| git_last_commit_date: 2024-10-29 09:46:29 -0500 (Tue, 29 Oct 2024) |
| Back to Build/check report for BioC 3.21 experimental data |
|
This page was generated on 2024-11-28 15:01 -0500 (Thu, 28 Nov 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4748 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 209/429 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| KOdata 1.33.0 (landing page) Shana White
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | |||||||
|
To the developers/maintainers of the KOdata package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: KOdata |
| Version: 1.33.0 |
| Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:KOdata.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings KOdata_1.33.0.tar.gz |
| StartedAt: 2024-11-28 12:58:56 -0500 (Thu, 28 Nov 2024) |
| EndedAt: 2024-11-28 13:02:55 -0500 (Thu, 28 Nov 2024) |
| EllapsedTime: 239.1 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: KOdata.Rcheck |
| Warnings: 1 |
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###
### Running command:
###
### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:KOdata.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings KOdata_1.33.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.21-data-experiment/meat/KOdata.Rcheck’
* using R Under development (unstable) (2024-10-21 r87258)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘KOdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘KOdata’ version ‘1.33.0’
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘KOdata’ can be installed ... OK
* checking installed package size ... INFO
installed size is 53.6Mb
sub-directories of 1Mb or more:
data 53.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... NOTE
checkRd: (-1) KO_data.Rd:9: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KO_data.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KO_data.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KO_data.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KO_data.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KO_data.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KO_data.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KO_data.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KO_data.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gene_cell_info.Rd:9: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gene_cell_info.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gene_cell_info.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gene_cell_info.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gene_cell_info.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gene_cell_info.Rd:14: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... WARNING
LazyData DB of 55.7 MB without LazyDataCompression set
See §1.1.6 of 'Writing R Extensions'
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... NONE
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
‘/home/biocbuild/bbs-3.21-data-experiment/meat/KOdata.Rcheck/00check.log’
for details.
KOdata.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL KOdata ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’ * installing *source* package ‘KOdata’ ... ** using staged installation ** data *** moving datasets to lazyload DB ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (KOdata)