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This page was generated on 2025-04-05 00:14 -0400 (Sat, 05 Apr 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 871
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Package 155/217HostnameOS / ArchINSTALLBUILDCHECK
phyloseq 1.51.0  (landing page)
Paul J. McMurdie
Snapshot Date: 2025-04-05 00:00 -0400 (Sat, 05 Apr 2025)
git_url: https://git.bioconductor.org/packages/phyloseq
git_branch: devel
git_last_commit: fca5959
git_last_commit_date: 2024-10-29 09:40:05 -0400 (Tue, 29 Oct 2024)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  ERROR    ERROR  skipped

BUILD results for phyloseq on teran2

To the developers/maintainers of the phyloseq package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: phyloseq
Version: 1.51.0
Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data phyloseq
StartedAt: 2025-04-05 00:12:41 -0400 (Sat, 05 Apr 2025)
EndedAt: 2025-04-05 00:12:42 -0400 (Sat, 05 Apr 2025)
EllapsedTime: 1.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data phyloseq
###
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* checking for file ‘phyloseq/DESCRIPTION’ ... OK
cp: error writing '/tmp/Rtmp9Y0JGr/Rbuildfd2d541681030/phyloseq/inst/extdata/gp500-uuf.csv': No space left on device
cp: error writing '/tmp/Rtmp9Y0JGr/Rbuildfd2d541681030/phyloseq/inst/extdata/gp500-wuf.csv': No space left on device
cp: error writing '/tmp/Rtmp9Y0JGr/Rbuildfd2d541681030/phyloseq/inst/extdata/gp500-wufu.csv': No space left on device
cp: error writing '/tmp/Rtmp9Y0JGr/Rbuildfd2d541681030/phyloseq/inst/extdata/gp500test.env.txt': No space left on device
cp: error writing '/tmp/Rtmp9Y0JGr/Rbuildfd2d541681030/phyloseq/inst/extdata/gp500test.tree': No space left on device
cp: error writing '/tmp/Rtmp9Y0JGr/Rbuildfd2d541681030/phyloseq/inst/extdata/master_map.txt': No space left on device
cp: error writing '/tmp/Rtmp9Y0JGr/Rbuildfd2d541681030/phyloseq/inst/extdata/min_dense_otu_table.biom': No space left on device
cp: error writing '/tmp/Rtmp9Y0JGr/Rbuildfd2d541681030/phyloseq/inst/extdata/min_sparse_otu_table.biom': No space left on device
cp: error writing '/tmp/Rtmp9Y0JGr/Rbuildfd2d541681030/phyloseq/inst/extdata/mothur_example.cons.taxonomy.gz': No space left on device
cp: error writing '/tmp/Rtmp9Y0JGr/Rbuildfd2d541681030/phyloseq/inst/extdata/phyloseq.png': No space left on device
cp: error writing '/tmp/Rtmp9Y0JGr/Rbuildfd2d541681030/phyloseq/inst/extdata/qiime500-refseq.fasta': No space left on device
cp: error writing '/tmp/Rtmp9Y0JGr/Rbuildfd2d541681030/phyloseq/inst/extdata/rformat_dist_0.03.txt.gz': No space left on device
cp: error writing '/tmp/Rtmp9Y0JGr/Rbuildfd2d541681030/phyloseq/inst/extdata/rich_dense_otu_table.biom': No space left on device
cp: error writing '/tmp/Rtmp9Y0JGr/Rbuildfd2d541681030/phyloseq/inst/extdata/rich_sparse_otu_table.biom': No space left on device
cp: error writing '/tmp/Rtmp9Y0JGr/Rbuildfd2d541681030/phyloseq/inst/extdata/study_1457_split_library_seqs_and_mapping.zip': No space left on device
cp: error writing '/tmp/Rtmp9Y0JGr/Rbuildfd2d541681030/phyloseq/inst/extdata/study_816_split_library_seqs_and_mapping.tar.gz': No space left on device
cp: error writing '/tmp/Rtmp9Y0JGr/Rbuildfd2d541681030/phyloseq/inst/extdata/study_816_split_library_seqs_and_mapping.zip': No space left on device
cp: error writing '/tmp/Rtmp9Y0JGr/Rbuildfd2d541681030/phyloseq/inst/extdata/study_gp.txt': No space left on device
cp: error writing '/tmp/Rtmp9Y0JGr/Rbuildfd2d541681030/phyloseq/inst/extdata/usearch.uc': No space left on device
cp: cannot create directory '/tmp/Rtmp9Y0JGr/Rbuildfd2d541681030/phyloseq/inst/scripts': No space left on device
cp: error writing '/tmp/Rtmp9Y0JGr/Rbuildfd2d541681030/phyloseq/inst/CITATION': No space left on device
cp: error writing '/tmp/Rtmp9Y0JGr/Rbuildfd2d541681030/phyloseq/inst/NEWS': No space left on device
cp: cannot create directory '/tmp/Rtmp9Y0JGr/Rbuildfd2d541681030/phyloseq/man': No space left on device
cp: cannot create directory '/tmp/Rtmp9Y0JGr/Rbuildfd2d541681030/phyloseq/tests': No space left on device
cp: cannot create directory '/tmp/Rtmp9Y0JGr/Rbuildfd2d541681030/phyloseq/vignettes': No space left on device
 ERROR
copying to build directory failed