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This page was generated on 2024-12-01 09:39 -0500 (Sun, 01 Dec 2024).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-11-14 r87333) -- "Unsuffered Consequences" 861
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Package 63/216HostnameOS / ArchINSTALLBUILDCHECK
DEXSeq 1.53.0  (landing page)
Alejandro Reyes
Snapshot Date: 2024-12-01 06:00 -0500 (Sun, 01 Dec 2024)
git_url: https://git.bioconductor.org/packages/DEXSeq
git_branch: devel
git_last_commit: a6a6573
git_last_commit_date: 2024-10-29 09:37:20 -0500 (Tue, 29 Oct 2024)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped

BUILD results for DEXSeq on teran2

To the developers/maintainers of the DEXSeq package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: DEXSeq
Version: 1.53.0
Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data DEXSeq
StartedAt: 2024-12-01 06:42:35 -0500 (Sun, 01 Dec 2024)
EndedAt: 2024-12-01 06:43:33 -0500 (Sun, 01 Dec 2024)
EllapsedTime: 58.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data DEXSeq
###
##############################################################################
##############################################################################


* checking for file ‘DEXSeq/DESCRIPTION’ ... OK
* preparing ‘DEXSeq’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘DEXSeq.Rmd’ using rmarkdown
trying URL 'https://ftp.ensembl.org/pub/release-62/gtf/drosophila_melanogaster/Drosophila_melanogaster.BDGP5.25.62.gtf.gz'
Content type 'application/x-gzip' length 2739429 bytes (2.6 MB)
==================================================
downloaded 2.6 MB


Quitting from lines 150-151 [startVignette] (DEXSeq.Rmd)
Error: processing vignette 'DEXSeq.Rmd' failed with diagnostics:
there is no package called 'pasilla'
--- failed re-building ‘DEXSeq.Rmd’

SUMMARY: processing the following file failed:
  ‘DEXSeq.Rmd’

Error: Vignette re-building failed.
Execution halted