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This page was generated on 2025-04-01 18:16 -0400 (Tue, 01 Apr 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 871
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Package 184/217HostnameOS / ArchINSTALLBUILDCHECK
scater 1.35.4  (landing page)
Alan O'Callaghan
Snapshot Date: 2025-04-01 18:00 -0400 (Tue, 01 Apr 2025)
git_url: https://git.bioconductor.org/packages/scater
git_branch: devel
git_last_commit: 68425da
git_last_commit_date: 2025-03-07 06:28:00 -0400 (Fri, 07 Mar 2025)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped

BUILD results for scater on teran2

To the developers/maintainers of the scater package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: scater
Version: 1.35.4
Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data scater
StartedAt: 2025-04-01 18:15:12 -0400 (Tue, 01 Apr 2025)
EndedAt: 2025-04-01 18:15:12 -0400 (Tue, 01 Apr 2025)
EllapsedTime: 0.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data scater
###
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* checking for file ‘scater/DESCRIPTION’ ... OK
cp: error writing '/tmp/Rtmp4dBL0W/Rbuild2cceef439cd1d2/scater/R/SingleCellExperiment-methods.R': No space left on device
cp: error writing '/tmp/Rtmp4dBL0W/Rbuild2cceef439cd1d2/scater/R/annotateBMFeatures.R': No space left on device
cp: error writing '/tmp/Rtmp4dBL0W/Rbuild2cceef439cd1d2/scater/R/defunct.R': No space left on device
cp: error writing '/tmp/Rtmp4dBL0W/Rbuild2cceef439cd1d2/scater/R/getExplanatoryPCs.R': No space left on device
cp: error writing '/tmp/Rtmp4dBL0W/Rbuild2cceef439cd1d2/scater/R/getVarianceExplained.R': No space left on device
cp: error writing '/tmp/Rtmp4dBL0W/Rbuild2cceef439cd1d2/scater/R/ggsce.R': No space left on device
cp: error writing '/tmp/Rtmp4dBL0W/Rbuild2cceef439cd1d2/scater/R/nexprs.R': No space left on device
cp: error writing '/tmp/Rtmp4dBL0W/Rbuild2cceef439cd1d2/scater/R/plotColData.R': No space left on device
cp: error writing '/tmp/Rtmp4dBL0W/Rbuild2cceef439cd1d2/scater/R/plotDots.R': No space left on device
cp: error writing '/tmp/Rtmp4dBL0W/Rbuild2cceef439cd1d2/scater/R/plotExplanatoryPCs.R': No space left on device
cp: error writing '/tmp/Rtmp4dBL0W/Rbuild2cceef439cd1d2/scater/R/plotExplanatoryVariables.R': No space left on device
cp: error writing '/tmp/Rtmp4dBL0W/Rbuild2cceef439cd1d2/scater/R/plotExpression.R': No space left on device
cp: error writing '/tmp/Rtmp4dBL0W/Rbuild2cceef439cd1d2/scater/R/plotGroupedHeatmap.R': No space left on device
cp: error writing '/tmp/Rtmp4dBL0W/Rbuild2cceef439cd1d2/scater/R/plotHeatmap.R': No space left on device
cp: error writing '/tmp/Rtmp4dBL0W/Rbuild2cceef439cd1d2/scater/R/plotPlatePosition.R': No space left on device
cp: error writing '/tmp/Rtmp4dBL0W/Rbuild2cceef439cd1d2/scater/R/plotRLE.R': No space left on device
cp: error writing '/tmp/Rtmp4dBL0W/Rbuild2cceef439cd1d2/scater/R/plotRowData.R': No space left on device
cp: error writing '/tmp/Rtmp4dBL0W/Rbuild2cceef439cd1d2/scater/R/plotScater.R': No space left on device
cp: error writing '/tmp/Rtmp4dBL0W/Rbuild2cceef439cd1d2/scater/R/plot_colours.R': No space left on device
cp: error writing '/tmp/Rtmp4dBL0W/Rbuild2cceef439cd1d2/scater/R/plot_reddim.R': No space left on device
cp: error writing '/tmp/Rtmp4dBL0W/Rbuild2cceef439cd1d2/scater/R/projectReducedDim.R': No space left on device
cp: error writing '/tmp/Rtmp4dBL0W/Rbuild2cceef439cd1d2/scater/R/reexports.R': No space left on device
cp: error writing '/tmp/Rtmp4dBL0W/Rbuild2cceef439cd1d2/scater/R/retrieveCellInfo.R': No space left on device
cp: error writing '/tmp/Rtmp4dBL0W/Rbuild2cceef439cd1d2/scater/R/retrieveFeatureInfo.R': No space left on device
cp: error writing '/tmp/Rtmp4dBL0W/Rbuild2cceef439cd1d2/scater/R/runColDataPCA.R': No space left on device
cp: error writing '/tmp/Rtmp4dBL0W/Rbuild2cceef439cd1d2/scater/R/runMDS.R': No space left on device
cp: error writing '/tmp/Rtmp4dBL0W/Rbuild2cceef439cd1d2/scater/R/runMultiUMAP.R': No space left on device
cp: error writing '/tmp/Rtmp4dBL0W/Rbuild2cceef439cd1d2/scater/R/runPCA.R': No space left on device
cp: error writing '/tmp/Rtmp4dBL0W/Rbuild2cceef439cd1d2/scater/R/runTSNE.R': No space left on device
cp: error writing '/tmp/Rtmp4dBL0W/Rbuild2cceef439cd1d2/scater/R/scater-pkg.R': No space left on device
cp: error writing '/tmp/Rtmp4dBL0W/Rbuild2cceef439cd1d2/scater/R/utils_plotting.R': No space left on device
cp: error writing '/tmp/Rtmp4dBL0W/Rbuild2cceef439cd1d2/scater/R/utils_reddim.R': No space left on device
cp: error writing '/tmp/Rtmp4dBL0W/Rbuild2cceef439cd1d2/scater/R/plot_central.R': No space left on device
cp: cannot create directory '/tmp/Rtmp4dBL0W/Rbuild2cceef439cd1d2/scater/inst': No space left on device
cp: cannot create directory '/tmp/Rtmp4dBL0W/Rbuild2cceef439cd1d2/scater/man': No space left on device
cp: cannot create directory '/tmp/Rtmp4dBL0W/Rbuild2cceef439cd1d2/scater/tests': No space left on device
cp: cannot create directory '/tmp/Rtmp4dBL0W/Rbuild2cceef439cd1d2/scater/vignettes': No space left on device
 ERROR
copying to build directory failed